Wall clock time and date at job start Thu Apr 9 2020 14:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47540 * 2 1 4 4 C 1.50699 * 109.47330 * 239.99761 * 2 1 3 5 5 H 1.08002 * 120.00492 * 245.43744 * 4 2 1 6 6 C 1.37875 * 120.00141 * 65.43037 * 4 2 1 7 7 N 1.31509 * 120.00641 * 196.51808 * 6 4 2 8 8 Si 1.86807 * 119.99552 * 16.52036 * 6 4 2 9 9 H 1.48499 * 109.46966 * 95.50035 * 8 6 4 10 10 H 1.48503 * 109.47062 * 215.49657 * 8 6 4 11 11 H 1.48502 * 109.47007 * 335.49660 * 8 6 4 12 12 N 1.46905 * 109.47299 * 120.00181 * 2 1 3 13 13 C 1.47201 * 110.99963 * 62.19079 * 12 2 1 14 14 C 1.51300 * 108.46270 * 177.88752 * 13 12 2 15 15 O 1.20824 * 121.09219 * 131.57460 * 14 13 12 16 16 O 1.35098 * 117.81222 * 311.85672 * 14 13 12 17 17 C 1.45331 * 115.35046 * 47.98947 * 16 14 13 18 18 C 1.47011 * 111.00180 * 185.78397 * 12 2 1 19 19 H 1.09002 * 109.47185 * 294.68835 * 18 12 2 20 20 C 1.52998 * 109.47654 * 54.70200 * 18 12 2 21 21 H 1.08997 * 109.47402 * 300.89330 * 1 2 3 22 22 H 1.09002 * 109.47283 * 60.89483 * 1 2 3 23 23 H 1.09006 * 109.47258 * 180.89250 * 1 2 3 24 24 H 0.97003 * 120.00685 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.63781 * 58.20207 * 13 12 2 26 26 H 1.08991 * 109.64230 * 297.58118 * 13 12 2 27 27 H 1.08999 * 109.64851 * 189.46443 * 17 16 14 28 28 H 1.09005 * 109.49828 * 69.22835 * 17 16 14 29 29 H 1.08997 * 109.47120 * 53.31605 * 20 18 12 30 30 H 1.08999 * 109.47337 * 173.31600 * 20 18 12 31 31 H 1.09003 * 109.47038 * 293.31302 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5789 -1.6369 -1.1338 6 6 1.7941 -0.1778 -2.4796 7 7 1.9320 -0.9273 -3.5514 8 14 1.2753 1.6087 -2.6497 9 1 2.4703 2.4474 -2.9214 10 1 0.3128 1.7399 -3.7729 11 1 0.6305 2.0590 -1.3901 12 7 2.0197 -0.6925 1.1994 13 6 1.5911 -2.1008 1.2074 14 6 2.1681 -2.7703 2.4354 15 8 1.4762 -3.4429 3.1626 16 8 3.4810 -2.5865 2.6953 17 6 3.9417 -1.2097 2.6294 18 6 3.4827 -0.5935 1.3046 19 1 3.9437 -1.1300 0.4753 20 6 3.8993 0.8778 1.2549 21 1 -0.3634 0.5276 0.8818 22 1 -0.3634 0.4999 -0.8979 23 1 -0.3634 -1.0276 0.0160 24 1 1.7648 -0.5525 -4.4303 25 1 1.9584 -2.6006 0.3111 26 1 0.5029 -2.1523 1.2393 27 1 5.0299 -1.1842 2.6861 28 1 3.5195 -0.6446 3.4604 29 1 3.3473 1.4374 2.0100 30 1 4.9683 0.9596 1.4514 31 1 3.6791 1.2846 0.2679 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251796920.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:00 Heat of formation + Delta-G solvation = -70.076988 kcal Electronic energy + Delta-G solvation = -15165.914577 eV Core-core repulsion = 12641.011128 eV Total energy + Delta-G solvation = -2524.903448 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.27730 -37.62906 -36.32382 -33.02205 -31.79333 -29.94898 -26.50033 -25.91269 -25.06535 -21.93908 -20.26203 -19.14636 -17.47196 -16.48253 -16.42160 -15.23899 -15.01439 -14.76539 -14.25444 -13.49674 -13.27131 -12.77252 -12.61238 -12.32127 -12.03394 -11.78764 -11.39899 -11.10240 -11.02056 -10.86580 -10.64199 -10.21705 -10.15535 -9.77601 -9.63117 -9.29863 -8.63551 -7.55983 -6.28981 -4.26786 2.18435 3.15461 3.26630 3.28520 3.64778 4.26154 4.39127 4.69879 5.02322 5.06826 5.39167 5.40830 5.72059 5.84845 5.90387 6.03235 6.21036 6.34010 6.44952 6.49135 6.53109 6.61452 6.98054 7.02833 7.29810 7.34876 7.70110 7.72345 7.84898 8.25133 8.73155 9.36510 10.83380 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038574 B = 0.011045 C = 0.010190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.703542 B = 2534.562387 C = 2747.130736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.560 4.560 5 H 0.075 0.925 6 C 0.084 3.916 7 N -0.884 5.884 8 Si 0.863 3.137 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.252 1.252 12 N -0.518 5.518 13 C 0.010 3.990 14 C 0.497 3.503 15 O -0.472 6.472 16 O -0.385 6.385 17 C 0.085 3.915 18 C 0.040 3.960 19 H 0.071 0.929 20 C -0.139 4.139 21 H 0.032 0.968 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.265 0.735 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.669 3.708 7.908 9.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.598 4.598 5 H 0.093 0.907 6 C -0.120 4.120 7 N -0.520 5.520 8 Si 0.689 3.311 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.176 1.176 12 N -0.245 5.245 13 C -0.119 4.119 14 C 0.338 3.662 15 O -0.353 6.353 16 O -0.305 6.305 17 C 0.011 3.989 18 C -0.069 4.069 19 H 0.089 0.911 20 C -0.196 4.196 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.231 3.456 8.528 9.469 hybrid contribution 0.062 0.598 -1.269 1.404 sum 2.293 4.054 7.259 8.625 Atomic orbital electron populations 1.22131 0.97794 1.00603 0.99243 1.19785 0.92111 0.95019 0.86259 0.93304 1.21427 1.38154 1.10286 0.89944 0.90729 1.24892 0.93959 0.97473 0.95703 1.69995 1.47869 1.35502 0.98608 0.87156 0.78890 0.86328 0.78681 1.20560 1.21173 1.17639 1.63042 1.09204 1.10144 1.42143 1.22912 1.02695 0.91161 0.95149 1.23636 0.79777 0.77865 0.84885 1.90573 1.56764 1.37979 1.49945 1.86514 1.26065 1.30378 1.87560 1.23487 0.99884 0.77277 0.98271 1.22201 0.90295 0.98089 0.96280 0.91126 1.21725 1.00057 0.94358 1.03495 0.94843 0.93226 0.93300 0.92480 0.88732 0.87205 0.87523 0.90982 0.92210 0.92567 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.42 37.16 0.31 -2.54 16 2 C 0.18 3.72 1.53 -68.86 -0.11 3.61 16 3 H 0.05 1.04 4.53 -51.93 -0.24 0.81 16 4 C -0.56 -14.02 7.53 -34.44 -0.26 -14.28 16 5 H 0.07 2.05 6.04 -52.49 -0.32 1.73 16 6 C 0.08 2.23 5.34 -17.82 -0.10 2.13 16 7 N -0.88 -25.23 13.96 55.43 0.77 -24.46 16 8 Si 0.86 19.60 25.84 -169.99 -4.39 15.20 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.25 -5.37 5.55 56.52 0.31 -5.05 16 12 N -0.52 -9.81 4.54 -220.74 -1.00 -10.81 16 13 C 0.01 0.19 5.07 -4.52 -0.02 0.16 16 14 C 0.50 9.51 7.75 36.30 0.28 9.80 16 15 O -0.47 -9.98 17.95 -18.63 -0.33 -10.32 16 16 O -0.39 -6.84 10.64 -41.57 -0.44 -7.28 16 17 C 0.08 1.21 6.52 37.23 0.24 1.45 16 18 C 0.04 0.67 2.26 -67.58 -0.15 0.52 16 19 H 0.07 1.34 7.12 -51.93 -0.37 0.97 16 20 C -0.14 -2.02 8.56 37.16 0.32 -1.71 16 21 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 1.04 5.17 -51.93 -0.27 0.77 16 23 H 0.05 0.98 6.46 -51.93 -0.34 0.65 16 24 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.10 1.97 6.20 -51.93 -0.32 1.65 16 26 H 0.11 2.07 6.48 -51.93 -0.34 1.73 16 27 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 LS Contribution 243.31 15.07 3.67 3.67 Total: -1.00 -28.83 243.31 -5.08 -33.91 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.86 Total: 0.93 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 0.52 Total: -0.84 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.23 Total: -35.27 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.78 Total: -17.60 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.39 Total: 15.20 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.83 -5.08 -33.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251796920.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.169 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds