Wall clock time and date at job start Thu Apr 9 2020 14:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00042 * 2 1 4 4 H 1.48498 * 109.46980 * 274.62381 * 3 2 1 5 5 H 1.48500 * 109.47049 * 34.62219 * 3 2 1 6 6 H 1.48497 * 109.47336 * 154.62545 * 3 2 1 7 7 C 1.38809 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00212 * 358.57822 * 7 2 1 9 9 N 1.36939 * 120.00349 * 178.57180 * 7 2 1 10 10 C 1.46500 * 120.00100 * 288.53706 * 9 7 2 11 11 C 1.53927 * 113.73452 * 30.80449 * 10 9 7 12 12 N 1.47960 * 86.18269 * 221.92421 * 11 10 9 13 13 C 1.47963 * 90.76233 * 24.68797 * 12 11 10 14 14 C 1.46499 * 119.99937 * 108.53093 * 9 7 2 15 15 H 1.09001 * 110.43401 * 180.70434 * 14 9 7 16 16 C 1.54808 * 110.48827 * 58.15888 * 14 9 7 17 17 C 1.55227 * 101.98777 * 220.51974 * 16 14 9 18 18 O 1.44379 * 103.56607 * 36.87940 * 17 16 14 19 19 C 1.43737 * 106.97626 * 320.01436 * 18 17 16 20 20 H 0.96997 * 120.00213 * 0.02562 * 1 2 3 21 21 H 1.08997 * 113.01295 * 162.44591 * 10 9 7 22 22 H 1.09006 * 113.76338 * 336.23740 * 11 10 9 23 23 H 1.09000 * 113.76429 * 107.60667 * 11 10 9 24 24 H 1.00899 * 111.00406 * 137.58441 * 12 11 10 25 25 H 1.08990 * 113.76048 * 220.99197 * 13 12 11 26 26 H 1.09008 * 113.75296 * 89.62696 * 13 12 11 27 27 H 1.09005 * 110.90726 * 338.64322 * 16 14 9 28 28 H 1.08999 * 110.91110 * 102.24209 * 16 14 9 29 29 H 1.09004 * 110.51881 * 278.38014 * 17 16 14 30 30 H 1.09004 * 110.77764 * 155.50103 * 17 16 14 31 31 H 1.09002 * 109.87805 * 267.09297 * 19 18 17 32 32 H 1.08999 * 109.88218 * 145.93949 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4000 2.1028 -1.3955 5 1 1.4999 2.6225 0.7955 6 1 3.5932 1.4140 0.6000 7 6 2.0103 -1.2021 0.0005 8 1 1.4706 -2.1373 0.0242 9 7 3.3794 -1.2023 -0.0290 10 6 4.0857 -0.8146 -1.2525 11 6 3.3290 0.2215 -2.1029 12 7 3.7451 -0.5818 -3.2737 13 6 3.8721 -1.7878 -2.4260 14 6 4.1377 -1.5901 1.1629 15 1 5.2086 -1.5230 0.9712 16 6 3.7553 -3.0233 1.6059 17 6 3.7065 -2.8810 3.1509 18 8 3.1559 -1.5616 3.3523 19 6 3.7478 -0.7042 2.3621 20 1 -0.4850 0.8400 -0.0004 21 1 5.1312 -0.5601 -1.0786 22 1 2.2521 0.2262 -1.9340 23 1 3.7693 1.2182 -2.0753 24 1 2.9871 -0.6808 -3.9322 25 1 4.7463 -2.3965 -2.6564 26 1 2.9540 -2.3708 -2.3515 27 1 2.7794 -3.3053 1.2105 28 1 4.5181 -3.7406 1.3032 29 1 4.7096 -2.9468 3.5725 30 1 3.0569 -3.6390 3.5887 31 1 4.6361 -0.2231 2.7717 32 1 3.0273 0.0504 2.0467 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885392137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:09:02 Heat of formation + Delta-G solvation = 24.714622 kcal Electronic energy + Delta-G solvation = -15305.252963 eV Core-core repulsion = 12882.178649 eV Total energy + Delta-G solvation = -2423.074314 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.17065 -38.14415 -34.21809 -31.93618 -29.89882 -27.88917 -25.89067 -25.46753 -23.54728 -21.88837 -19.85182 -18.94171 -17.38158 -16.25797 -15.46735 -15.08297 -14.86644 -14.59880 -13.87976 -13.34980 -12.82472 -12.70369 -12.33630 -11.92978 -11.80940 -11.17752 -10.94537 -10.77819 -10.67341 -10.48587 -10.11925 -10.02057 -9.59288 -9.55358 -8.95465 -8.63937 -8.24084 -6.45426 -6.01161 -4.02380 3.20597 3.39090 3.41241 4.34438 4.61688 4.74565 5.02336 5.14833 5.39835 5.59723 5.68953 5.72650 5.82710 5.88561 5.99677 6.14062 6.26976 6.29897 6.35860 6.44764 6.46456 6.51458 6.77439 6.82196 6.88550 6.95535 7.61587 7.84890 8.02278 8.56580 8.93575 9.47345 10.05981 10.97835 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.016366 C = 0.012645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.664539 B = 1710.438037 C = 2213.826361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.882 3.118 4 H -0.272 1.272 5 H -0.303 1.303 6 H -0.261 1.261 7 C -0.280 4.280 8 H 0.068 0.932 9 N -0.586 5.586 10 C 0.147 3.853 11 C -0.032 4.032 12 N -0.642 5.642 13 C -0.010 4.010 14 C 0.144 3.856 15 H 0.062 0.938 16 C -0.161 4.161 17 C 0.048 3.952 18 O -0.377 6.377 19 C 0.035 3.965 20 H 0.267 0.733 21 H 0.078 0.922 22 H 0.098 0.902 23 H 0.071 0.929 24 H 0.311 0.689 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 -2.552 0.367 8.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.146 4.146 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.231 1.231 6 H -0.185 1.185 7 C -0.409 4.409 8 H 0.086 0.914 9 N -0.306 5.306 10 C 0.040 3.960 11 C -0.163 4.163 12 N -0.267 5.267 13 C -0.143 4.143 14 C 0.037 3.963 15 H 0.080 0.920 16 C -0.201 4.201 17 C -0.029 4.029 18 O -0.295 6.295 19 C -0.043 4.043 20 H 0.077 0.923 21 H 0.096 0.904 22 H 0.116 0.884 23 H 0.089 0.911 24 H 0.122 0.878 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.628 -2.129 0.325 8.893 hybrid contribution -0.483 0.617 0.026 0.783 sum 8.146 -1.513 0.351 8.292 Atomic orbital electron populations 1.69783 1.06343 1.27252 1.49610 1.26247 0.95082 0.98914 0.94397 0.87170 0.80566 0.83418 0.77707 1.19848 1.23143 1.18538 1.18341 0.79328 0.92590 1.50667 0.91420 1.44102 1.02947 1.78267 1.05334 1.22459 0.94778 0.92805 0.85992 1.25005 1.02160 0.97705 0.91406 1.66780 1.41266 1.08864 1.09763 1.24268 1.01019 0.94353 0.94652 1.21897 0.94247 0.91948 0.88258 0.91976 1.23505 1.03304 0.98369 0.94890 1.23427 0.97315 0.86210 0.95996 1.88837 1.66891 1.19319 1.54476 1.23773 0.97341 0.94699 0.88452 0.92330 0.90404 0.88378 0.91082 0.87794 0.91440 0.90938 0.89186 0.91938 0.93663 0.90119 0.94483 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.97 55.49 0.78 -25.31 16 2 C 0.06 1.56 4.19 -17.43 -0.07 1.49 16 3 Si 0.88 21.28 21.40 -169.99 -3.64 17.65 16 4 H -0.27 -6.28 5.41 56.52 0.31 -5.98 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.26 -6.08 6.45 56.52 0.36 -5.72 16 7 C -0.28 -7.30 7.26 -15.06 -0.11 -7.41 16 8 H 0.07 1.99 7.43 -52.49 -0.39 1.60 16 9 N -0.59 -13.02 1.74 -157.75 -0.27 -13.30 16 10 C 0.15 3.01 4.14 -69.63 -0.29 2.72 16 11 C -0.03 -0.68 5.09 -2.77 -0.01 -0.70 16 12 N -0.64 -12.17 8.53 -117.17 -1.00 -13.17 16 13 C -0.01 -0.19 8.54 -2.76 -0.02 -0.22 16 14 C 0.14 2.85 3.59 -66.40 -0.24 2.61 16 15 H 0.06 1.09 7.81 -51.93 -0.41 0.68 16 16 C -0.16 -2.91 6.75 -24.60 -0.17 -3.07 16 17 C 0.05 0.81 7.72 38.34 0.30 1.11 16 18 O -0.38 -8.06 11.52 -35.23 -0.41 -8.46 16 19 C 0.04 0.75 6.91 37.73 0.26 1.01 16 20 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.08 1.48 7.91 -51.93 -0.41 1.07 16 22 H 0.10 2.36 4.30 -51.93 -0.22 2.14 16 23 H 0.07 1.50 6.33 -51.93 -0.33 1.17 16 24 H 0.31 5.51 8.91 -39.29 -0.35 5.16 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.47 7.88 -51.92 -0.41 1.07 16 27 H 0.09 1.87 6.75 -51.93 -0.35 1.52 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 2.25 4.23 -51.93 -0.22 2.03 16 LS Contribution 240.90 15.07 3.63 3.63 Total: -1.00 -28.48 240.90 -5.74 -34.22 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.47 Total: 7.20 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.36 Total: -2.47 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.50 Total: -51.77 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.41 Total: -8.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -3.64 Total: 17.65 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.48 -5.74 -34.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885392137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.935 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds