Wall clock time and date at job start Thu Apr 9 2020 14:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.27464 * 2 1 4 4 C 1.54604 * 110.30887 * 237.80963 * 2 1 3 5 5 C 1.54938 * 102.92068 * 219.12563 * 4 2 1 6 6 N 1.48526 * 103.22940 * 37.41084 * 5 4 2 7 7 C 1.47905 * 105.82193 * 320.79356 * 6 5 4 8 8 H 1.09004 * 110.08039 * 144.76757 * 7 6 5 9 9 C 1.50697 * 109.91682 * 265.97496 * 7 6 5 10 10 O 1.21288 * 120.00165 * 17.58825 * 9 7 6 11 11 N 1.34776 * 119.99742 * 197.59024 * 9 7 6 12 12 C 1.37102 * 120.00101 * 179.97438 * 11 9 7 13 13 H 1.07993 * 119.99399 * 0.02562 * 12 11 9 14 14 C 1.38946 * 119.99945 * 179.97438 * 12 11 9 15 15 N 1.31406 * 120.00502 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99624 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47239 * 60.00447 * 16 14 12 18 18 H 1.48500 * 109.47305 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47481 * 300.00213 * 16 14 12 20 20 H 1.09002 * 109.47153 * 297.90616 * 1 2 3 21 21 H 1.09001 * 109.46832 * 177.90807 * 1 2 3 22 22 H 1.09004 * 109.47261 * 57.90788 * 1 2 3 23 23 H 1.09002 * 109.46437 * 60.70348 * 3 2 1 24 24 H 1.09000 * 109.47051 * 180.70060 * 3 2 1 25 25 H 1.08993 * 109.47041 * 300.70643 * 3 2 1 26 26 H 1.08996 * 110.72357 * 337.48369 * 4 2 1 27 27 H 1.09001 * 110.72203 * 100.76857 * 4 2 1 28 28 H 1.09007 * 110.66365 * 278.97734 * 5 4 2 29 29 H 1.08997 * 110.80757 * 155.92086 * 5 4 2 30 30 H 1.00900 * 111.00716 * 200.28090 * 6 5 4 31 31 H 0.97008 * 120.00347 * 359.97438 * 11 9 7 32 32 H 0.96996 * 120.00501 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4353 0.0000 4 6 2.0666 -0.7724 -1.2270 5 6 3.2855 -1.5354 -0.6502 6 7 2.8314 -1.9229 0.7098 7 6 2.0646 -0.7672 1.2235 8 1 1.2328 -1.1130 1.8373 9 6 2.9656 0.1263 2.0363 10 8 4.1701 0.0333 1.9277 11 7 2.4331 1.0286 2.8840 12 6 3.2527 1.8412 3.6240 13 1 4.3251 1.7584 3.5272 14 6 2.7036 2.7719 4.4974 15 7 1.3987 2.8729 4.6148 16 14 3.8205 3.8794 5.5050 17 1 4.6615 4.6959 4.5931 18 1 2.9944 4.7761 6.3529 19 1 4.6937 3.0465 6.3706 20 1 -0.3633 0.4810 0.9082 21 1 -0.3633 -1.0270 -0.0375 22 1 -0.3634 0.5460 -0.8707 23 1 1.7143 1.9502 0.8963 24 1 3.1500 1.4200 -0.0126 25 1 1.6938 1.9579 -0.8835 26 1 1.3173 -1.4696 -1.6018 27 1 2.3791 -0.0823 -2.0108 28 1 4.1564 -0.8822 -0.5935 29 1 3.5075 -2.4192 -1.2483 30 1 3.6170 -2.1303 1.3080 31 1 1.4697 1.1032 2.9706 32 1 1.0154 3.5228 5.2243 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885396523.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:09:13 Heat of formation + Delta-G solvation = -68.226994 kcal Electronic energy + Delta-G solvation = -14929.692606 eV Core-core repulsion = 12502.588041 eV Total energy + Delta-G solvation = -2427.104565 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.43461 -38.55913 -36.08945 -34.10041 -33.16263 -30.56169 -28.33050 -27.36125 -25.99840 -22.97383 -21.38000 -20.21983 -19.42715 -17.99995 -17.18805 -16.50934 -16.10783 -15.75660 -15.56066 -14.59415 -14.50060 -14.14291 -13.75382 -13.57894 -13.29628 -12.97791 -12.72929 -12.48762 -12.44579 -12.38331 -12.15200 -11.96862 -11.61697 -11.57450 -11.36675 -10.59416 -10.03092 -9.51199 -8.48973 -5.98253 1.35505 1.38542 1.49155 1.96784 2.26613 3.13647 3.15903 3.37392 3.59805 3.74355 4.04160 4.32986 4.37495 4.39772 4.54443 4.73102 4.77673 4.83857 4.93478 5.02445 5.09006 5.19815 5.23937 5.35880 5.38645 5.45755 5.75031 5.95411 6.22158 6.53677 7.07392 7.50637 8.04127 8.67098 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046821 B = 0.009299 C = 0.008522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.884578 B = 3010.257914 C = 3284.667295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.103 4.103 5 C 0.033 3.967 6 N -0.644 5.644 7 C 0.066 3.934 8 H 0.101 0.899 9 C 0.427 3.573 10 O -0.639 6.639 11 N -0.560 5.560 12 C -0.336 4.336 13 H 0.076 0.924 14 C -0.009 4.009 15 N -0.915 5.915 16 Si 0.990 3.010 17 H -0.273 1.273 18 H -0.268 1.268 19 H -0.273 1.273 20 H 0.049 0.951 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.045 0.955 24 H 0.026 0.974 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.020 0.980 29 H 0.102 0.898 30 H 0.335 0.665 31 H 0.395 0.605 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 -4.218 -9.050 10.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.141 4.141 5 C -0.096 4.096 6 N -0.273 5.273 7 C -0.048 4.048 8 H 0.119 0.881 9 C 0.214 3.786 10 O -0.527 6.527 11 N -0.195 5.195 12 C -0.465 4.465 13 H 0.094 0.906 14 C -0.209 4.209 15 N -0.555 5.555 16 Si 0.814 3.186 17 H -0.198 1.198 18 H -0.193 1.193 19 H -0.198 1.198 20 H 0.068 0.932 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.039 0.961 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.229 0.771 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.802 -4.577 -9.181 10.941 hybrid contribution 1.049 1.408 1.182 2.116 sum -2.753 -3.169 -7.999 9.034 Atomic orbital electron populations 1.21843 0.91437 1.02996 1.02527 1.21348 0.97535 0.93991 0.93238 1.21990 0.99382 0.96193 1.02264 1.22636 0.97057 0.98541 0.95863 1.23115 0.96662 0.99492 0.90319 1.63495 1.26447 1.32720 1.04626 1.22486 0.95802 0.90186 0.96296 0.88126 1.21453 0.89456 0.84301 0.83380 1.90464 1.17241 1.73712 1.71315 1.41996 1.09287 1.31970 1.36263 1.19597 0.91520 1.15266 1.20166 0.90609 1.26005 0.97665 0.98885 0.98357 1.69656 1.10946 1.36780 1.38137 0.85037 0.77809 0.77812 0.77972 1.19805 1.19263 1.19829 0.93234 0.90752 0.90482 0.93585 0.95480 0.90367 0.88403 0.89964 0.96118 0.88000 0.84818 0.77059 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.23 71.98 0.59 -2.65 16 2 C -0.06 -1.85 0.97 -51.30 -0.05 -1.90 16 3 C -0.14 -5.06 7.25 71.98 0.52 -4.54 16 4 C -0.10 -2.66 6.16 31.80 0.20 -2.46 16 5 C 0.03 1.01 7.38 86.65 0.64 1.65 16 6 N -0.64 -22.35 7.25 -484.03 -3.51 -25.85 16 7 C 0.07 2.47 3.49 44.31 0.15 2.63 16 8 H 0.10 3.59 7.68 -2.38 -0.02 3.57 16 9 C 0.43 20.71 4.79 87.66 0.42 21.13 16 10 O -0.64 -35.58 15.11 -3.05 -0.05 -35.63 16 11 N -0.56 -29.04 4.02 -307.00 -1.23 -30.27 16 12 C -0.34 -19.18 9.68 84.04 0.81 -18.36 16 13 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 14 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 15 N -0.91 -49.24 13.05 21.66 0.28 -48.96 16 16 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 22 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.05 1.90 6.54 -2.39 -0.02 1.89 16 24 H 0.03 1.12 7.34 -2.39 -0.02 1.10 16 25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.10 2.06 7.84 -2.39 -0.02 2.04 16 27 H 0.08 1.91 7.86 -2.39 -0.02 1.89 16 28 H 0.02 0.74 7.99 -2.38 -0.02 0.72 16 29 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.34 12.89 7.77 -89.69 -0.70 12.20 16 31 H 0.40 19.78 7.79 -92.70 -0.72 19.06 16 32 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -63.86 260.68 0.98 -62.87 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -0.29 Total: 37.23 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 3.75 Total: -4.51 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -4.46 Total: -105.08 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.05 Total: -35.63 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -63.86 0.98 -62.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885396523.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.354 kcal (2) G-P(sol) polarization free energy of solvation -63.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds