Wall clock time and date at job start Thu Apr 9 2020 14:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.27464 * 2 1 4 4 C 1.54604 * 110.30887 * 237.80963 * 2 1 3 5 5 C 1.54938 * 102.92068 * 219.12563 * 4 2 1 6 6 N 1.48526 * 103.22940 * 37.41084 * 5 4 2 7 7 C 1.47905 * 105.82193 * 320.79356 * 6 5 4 8 8 H 1.09004 * 110.08039 * 144.76757 * 7 6 5 9 9 C 1.50697 * 109.91682 * 265.97496 * 7 6 5 10 10 O 1.21288 * 120.00165 * 17.58825 * 9 7 6 11 11 N 1.34776 * 119.99742 * 197.59024 * 9 7 6 12 12 C 1.37102 * 120.00101 * 179.97438 * 11 9 7 13 13 H 1.07993 * 119.99399 * 0.02562 * 12 11 9 14 14 C 1.38946 * 119.99945 * 179.97438 * 12 11 9 15 15 N 1.31406 * 120.00502 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99624 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47239 * 60.00447 * 16 14 12 18 18 H 1.48500 * 109.47305 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47481 * 300.00213 * 16 14 12 20 20 H 1.09002 * 109.47153 * 297.90616 * 1 2 3 21 21 H 1.09001 * 109.46832 * 177.90807 * 1 2 3 22 22 H 1.09004 * 109.47261 * 57.90788 * 1 2 3 23 23 H 1.09002 * 109.46437 * 60.70348 * 3 2 1 24 24 H 1.09000 * 109.47051 * 180.70060 * 3 2 1 25 25 H 1.08993 * 109.47041 * 300.70643 * 3 2 1 26 26 H 1.08996 * 110.72357 * 337.48369 * 4 2 1 27 27 H 1.09001 * 110.72203 * 100.76857 * 4 2 1 28 28 H 1.09007 * 110.66365 * 278.97734 * 5 4 2 29 29 H 1.08997 * 110.80757 * 155.92086 * 5 4 2 30 30 H 1.00900 * 111.00716 * 200.28090 * 6 5 4 31 31 H 0.97008 * 120.00347 * 359.97438 * 11 9 7 32 32 H 0.96996 * 120.00501 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4353 0.0000 4 6 2.0666 -0.7724 -1.2270 5 6 3.2855 -1.5354 -0.6502 6 7 2.8314 -1.9229 0.7098 7 6 2.0646 -0.7672 1.2235 8 1 1.2328 -1.1130 1.8373 9 6 2.9656 0.1263 2.0363 10 8 4.1701 0.0333 1.9277 11 7 2.4331 1.0286 2.8840 12 6 3.2527 1.8412 3.6240 13 1 4.3251 1.7584 3.5272 14 6 2.7036 2.7719 4.4974 15 7 1.3987 2.8729 4.6148 16 14 3.8205 3.8794 5.5050 17 1 4.6615 4.6959 4.5931 18 1 2.9944 4.7761 6.3529 19 1 4.6937 3.0465 6.3706 20 1 -0.3633 0.4810 0.9082 21 1 -0.3633 -1.0270 -0.0375 22 1 -0.3634 0.5460 -0.8707 23 1 1.7143 1.9502 0.8963 24 1 3.1500 1.4200 -0.0126 25 1 1.6938 1.9579 -0.8835 26 1 1.3173 -1.4696 -1.6018 27 1 2.3791 -0.0823 -2.0108 28 1 4.1564 -0.8822 -0.5935 29 1 3.5075 -2.4192 -1.2483 30 1 3.6170 -2.1303 1.3080 31 1 1.4697 1.1032 2.9706 32 1 1.0154 3.5228 5.2243 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885396523.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:09:13 Heat of formation + Delta-G solvation = -46.766002 kcal Electronic energy + Delta-G solvation = -14928.761987 eV Core-core repulsion = 12502.588041 eV Total energy + Delta-G solvation = -2426.173946 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82710 -36.83527 -34.10008 -32.63603 -31.19541 -29.13358 -27.00119 -25.64429 -24.32623 -21.51647 -19.77808 -18.40195 -17.66515 -16.28147 -15.61225 -14.74216 -14.50508 -14.04099 -13.80805 -13.33178 -12.74370 -12.64351 -12.30194 -11.94585 -11.60504 -11.36377 -11.22176 -11.16562 -11.04256 -10.54658 -10.46522 -10.28457 -10.25033 -10.17023 -9.51113 -8.81809 -7.99190 -7.88465 -6.44653 -3.85619 3.16832 3.23521 3.27740 3.81788 4.14822 4.75354 4.89305 4.90766 5.05899 5.27776 5.38910 5.63967 5.69764 5.82355 5.90906 6.06419 6.12993 6.15451 6.21416 6.31073 6.39574 6.41633 6.49613 6.67221 6.87696 7.16708 7.51584 7.75166 8.01683 8.55882 9.13140 9.50381 10.00370 10.72150 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046821 B = 0.009299 C = 0.008522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.884578 B = 3010.257914 C = 3284.667295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.113 4.113 5 C 0.038 3.962 6 N -0.650 5.650 7 C 0.063 3.937 8 H 0.092 0.908 9 C 0.426 3.574 10 O -0.602 6.602 11 N -0.554 5.554 12 C -0.302 4.302 13 H 0.101 0.899 14 C 0.025 3.975 15 N -0.898 5.898 16 Si 0.929 3.071 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.274 1.274 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.345 0.655 31 H 0.393 0.607 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 -3.985 -8.011 9.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.092 4.092 6 N -0.280 5.280 7 C -0.050 4.050 8 H 0.110 0.890 9 C 0.211 3.789 10 O -0.489 6.489 11 N -0.189 5.189 12 C -0.432 4.432 13 H 0.119 0.881 14 C -0.177 4.177 15 N -0.539 5.539 16 Si 0.756 3.244 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.199 1.199 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.163 0.837 31 H 0.227 0.773 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.609 -4.335 -8.130 9.576 hybrid contribution 0.661 1.368 0.893 1.762 sum -1.948 -2.967 -7.237 8.060 Atomic orbital electron populations 1.21873 0.93894 1.01610 1.01964 1.21284 0.95681 0.95577 0.93652 1.22085 1.01658 0.94517 1.02299 1.22606 0.97470 0.98298 0.96676 1.22971 0.96811 0.98492 0.90904 1.63401 1.26920 1.33738 1.03975 1.22377 0.96554 0.90520 0.95598 0.88997 1.20532 0.89298 0.84826 0.84217 1.90497 1.15194 1.72724 1.70445 1.41982 1.09490 1.31573 1.35847 1.19658 0.92177 1.13221 1.18153 0.88097 1.25256 0.96195 0.98262 0.98010 1.69596 1.09964 1.36426 1.37904 0.85943 0.79421 0.79562 0.79446 1.19926 1.20907 1.19910 0.92158 0.92439 0.92721 0.90748 0.92105 0.93291 0.91099 0.91458 0.93318 0.90867 0.83681 0.77318 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.23 37.16 0.31 -1.60 16 2 C -0.06 -0.99 0.97 -153.15 -0.15 -1.14 16 3 C -0.15 -2.69 7.25 37.16 0.27 -2.43 16 4 C -0.11 -1.63 6.16 -24.87 -0.15 -1.78 16 5 C 0.04 0.60 7.38 -1.90 -0.01 0.59 16 6 N -0.65 -11.61 7.25 -104.34 -0.76 -12.36 16 7 C 0.06 1.20 3.49 -67.79 -0.24 0.97 16 8 H 0.09 1.69 7.68 -51.93 -0.40 1.29 16 9 C 0.43 10.04 4.79 -10.99 -0.05 9.99 16 10 O -0.60 -16.12 15.11 5.55 0.08 -16.03 16 11 N -0.55 -13.92 4.02 -10.97 -0.04 -13.96 16 12 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 13 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 14 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 15 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 16 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 1.52 6.54 -51.93 -0.34 1.18 16 24 H 0.06 1.25 7.34 -51.93 -0.38 0.87 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.92 7.84 -51.93 -0.41 0.52 16 27 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 28 H 0.05 0.87 7.99 -51.93 -0.41 0.46 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.35 6.61 7.77 -39.29 -0.31 6.30 16 31 H 0.39 9.59 7.79 -40.82 -0.32 9.27 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 260.68 15.07 3.93 3.93 Total: -1.00 -29.14 260.68 -5.95 -35.09 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -4.59 Total: 14.16 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.27 Total: -3.34 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.08 Total: -49.76 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.08 Total: -16.03 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.14 -5.95 -35.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885396523.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.678 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds