Wall clock time and date at job start Thu Apr 9 2020 14:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.48948 * 2 1 4 4 N 1.47053 * 110.55343 * 237.29633 * 2 1 3 5 5 C 1.33952 * 109.18073 * 241.40983 * 4 2 1 6 6 O 1.21585 * 123.04235 * 179.97438 * 5 4 2 7 7 N 1.33949 * 113.91585 * 359.97438 * 5 4 2 8 8 C 1.46491 * 125.41151 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.46938 * 90.02703 * 8 7 5 10 10 C 1.50704 * 109.46832 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00498 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99553 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00308 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99843 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47295 * 89.99710 * 14 12 10 16 16 H 1.48503 * 109.47184 * 209.99767 * 14 12 10 17 17 H 1.48499 * 109.47215 * 329.99725 * 14 12 10 18 18 C 1.47399 * 109.20864 * 359.92620 * 7 5 4 19 19 H 1.09006 * 110.58842 * 118.64337 * 18 7 5 20 20 C 1.53001 * 110.65415 * 241.55739 * 18 7 5 21 21 H 1.09002 * 109.47153 * 179.30200 * 1 2 3 22 22 H 1.09001 * 109.46832 * 59.30391 * 1 2 3 23 23 H 1.09004 * 109.47261 * 299.30372 * 1 2 3 24 24 H 0.96996 * 125.40794 * 61.39975 * 4 2 1 25 25 H 1.09003 * 109.47335 * 210.02727 * 8 7 5 26 26 H 1.08996 * 109.47589 * 330.02756 * 8 7 5 27 27 H 1.09000 * 109.46856 * 299.99704 * 9 8 7 28 28 H 1.08999 * 109.47177 * 60.00116 * 9 8 7 29 29 H 0.96991 * 120.00313 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.46565 * 174.31901 * 20 18 7 31 31 H 1.09008 * 109.47039 * 294.30847 * 20 18 7 32 32 H 1.08993 * 109.47564 * 54.31253 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9115 1.0211 0.0000 4 7 2.0462 -0.7439 -1.1586 5 6 2.7677 -1.7865 -0.7263 6 8 3.3122 -2.5728 -1.4771 7 7 2.8348 -1.8845 0.6079 8 6 3.5546 -2.9241 1.3475 9 6 4.9908 -2.4642 1.6062 10 6 5.7311 -3.5335 2.3677 11 1 5.2279 -4.4496 2.6395 12 6 7.0511 -3.3422 2.7173 13 7 7.6641 -2.2268 2.3859 14 14 7.9690 -4.6678 3.6605 15 1 8.6164 -5.5991 2.7019 16 1 9.0065 -4.0380 4.5163 17 1 7.0139 -5.4200 4.5132 18 6 2.0715 -0.7790 1.2144 19 1 1.2501 -1.1660 1.8176 20 6 2.9872 0.1099 2.0583 21 1 -0.3633 -1.0276 -0.0125 22 1 -0.3633 0.5246 -0.8837 23 1 -0.3634 0.5030 0.8962 24 1 1.8892 -0.5160 -2.0883 25 1 3.0543 -3.1058 2.2987 26 1 3.5674 -3.8436 0.7624 27 1 5.4911 -2.2826 0.6550 28 1 4.9780 -1.5448 2.1915 29 1 8.5925 -2.0921 2.6322 30 1 2.4269 0.9745 2.4142 31 1 3.3595 -0.4579 2.9111 32 1 3.8275 0.4462 1.4510 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953002236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:09:19 Heat of formation + Delta-G solvation = -30.351631 kcal Electronic energy + Delta-G solvation = -14498.735473 eV Core-core repulsion = 12073.273307 eV Total energy + Delta-G solvation = -2425.462166 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74521 -36.34398 -34.76251 -32.73418 -31.28424 -29.91877 -28.68376 -24.99363 -23.37081 -21.62956 -21.14908 -19.49314 -17.02777 -16.46525 -15.96052 -15.09831 -14.45726 -14.26213 -13.98057 -13.57882 -13.23280 -12.70563 -12.48790 -12.29540 -12.06078 -11.74843 -11.69677 -11.07812 -10.92525 -10.83282 -10.63344 -9.89856 -9.80597 -9.54966 -9.12118 -8.91135 -8.31809 -7.89828 -5.98015 -4.00954 3.11474 3.34678 3.40684 3.43512 3.69813 4.22672 4.44361 4.49634 4.91552 5.05634 5.33630 5.38138 5.40852 5.48936 5.74189 5.77557 5.95878 6.01673 6.15630 6.48227 6.52167 6.62783 6.89438 7.27572 7.45902 7.71005 7.80587 8.04898 8.12703 8.40410 9.04646 9.16459 9.62594 11.13391 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.051002 B = 0.007505 C = 0.007096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.868646 B = 3730.107807 C = 3944.722818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 H 0.087 0.913 4 N -0.746 5.746 5 C 0.695 3.305 6 O -0.590 6.590 7 N -0.620 5.620 8 C 0.151 3.849 9 C 0.008 3.992 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.123 3.877 19 H 0.085 0.915 20 C -0.159 4.159 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.421 0.579 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.020 0.980 28 H 0.023 0.977 29 H 0.260 0.740 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 7.034 -1.232 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.014 3.986 3 H 0.105 0.895 4 N -0.409 5.409 5 C 0.396 3.604 6 O -0.468 6.468 7 N -0.358 5.358 8 C 0.031 3.969 9 C -0.030 4.030 10 C -0.560 4.560 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C 0.018 3.982 19 H 0.103 0.897 20 C -0.217 4.217 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.261 0.739 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.594 6.568 -1.469 15.169 hybrid contribution 0.534 -0.407 0.165 0.691 sum -13.060 6.161 -1.304 14.499 Atomic orbital electron populations 1.22171 0.94368 1.02750 1.02459 1.21959 0.94484 0.96599 0.85513 0.89487 1.45266 1.56887 1.30347 1.08370 1.15982 0.79452 0.81641 0.83339 1.90932 1.52268 1.45847 1.57751 1.47733 1.54038 1.29329 1.04709 1.21635 0.94056 0.87736 0.93497 1.19526 0.89069 0.97070 0.97354 1.21115 0.96410 1.02813 1.35648 0.92529 1.24992 0.97589 0.95583 0.96099 1.69976 1.11550 1.24999 1.46704 0.86569 0.79593 0.81845 0.79830 1.20619 1.21267 1.19838 1.22015 0.94354 0.87707 0.94088 0.89746 1.22199 0.99639 0.98984 1.00913 0.91990 0.92053 0.91112 0.73860 0.91719 0.91115 0.96132 0.95866 0.93010 0.91963 0.90701 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.41 37.16 0.35 -1.00 16 2 C 0.12 1.39 4.02 -67.06 -0.27 1.12 16 3 H 0.09 0.88 7.73 -51.93 -0.40 0.48 16 4 N -0.75 -10.90 6.03 -58.20 -0.35 -11.26 16 5 C 0.70 14.04 8.61 -88.39 -0.76 13.28 16 6 O -0.59 -14.69 17.53 5.29 0.09 -14.60 16 7 N -0.62 -11.86 2.71 -170.98 -0.46 -12.32 16 8 C 0.15 3.30 5.76 -4.04 -0.02 3.27 16 9 C 0.01 0.21 5.16 -27.88 -0.14 0.06 16 10 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 14 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.12 1.73 3.73 -66.86 -0.25 1.48 16 19 H 0.08 1.02 7.73 -51.93 -0.40 0.62 16 20 C -0.16 -2.23 8.21 37.16 0.31 -1.93 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.42 5.17 8.96 -40.82 -0.37 4.81 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 1.64 7.91 -51.93 -0.41 1.23 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.62 6.31 -51.93 -0.33 0.29 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.19 7.30 -51.92 -0.38 0.81 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 268.87 15.07 4.05 4.05 Total: -1.00 -34.53 268.87 -6.94 -41.47 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.79 Total: -0.37 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.20 Total: 2.67 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.08 Total: -50.11 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.09 Total: -14.60 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -34.53 -6.94 -41.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953002236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.120 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds