Wall clock time and date at job start Thu Apr 9 2020 14:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.27490 * 2 1 4 4 C 1.53997 * 110.30778 * 237.91485 * 2 1 3 5 5 N 1.47906 * 107.05871 * 242.30679 * 4 2 1 6 6 C 1.48529 * 105.81645 * 334.66750 * 5 4 2 7 7 C 1.54593 * 110.31247 * 122.19555 * 2 1 3 8 8 H 1.09004 * 110.72424 * 22.33918 * 7 2 1 9 9 C 1.52995 * 110.72702 * 259.23352 * 7 2 1 10 10 C 1.50695 * 109.47192 * 175.00291 * 9 7 2 11 11 O 1.21295 * 120.00092 * 359.97438 * 10 9 7 12 12 N 1.34783 * 120.00013 * 180.02562 * 10 9 7 13 13 C 1.37094 * 120.00132 * 179.97438 * 12 10 9 14 14 H 1.08005 * 120.00232 * 359.97438 * 13 12 10 15 15 C 1.38951 * 120.00245 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99640 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00085 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46661 * 60.00461 * 17 15 13 19 19 H 1.48496 * 109.46988 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47350 * 300.00276 * 17 15 13 21 21 H 1.08999 * 109.46952 * 180.63395 * 1 2 3 22 22 H 1.09005 * 109.46350 * 300.63149 * 1 2 3 23 23 H 1.09000 * 109.46944 * 60.63169 * 1 2 3 24 24 H 1.08998 * 109.91454 * 1.65688 * 4 2 1 25 25 H 1.09004 * 109.92077 * 122.95359 * 4 2 1 26 26 H 1.00899 * 110.99515 * 95.18245 * 5 4 2 27 27 H 1.08995 * 110.67216 * 280.77320 * 6 5 4 28 28 H 1.09004 * 110.66395 * 157.64034 * 6 5 4 29 29 H 1.09007 * 109.46910 * 294.99566 * 9 7 2 30 30 H 1.09000 * 109.47394 * 54.99562 * 9 7 2 31 31 H 0.96994 * 119.99858 * 359.97438 * 12 10 9 32 32 H 0.96999 * 119.99736 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0645 -0.7672 -1.2236 5 7 2.8314 -1.9229 -0.7101 6 6 3.2856 -1.5354 0.6498 7 6 2.0667 -0.7725 1.2269 8 1 1.3162 -1.4675 1.6035 9 6 2.5053 0.1960 2.3270 10 6 2.9071 -0.5841 3.5521 11 8 2.8480 -1.7956 3.5461 12 7 3.3312 0.0644 4.6550 13 6 3.6963 -0.6453 5.7697 14 1 3.6436 -1.7241 5.7644 15 6 4.1340 0.0232 6.9064 16 7 4.1976 1.3357 6.9131 17 14 4.6307 -0.9438 8.4255 18 1 5.7559 -1.8522 8.0880 19 1 5.0561 -0.0038 9.4935 20 1 3.4744 -1.7441 8.9029 21 1 -0.3633 -1.0276 0.0114 22 1 -0.3632 0.5237 0.8843 23 1 -0.3633 0.5040 -0.8956 24 1 1.2327 -1.1158 -1.8356 25 1 2.7162 -0.1208 -1.8116 26 1 2.2571 -2.7519 -0.6771 27 1 4.1564 -0.8823 0.5931 28 1 3.5048 -2.4194 1.2487 29 1 3.3536 0.7840 1.9765 30 1 1.6792 0.8623 2.5753 31 1 3.3782 1.0331 4.6599 32 1 4.5035 1.8024 7.7066 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722529968.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:08:43 Heat of formation + Delta-G solvation = -54.906597 kcal Electronic energy + Delta-G solvation = -14196.970315 eV Core-core repulsion = 11770.443366 eV Total energy + Delta-G solvation = -2426.526949 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23812 -37.63083 -33.96261 -32.11905 -31.28556 -30.85339 -26.52869 -25.31503 -24.00541 -21.32639 -19.59302 -19.03021 -17.83958 -16.32901 -15.54972 -14.97197 -14.67224 -14.40136 -13.81569 -13.49325 -13.15890 -12.67456 -12.54786 -12.21831 -11.67636 -11.57138 -11.39872 -11.03111 -10.89809 -10.67908 -10.43278 -10.33814 -10.29892 -10.18742 -9.49083 -8.41771 -8.34797 -7.96161 -6.41255 -3.82155 3.20116 3.25744 3.30219 3.93136 4.17325 4.44610 4.73501 4.81693 5.13865 5.21321 5.29138 5.42939 5.57025 5.66471 5.67642 5.75591 5.88630 6.03806 6.06508 6.14741 6.21992 6.32628 6.43209 6.55356 6.68833 6.94310 7.51650 7.55217 8.06363 8.61541 9.17987 9.55868 10.07102 10.76435 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.062314 B = 0.006439 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.232030 B = 4347.587683 C = 4547.829515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 H 0.076 0.924 4 C 0.046 3.954 5 N -0.679 5.679 6 C 0.052 3.948 7 C -0.094 4.094 8 H 0.082 0.918 9 C -0.120 4.120 10 C 0.440 3.560 11 O -0.596 6.596 12 N -0.563 5.563 13 C -0.302 4.302 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.334 0.666 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.392 0.608 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 0.386 -11.278 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 H 0.095 0.905 4 C -0.084 4.084 5 N -0.305 5.305 6 C -0.077 4.077 7 C -0.114 4.114 8 H 0.100 0.900 9 C -0.161 4.161 10 C 0.227 3.773 11 O -0.482 6.482 12 N -0.199 5.199 13 C -0.431 4.431 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.226 0.774 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.030 -0.167 -11.494 12.182 hybrid contribution -0.579 0.319 1.445 1.589 sum -4.609 0.152 -10.049 11.057 Atomic orbital electron populations 1.21827 0.94930 1.01593 1.01475 1.22512 0.95964 1.00402 0.95692 0.90519 1.22798 0.96293 0.92943 0.96366 1.62768 1.39599 1.05234 1.22914 1.23156 0.96680 1.00647 0.87217 1.22434 0.98656 0.96956 0.93385 0.89976 1.21471 1.01557 0.98367 0.94715 1.19955 0.84097 0.88446 0.84847 1.90489 1.59664 1.14150 1.83887 1.41916 1.57173 1.09379 1.11408 1.19673 1.40368 0.93267 0.89819 0.88011 1.25267 0.97495 0.95726 0.99442 1.69606 1.47365 1.06723 1.30637 0.85923 0.79142 0.78881 0.80305 1.19882 1.20957 1.19933 0.92888 0.92506 0.92927 0.91967 0.91065 0.85146 0.90787 0.89448 0.90482 0.90647 0.77438 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.89 37.16 0.33 -1.23 16 2 C -0.13 -1.58 3.16 -89.26 -0.28 -1.86 16 3 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 4 C 0.05 0.55 7.18 -2.75 -0.02 0.53 16 5 N -0.68 -9.41 7.51 -110.08 -0.83 -10.23 16 6 C 0.05 0.84 6.45 -1.90 -0.01 0.83 16 7 C -0.09 -1.49 2.16 -88.76 -0.19 -1.68 16 8 H 0.08 1.45 7.60 -51.93 -0.39 1.05 16 9 C -0.12 -2.11 5.08 -27.89 -0.14 -2.25 16 10 C 0.44 10.35 7.61 -10.99 -0.08 10.26 16 11 O -0.60 -15.81 14.42 5.54 0.08 -15.73 16 12 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 13 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 14 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 17 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.33 4.25 8.92 -39.29 -0.35 3.90 16 27 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 28 H 0.09 1.62 7.41 -51.93 -0.38 1.23 16 29 H 0.08 1.25 7.99 -51.93 -0.42 0.83 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 266.32 15.07 4.01 4.01 Total: -1.00 -29.93 266.32 -6.44 -36.38 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.71 Total: 11.46 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.64 Total: -3.52 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.16 Total: -48.75 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.08 Total: -15.73 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.93 -6.44 -36.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722529968.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.531 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds