Wall clock time and date at job start Thu Apr 9 2020 14:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47044 * 2 1 4 4 C 1.50706 * 109.47076 * 240.00048 * 2 1 3 5 5 H 1.07997 * 119.99849 * 245.40681 * 4 2 1 6 6 C 1.37883 * 119.99628 * 65.40344 * 4 2 1 7 7 N 1.31506 * 119.99867 * 185.20653 * 6 4 2 8 8 Si 1.86800 * 120.00127 * 5.21072 * 6 4 2 9 9 H 1.48495 * 109.47462 * 269.99690 * 8 6 4 10 10 H 1.48503 * 109.47065 * 30.00011 * 8 6 4 11 11 H 1.48503 * 109.46888 * 149.99394 * 8 6 4 12 12 N 1.46500 * 109.47216 * 120.00128 * 2 1 3 13 13 C 1.33878 * 118.72843 * 59.72913 * 12 2 1 14 14 O 1.21279 * 118.83218 * 1.91151 * 13 12 2 15 15 C 1.50328 * 122.34259 * 181.65679 * 13 12 2 16 16 O 1.42972 * 109.85785 * 344.55071 * 15 13 12 17 17 C 1.43239 * 112.98790 * 49.40095 * 16 15 13 18 18 C 1.46087 * 118.73140 * 239.99881 * 12 2 1 19 19 H 1.09002 * 109.39345 * 281.75994 * 18 12 2 20 20 C 1.53004 * 109.39298 * 41.47993 * 18 12 2 21 21 H 1.09000 * 109.47093 * 294.74139 * 1 2 3 22 22 H 1.08997 * 109.47753 * 54.74527 * 1 2 3 23 23 H 1.09006 * 109.47479 * 174.74584 * 1 2 3 24 24 H 0.97005 * 120.00027 * 354.99794 * 7 6 4 25 25 H 1.09002 * 109.55402 * 224.33485 * 15 13 12 26 26 H 1.08997 * 109.23006 * 104.56598 * 15 13 12 27 27 H 1.09005 * 109.60652 * 171.88237 * 17 16 15 28 28 H 1.08994 * 109.74528 * 51.46810 * 17 16 15 29 29 H 1.08997 * 109.47354 * 60.00368 * 20 18 12 30 30 H 1.09004 * 109.46910 * 180.02562 * 20 18 12 31 31 H 1.09001 * 109.47366 * 300.00063 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5793 -1.6366 -1.1338 6 6 1.7935 -0.1779 -2.4797 7 7 2.1409 -0.8471 -3.5572 8 14 0.9765 1.4942 -2.6417 9 1 -0.4969 1.3210 -2.7071 10 1 1.3248 2.3313 -1.4656 11 1 1.4523 2.1595 -3.8811 12 7 2.0183 -0.6906 1.1961 13 6 1.6749 -1.9707 1.3854 14 8 1.0008 -2.5259 0.5439 15 6 2.0998 -2.7461 2.6012 16 8 3.1595 -2.0579 3.2702 17 6 2.8748 -0.6716 3.4908 18 6 2.8563 0.0458 2.1393 19 1 3.8720 0.1083 1.7487 20 6 2.2962 1.4580 2.3212 21 1 -0.3633 0.4301 0.9333 22 1 -0.3634 0.5931 -0.8391 23 1 -0.3634 -1.0234 -0.0941 24 1 2.6299 -1.6807 -3.4737 25 1 2.4434 -3.7359 2.3009 26 1 1.2506 -2.8479 3.2769 27 1 3.6466 -0.2361 4.1255 28 1 1.9030 -0.5676 3.9733 29 1 1.2789 1.3984 2.7079 30 1 2.9209 2.0088 3.0245 31 1 2.2902 1.9730 1.3606 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259907414.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:07 Heat of formation + Delta-G solvation = -68.446108 kcal Electronic energy + Delta-G solvation = -15314.880487 eV Core-core repulsion = 12790.047759 eV Total energy + Delta-G solvation = -2524.832728 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.20075 -37.25500 -35.75471 -33.12317 -31.24148 -29.78015 -27.68416 -25.73479 -24.58750 -22.11229 -21.01094 -18.35658 -17.83643 -16.77859 -16.15269 -15.25946 -15.03633 -14.44910 -14.23259 -13.55765 -13.14216 -12.85866 -12.39585 -12.25667 -12.15770 -11.73817 -11.67878 -11.27206 -11.03388 -10.78651 -10.42856 -10.12534 -9.99574 -9.72724 -8.91929 -8.50763 -8.32298 -7.78722 -6.33659 -3.96649 3.30564 3.35849 3.39553 3.52719 3.56245 3.99661 4.50245 4.71546 5.01359 5.11717 5.21442 5.36548 5.40063 5.50801 5.60271 5.69552 5.86992 6.10786 6.24357 6.41179 6.44694 6.69492 6.69614 6.93065 7.29402 7.51144 7.93423 8.37167 8.50738 8.91580 9.07183 9.71299 11.04861 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038501 B = 0.012164 C = 0.010595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.080448 B = 2301.374244 C = 2642.220919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.235 3.765 3 H 0.046 0.954 4 C -0.577 4.577 5 H 0.060 0.940 6 C 0.024 3.976 7 N -0.915 5.915 8 Si 1.055 2.945 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.289 1.289 12 N -0.583 5.583 13 C 0.477 3.523 14 O -0.518 6.518 15 C 0.047 3.953 16 O -0.376 6.376 17 C 0.050 3.950 18 C 0.106 3.894 19 H 0.078 0.922 20 C -0.164 4.164 21 H 0.022 0.978 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.267 0.733 25 H 0.122 0.878 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 4.009 14.864 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.134 3.866 3 H 0.063 0.937 4 C -0.616 4.616 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.885 3.115 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.216 1.216 12 N -0.316 5.316 13 C 0.262 3.738 14 O -0.394 6.394 15 C -0.033 4.033 16 O -0.294 6.294 17 C -0.027 4.027 18 C 0.001 3.999 19 H 0.096 0.904 20 C -0.222 4.222 21 H 0.041 0.959 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.139 0.861 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.399 4.707 13.364 14.174 hybrid contribution 0.386 -0.991 1.042 1.488 sum -0.013 3.716 14.405 14.877 Atomic orbital electron populations 1.22479 0.98888 1.02868 0.98032 1.19382 0.90665 0.93192 0.83351 0.93663 1.22189 1.38825 1.09950 0.90664 0.92158 1.25676 0.96875 1.03547 0.91883 1.70758 1.37212 1.16911 1.30107 0.83873 0.76484 0.75638 0.75473 1.21047 1.20827 1.21584 1.47743 1.49568 1.10840 1.23477 1.20546 0.81982 0.82810 0.88430 1.90741 1.38493 1.67137 1.43078 1.22907 0.91402 0.97113 0.91856 1.88113 1.41484 1.21587 1.78195 1.23035 1.02058 0.81914 0.95697 1.21591 0.95930 0.92531 0.89833 0.90444 1.22180 1.01253 0.95527 1.03200 0.95921 0.93402 0.90825 0.92273 0.86057 0.90379 0.87455 0.92328 0.92163 0.91562 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 8.60 37.16 0.32 -3.50 16 2 C 0.24 5.70 1.71 -69.08 -0.12 5.58 16 3 H 0.05 1.06 4.25 -51.93 -0.22 0.84 16 4 C -0.58 -16.97 7.91 -34.44 -0.27 -17.25 16 5 H 0.06 2.00 7.41 -52.49 -0.39 1.61 16 6 C 0.02 0.71 5.43 -17.82 -0.10 0.62 16 7 N -0.91 -29.33 13.69 55.43 0.76 -28.57 16 8 Si 1.06 25.80 25.29 -169.99 -4.30 21.50 16 9 H -0.28 -6.69 6.81 56.52 0.38 -6.30 16 10 H -0.28 -6.17 6.36 56.52 0.36 -5.81 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 N -0.58 -12.25 2.68 -160.59 -0.43 -12.68 16 13 C 0.48 10.26 6.85 -11.57 -0.08 10.19 16 14 O -0.52 -13.49 13.64 5.56 0.08 -13.41 16 15 C 0.05 0.75 6.99 35.83 0.25 1.00 16 16 O -0.38 -5.78 10.86 -35.23 -0.38 -6.16 16 17 C 0.05 0.64 6.19 37.17 0.23 0.87 16 18 C 0.11 1.68 3.57 -68.14 -0.24 1.44 16 19 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 20 C -0.16 -2.18 8.79 37.16 0.33 -1.85 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 1.10 4.41 -51.93 -0.23 0.88 16 23 H 0.07 1.88 6.21 -51.93 -0.32 1.56 16 24 H 0.27 8.67 8.72 -40.82 -0.36 8.31 16 25 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.67 8.07 -51.93 -0.42 0.26 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.13 6.14 -51.93 -0.32 0.81 16 LS Contribution 244.67 15.07 3.69 3.69 Total: -1.00 -34.60 244.67 -4.34 -38.94 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.07 Total: -0.40 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 0.32 Total: -2.90 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.33 Total: -41.25 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.31 Total: -19.57 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -4.30 Total: 21.50 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -34.60 -4.34 -38.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907414.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.508 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds