Wall clock time and date at job start Thu Apr 9 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46788 * 2 1 4 4 O 1.21283 * 120.00509 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99922 * 180.27463 * 3 2 1 6 6 C 1.47161 * 120.97706 * 355.75410 * 5 3 2 7 7 C 1.52881 * 108.60533 * 230.49818 * 6 5 3 8 8 O 1.42958 * 109.29692 * 307.94046 * 7 6 5 9 9 C 1.42955 * 114.16915 * 62.44844 * 8 7 6 10 10 C 1.47143 * 120.98369 * 176.03721 * 5 3 2 11 11 H 1.09008 * 109.68136 * 249.16309 * 10 5 3 12 12 C 1.50702 * 109.68320 * 9.67970 * 10 5 3 13 13 H 1.07997 * 119.99781 * 36.17912 * 12 10 5 14 14 C 1.37880 * 119.99942 * 216.18065 * 12 10 5 15 15 N 1.31509 * 119.99964 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 119.99651 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47411 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47025 * 120.00373 * 16 14 12 19 19 H 1.48497 * 109.47413 * 239.99759 * 16 14 12 20 20 H 1.09000 * 109.47158 * 300.00508 * 1 2 3 21 21 H 1.09008 * 109.47182 * 60.00100 * 1 2 3 22 22 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46873 * 239.99854 * 2 1 3 24 24 H 1.09002 * 109.46911 * 119.99564 * 2 1 3 25 25 H 1.08999 * 109.68299 * 350.28609 * 6 5 3 26 26 H 1.09000 * 109.68068 * 110.83620 * 6 5 3 27 27 H 1.08997 * 109.58163 * 187.92264 * 7 6 5 28 28 H 1.09002 * 109.36165 * 67.81995 * 7 6 5 29 29 H 1.09006 * 109.51374 * 177.49460 * 9 8 7 30 30 H 1.09005 * 109.55327 * 57.36977 * 9 8 7 31 31 H 0.97003 * 119.99956 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0056 6 6 4.3324 0.5685 0.0817 7 6 5.3358 0.8935 1.1884 8 8 5.8702 2.2017 0.9724 9 6 4.8974 3.2478 1.0277 10 6 3.8717 3.0431 -0.0929 11 1 4.3498 3.1955 -1.0606 12 6 2.7367 4.0207 0.0720 13 1 1.9289 3.8002 0.7541 14 6 2.7295 5.1965 -0.6480 15 7 3.7134 5.4652 -1.4782 16 14 1.3223 6.4079 -0.4441 17 1 0.3492 5.8747 0.5427 18 1 1.8541 7.7078 0.0384 19 1 0.6452 6.6047 -1.7510 20 1 -0.3633 0.5139 0.8899 21 1 -0.3634 0.5139 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8165 -0.3624 0.3171 26 1 4.8577 0.4675 -0.8681 27 1 6.1445 0.1628 1.1744 28 1 4.8315 0.8611 2.1542 29 1 5.3909 4.2111 0.8981 30 1 4.3916 3.2249 1.9930 31 1 3.7086 6.2926 -1.9845 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259907877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:12 Heat of formation + Delta-G solvation = -64.661848 kcal Electronic energy + Delta-G solvation = -15126.071336 eV Core-core repulsion = 12601.402705 eV Total energy + Delta-G solvation = -2524.668630 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.40310 -37.36865 -33.82353 -33.23987 -31.91749 -30.14183 -27.31391 -24.85574 -23.97703 -22.43675 -20.66981 -18.17597 -17.24436 -15.77902 -15.45534 -15.04361 -14.84265 -14.32901 -14.09574 -13.89128 -13.23922 -12.98754 -12.20885 -11.96528 -11.72883 -11.37268 -11.20336 -10.99134 -10.85642 -10.68797 -10.46428 -10.20892 -10.07825 -9.47330 -9.14345 -8.58470 -7.74269 -7.30486 -5.97027 -3.87231 3.38472 3.46311 3.57087 3.67384 3.94996 4.49894 4.64567 5.18475 5.31405 5.41052 5.47093 5.49452 5.57639 5.61769 5.83513 6.03128 6.08715 6.18574 6.29694 6.37916 6.55465 6.66493 6.83297 7.39136 7.65478 7.85496 8.09526 8.14048 8.70590 9.19703 9.38110 9.70483 11.12994 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.014706 C = 0.009841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.365406 B = 1903.578516 C = 2844.645006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C 0.504 3.496 4 O -0.499 6.499 5 N -0.615 5.615 6 C 0.072 3.928 7 C 0.053 3.947 8 O -0.398 6.398 9 C 0.059 3.941 10 C 0.229 3.771 11 H 0.066 0.934 12 C -0.484 4.484 13 H 0.093 0.907 14 C 0.054 3.946 15 N -0.904 5.904 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.287 1.287 20 H 0.058 0.942 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.037 0.963 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -11.057 3.661 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C 0.290 3.710 4 O -0.373 6.373 5 N -0.351 5.351 6 C -0.053 4.053 7 C -0.025 4.025 8 O -0.317 6.317 9 C -0.018 4.018 10 C 0.129 3.871 11 H 0.084 0.916 12 C -0.522 4.522 13 H 0.111 0.889 14 C -0.146 4.146 15 N -0.545 5.545 16 Si 0.733 3.267 17 H -0.195 1.195 18 H -0.215 1.215 19 H -0.213 1.213 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.026 -10.358 3.502 10.934 hybrid contribution -0.794 0.463 -0.042 0.920 sum -0.767 -9.895 3.459 10.510 Atomic orbital electron populations 1.21480 0.93887 1.00369 1.03269 1.21802 0.97997 0.96740 1.02669 1.20439 0.82554 0.90313 0.77701 1.90783 1.55221 1.44213 1.47111 1.48747 1.04684 1.08400 1.73220 1.22210 0.92217 0.91166 0.99712 1.22679 0.96611 0.86548 0.96710 1.87862 1.35998 1.14786 1.93019 1.23491 0.90031 0.89392 0.98927 1.19882 0.93989 0.77083 0.96117 0.91590 1.21681 1.05948 1.00149 1.24436 0.88893 1.24984 0.96114 0.98474 0.95048 1.69946 1.31891 1.25220 1.27405 0.86319 0.82414 0.80002 0.77975 1.19517 1.21486 1.21304 0.92254 0.92103 0.93122 0.90165 0.90377 0.90438 0.91688 0.89194 0.93798 0.88460 0.94512 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.20 37.16 0.34 -1.60 16 2 C -0.15 -2.32 4.84 -27.88 -0.14 -2.45 16 3 C 0.50 10.84 7.62 -10.98 -0.08 10.76 16 4 O -0.50 -12.98 11.95 5.55 0.07 -12.92 16 5 N -0.61 -13.26 3.03 -166.30 -0.50 -13.77 16 6 C 0.07 1.16 6.50 -3.74 -0.02 1.14 16 7 C 0.05 0.84 6.97 37.10 0.26 1.10 16 8 O -0.40 -8.16 10.74 -35.23 -0.38 -8.54 16 9 C 0.06 1.35 6.27 37.31 0.23 1.58 16 10 C 0.23 5.87 3.20 -68.58 -0.22 5.65 16 11 H 0.07 1.91 7.27 -51.92 -0.38 1.53 16 12 C -0.48 -13.81 6.37 -34.44 -0.22 -14.03 16 13 H 0.09 2.79 5.58 -52.72 -0.29 2.49 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.89 12.77 55.43 0.71 -26.18 16 16 Si 0.90 23.07 29.54 -169.99 -5.02 18.05 16 17 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 21 H 0.06 0.97 8.10 -51.92 -0.42 0.55 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 24 H 0.08 1.01 7.50 -51.93 -0.39 0.62 16 25 H 0.08 0.98 6.08 -51.93 -0.32 0.66 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.10 2.33 8.14 -51.93 -0.42 1.91 16 30 H 0.04 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 253.69 15.07 3.82 3.82 Total: -1.00 -32.50 253.69 -5.56 -38.06 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.31 Total: -2.15 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 0.05 Total: 3.63 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.20 Total: -39.95 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.31 Total: -21.46 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.50 -5.56 -38.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.604 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds