Wall clock time and date at job start Thu Apr 9 2020 14:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.49328 * 2 1 4 4 N 1.47054 * 110.54869 * 122.70486 * 2 1 3 5 5 C 1.33944 * 109.18441 * 118.59604 * 4 2 1 6 6 O 1.21584 * 123.04760 * 179.97438 * 5 4 2 7 7 N 1.33950 * 113.91509 * 359.97438 * 5 4 2 8 8 C 1.46499 * 125.41115 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47198 * 90.03010 * 8 7 5 10 10 C 1.50701 * 109.47211 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 8 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48504 * 109.47266 * 60.00049 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47383 * 299.99456 * 14 12 10 18 18 C 1.47058 * 109.17930 * 0.26996 * 7 5 4 19 19 H 1.08997 * 110.55083 * 118.32882 * 18 7 5 20 20 C 1.53004 * 110.54656 * 241.14270 * 18 7 5 21 21 H 1.08998 * 109.46807 * 298.75441 * 1 2 3 22 22 H 1.09003 * 109.47274 * 58.75029 * 1 2 3 23 23 H 1.08998 * 109.47274 * 178.75149 * 1 2 3 24 24 H 0.96997 * 125.40823 * 298.58598 * 4 2 1 25 25 H 1.09000 * 109.47602 * 330.02560 * 8 7 5 26 26 H 1.09007 * 109.47337 * 210.02275 * 8 7 5 27 27 H 1.09000 * 109.47211 * 59.99311 * 9 8 7 28 28 H 1.09007 * 109.46376 * 299.99853 * 9 8 7 29 29 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 30 30 H 1.08994 * 109.47264 * 58.54033 * 20 18 7 31 31 H 1.09006 * 109.46797 * 178.54616 * 20 18 7 32 32 H 1.08996 * 109.46866 * 298.54205 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9116 1.0210 0.0000 4 7 2.0462 -0.7440 1.1587 5 6 2.7676 -1.7865 0.7265 6 8 3.3129 -2.5722 1.4772 7 7 2.8340 -1.8851 -0.6077 8 6 3.5530 -2.9255 -1.3473 9 6 2.6168 -4.1082 -1.6038 10 6 3.3565 -5.1787 -2.3640 11 1 4.3908 -5.0301 -2.6373 12 6 2.7111 -6.3450 -2.7161 13 7 1.4516 -6.5258 -2.3836 14 14 3.6258 -7.6687 -3.6652 15 1 4.7929 -8.1301 -2.8713 16 1 2.7157 -8.8146 -3.9183 17 1 4.0959 -7.1140 -4.9600 18 6 2.0756 -0.7797 -1.2122 19 1 2.7314 -0.1484 -1.8116 20 6 0.9241 -1.3204 -2.0624 21 1 -0.3633 0.4944 0.9009 22 1 -0.3634 0.5331 -0.8786 23 1 -0.3634 -1.0274 -0.0224 24 1 1.8892 -0.5159 2.0883 25 1 4.4099 -3.2605 -0.7629 26 1 3.8978 -2.5220 -2.2994 27 1 1.7599 -3.7732 -2.1882 28 1 2.2719 -4.5116 -0.6517 29 1 0.9975 -7.3462 -2.6317 30 1 0.2678 -1.9290 -1.4404 31 1 0.3589 -0.4873 -2.4804 32 1 1.3253 -1.9298 -2.8720 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953002235.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:09:18 Heat of formation + Delta-G solvation = -25.355349 kcal Electronic energy + Delta-G solvation = -14588.264194 eV Core-core repulsion = 12163.018683 eV Total energy + Delta-G solvation = -2425.245511 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.81342 -36.44851 -34.73374 -32.71343 -31.73650 -29.75133 -27.88489 -25.11858 -24.25254 -21.61918 -20.39335 -19.49146 -17.27089 -16.39652 -15.76067 -15.31398 -14.53977 -14.45600 -14.00262 -13.76665 -12.87656 -12.75186 -12.48776 -12.27980 -11.98883 -11.69101 -11.39396 -10.97948 -10.92126 -10.83863 -10.64933 -9.89912 -9.79829 -9.52722 -9.13495 -8.91324 -8.31523 -7.88909 -5.97912 -4.00935 3.11198 3.35595 3.39886 3.42838 3.70337 4.24661 4.47305 4.50187 4.91999 5.05866 5.36182 5.38205 5.43049 5.61652 5.70866 5.84060 6.00302 6.05932 6.21301 6.48745 6.55687 6.64678 6.89385 7.27744 7.46058 7.70945 7.80461 8.04880 8.12909 8.40377 9.04389 9.16354 9.62528 11.13385 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045774 B = 0.007894 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.555464 B = 3546.095710 C = 3796.215658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 H 0.083 0.917 4 N -0.747 5.747 5 C 0.695 3.305 6 O -0.590 6.590 7 N -0.620 5.620 8 C 0.151 3.849 9 C 0.009 3.991 10 C -0.522 4.522 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.123 3.877 19 H 0.083 0.917 20 C -0.161 4.161 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.421 0.579 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.023 0.977 28 H 0.020 0.980 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 15.044 1.218 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.101 0.899 4 N -0.409 5.409 5 C 0.396 3.604 6 O -0.468 6.468 7 N -0.358 5.358 8 C 0.031 3.969 9 C -0.029 4.029 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.018 3.982 19 H 0.101 0.899 20 C -0.219 4.219 21 H 0.076 0.924 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.261 0.739 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.258 14.371 1.457 14.620 hybrid contribution 0.219 -0.619 -0.182 0.681 sum -2.039 13.752 1.275 13.961 Atomic orbital electron populations 1.22262 0.94270 1.03430 1.02110 1.21889 0.95002 0.95939 0.85481 0.89879 1.45272 1.56698 1.30535 1.08390 1.15976 0.79741 0.81367 0.83362 1.90932 1.52571 1.45515 1.57767 1.47644 1.54143 1.29237 1.04729 1.21639 0.95145 0.86648 0.93492 1.19517 0.94833 0.91232 0.97344 1.21078 0.97767 1.01522 1.35729 0.92580 1.24985 0.94887 0.98269 0.96087 1.69964 1.10165 1.26521 1.46541 0.86631 0.79641 0.81234 0.80319 1.20175 1.21314 1.20236 1.21907 0.93780 0.88377 0.94171 0.89900 1.22296 0.97741 1.01271 1.00622 0.92441 0.90971 0.91144 0.73862 0.91112 0.91714 0.95866 0.96159 0.92958 0.91383 0.91862 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.43 37.16 0.31 -1.27 16 2 C 0.12 1.41 4.37 -67.05 -0.29 1.12 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 N -0.75 -10.88 6.03 -58.20 -0.35 -11.23 16 5 C 0.70 14.02 8.60 -88.40 -0.76 13.26 16 6 O -0.59 -14.68 17.53 5.29 0.09 -14.59 16 7 N -0.62 -11.82 2.70 -171.23 -0.46 -12.28 16 8 C 0.15 3.29 5.71 -4.04 -0.02 3.27 16 9 C 0.01 0.23 5.16 -27.88 -0.14 0.09 16 10 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 14 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.12 1.71 4.07 -67.04 -0.27 1.44 16 19 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 20 C -0.16 -2.24 7.36 37.16 0.27 -1.97 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.07 0.56 7.19 -51.93 -0.37 0.19 16 23 H 0.07 0.85 6.49 -51.93 -0.34 0.51 16 24 H 0.42 5.17 8.96 -40.82 -0.37 4.80 16 25 H 0.07 1.64 7.91 -51.93 -0.41 1.23 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.02 0.62 6.19 -51.93 -0.32 0.30 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.07 1.07 6.47 -51.93 -0.34 0.74 16 31 H 0.06 0.65 7.20 -51.93 -0.37 0.28 16 32 H 0.07 1.19 7.00 -51.93 -0.36 0.83 16 LS Contribution 262.86 15.07 3.96 3.96 Total: -1.00 -34.42 262.86 -6.90 -41.32 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.54 Total: 0.12 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.32 Total: 2.29 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.08 Total: -49.98 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.09 Total: -14.59 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -34.42 -6.90 -41.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953002235.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.965 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds