Wall clock time and date at job start Thu Apr 9 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46788 * 2 1 4 4 O 1.21283 * 120.00509 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99922 * 180.27463 * 3 2 1 6 6 C 1.47161 * 120.97706 * 355.75410 * 5 3 2 7 7 C 1.52881 * 108.60533 * 230.49818 * 6 5 3 8 8 O 1.42958 * 109.29692 * 307.94046 * 7 6 5 9 9 C 1.42955 * 114.16915 * 62.44844 * 8 7 6 10 10 C 1.47143 * 120.98369 * 176.03721 * 5 3 2 11 11 H 1.09008 * 109.68136 * 249.16309 * 10 5 3 12 12 C 1.50702 * 109.68320 * 9.67970 * 10 5 3 13 13 H 1.07997 * 119.99781 * 36.17912 * 12 10 5 14 14 C 1.37880 * 119.99942 * 216.18065 * 12 10 5 15 15 N 1.31509 * 119.99964 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 119.99651 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47411 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47025 * 120.00373 * 16 14 12 19 19 H 1.48497 * 109.47413 * 239.99759 * 16 14 12 20 20 H 1.09000 * 109.47158 * 300.00508 * 1 2 3 21 21 H 1.09008 * 109.47182 * 60.00100 * 1 2 3 22 22 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46873 * 239.99854 * 2 1 3 24 24 H 1.09002 * 109.46911 * 119.99564 * 2 1 3 25 25 H 1.08999 * 109.68299 * 350.28609 * 6 5 3 26 26 H 1.09000 * 109.68068 * 110.83620 * 6 5 3 27 27 H 1.08997 * 109.58163 * 187.92264 * 7 6 5 28 28 H 1.09002 * 109.36165 * 67.81995 * 7 6 5 29 29 H 1.09006 * 109.51374 * 177.49460 * 9 8 7 30 30 H 1.09005 * 109.55327 * 57.36977 * 9 8 7 31 31 H 0.97003 * 119.99956 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0056 6 6 4.3324 0.5685 0.0817 7 6 5.3358 0.8935 1.1884 8 8 5.8702 2.2017 0.9724 9 6 4.8974 3.2478 1.0277 10 6 3.8717 3.0431 -0.0929 11 1 4.3498 3.1955 -1.0606 12 6 2.7367 4.0207 0.0720 13 1 1.9289 3.8002 0.7541 14 6 2.7295 5.1965 -0.6480 15 7 3.7134 5.4652 -1.4782 16 14 1.3223 6.4079 -0.4441 17 1 0.3492 5.8747 0.5427 18 1 1.8541 7.7078 0.0384 19 1 0.6452 6.6047 -1.7510 20 1 -0.3633 0.5139 0.8899 21 1 -0.3634 0.5139 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8165 -0.3624 0.3171 26 1 4.8577 0.4675 -0.8681 27 1 6.1445 0.1628 1.1744 28 1 4.8315 0.8611 2.1542 29 1 5.3909 4.2111 0.8981 30 1 4.3916 3.2249 1.9930 31 1 3.7086 6.2926 -1.9845 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259907877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:12 Heat of formation + Delta-G solvation = -88.496275 kcal Electronic energy + Delta-G solvation = -15127.104874 eV Core-core repulsion = 12601.402705 eV Total energy + Delta-G solvation = -2525.702169 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06274 -39.00496 -35.59894 -35.07574 -33.42036 -31.85409 -28.95995 -26.83548 -25.42270 -23.99721 -22.31441 -19.78856 -19.17972 -17.44852 -17.15726 -16.72606 -16.38771 -16.16194 -15.65196 -15.52749 -14.74234 -14.62945 -14.09641 -13.57071 -13.10085 -12.98770 -12.83532 -12.70899 -12.64546 -12.32534 -11.99219 -11.92954 -11.70250 -11.32366 -10.92461 -10.72757 -9.63398 -9.10090 -8.15955 -6.09139 1.33850 1.36342 1.51781 2.05486 2.33101 2.46637 3.08126 3.21328 3.83891 4.09541 4.23061 4.30721 4.32243 4.37135 4.49585 4.66958 4.73155 4.86356 4.95049 5.02063 5.05895 5.12423 5.39910 5.40353 5.71820 5.91507 6.02465 6.40190 6.93654 7.01745 7.44749 7.76344 8.94329 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.014706 C = 0.009841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.365406 B = 1903.578516 C = 2844.645006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C 0.487 3.513 4 O -0.558 6.558 5 N -0.623 5.623 6 C 0.067 3.933 7 C 0.043 3.957 8 O -0.409 6.409 9 C 0.077 3.923 10 C 0.229 3.771 11 H 0.025 0.975 12 C -0.486 4.486 13 H 0.076 0.924 14 C 0.002 3.998 15 N -0.936 5.936 16 Si 0.958 3.042 17 H -0.278 1.278 18 H -0.274 1.274 19 H -0.287 1.287 20 H 0.042 0.958 21 H 0.036 0.964 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.116 0.884 25 H 0.127 0.873 26 H 0.068 0.932 27 H 0.136 0.864 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -13.772 4.475 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.276 3.724 4 O -0.436 6.436 5 N -0.358 5.358 6 C -0.055 4.055 7 C -0.033 4.033 8 O -0.328 6.328 9 C 0.000 4.000 10 C 0.127 3.873 11 H 0.043 0.957 12 C -0.524 4.524 13 H 0.094 0.906 14 C -0.194 4.194 15 N -0.578 5.578 16 Si 0.785 3.215 17 H -0.203 1.203 18 H -0.199 1.199 19 H -0.213 1.213 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.111 0.889 23 H 0.126 0.874 24 H 0.134 0.866 25 H 0.144 0.856 26 H 0.086 0.914 27 H 0.154 0.846 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.102 -13.122 4.328 13.817 hybrid contribution -0.785 1.139 -0.281 1.412 sum -0.683 -11.982 4.047 12.666 Atomic orbital electron populations 1.21495 0.93617 1.02398 1.01366 1.21775 0.98087 0.92026 1.05661 1.21635 0.81954 0.92734 0.76099 1.90740 1.56399 1.46863 1.49579 1.48732 1.06096 1.08148 1.72838 1.22562 0.91629 0.91140 1.00208 1.23117 0.98349 0.84891 0.96989 1.87835 1.35531 1.16297 1.93157 1.22958 0.89571 0.89793 0.97708 1.19525 0.93490 0.79335 0.94950 0.95748 1.21817 1.06055 1.00862 1.23709 0.90575 1.25662 0.98240 1.00150 0.95383 1.70045 1.33360 1.25798 1.28624 0.85488 0.79777 0.78690 0.77509 1.20252 1.19948 1.21323 0.93919 0.94444 0.88940 0.87386 0.86613 0.85554 0.91401 0.84624 0.92790 0.90606 0.94332 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.20 71.98 0.66 -2.82 16 2 C -0.14 -3.61 4.84 29.85 0.14 -3.46 16 3 C 0.49 20.40 7.62 87.66 0.67 21.07 16 4 O -0.56 -29.57 11.95 -3.04 -0.04 -29.61 16 5 N -0.62 -26.20 3.03 -798.44 -2.42 -28.62 16 6 C 0.07 1.93 6.50 86.21 0.56 2.49 16 7 C 0.04 1.22 6.97 71.94 0.50 1.72 16 8 O -0.41 -16.21 10.74 -148.98 -1.60 -17.81 16 9 C 0.08 3.60 6.27 72.08 0.45 4.05 16 10 C 0.23 12.00 3.20 44.22 0.14 12.14 16 11 H 0.02 1.48 7.27 -2.38 -0.02 1.46 16 12 C -0.49 -28.66 6.37 25.60 0.16 -28.50 16 13 H 0.08 4.74 5.58 -6.63 -0.04 4.70 16 14 C 0.00 0.15 5.46 84.66 0.46 0.61 16 15 N -0.94 -57.67 12.77 21.45 0.27 -57.39 16 16 Si 0.96 48.82 29.54 68.60 2.03 50.85 16 17 H -0.28 -14.28 7.11 99.48 0.71 -13.58 16 18 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 20 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 21 H 0.04 1.15 8.10 -2.38 -0.02 1.13 16 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.11 2.35 8.13 -2.39 -0.02 2.33 16 24 H 0.12 2.27 7.50 -2.39 -0.02 2.26 16 25 H 0.13 2.41 6.08 -2.39 -0.01 2.39 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 3.78 8.14 -2.38 -0.02 3.76 16 30 H 0.04 1.75 8.13 -2.38 -0.02 1.73 16 31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -75.10 253.69 3.09 -72.00 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.09 Total: 3.28 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 3.76 Total: 7.30 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.14 Total: -86.01 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -1.64 Total: -47.42 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.85 kcal Total: -75.10 3.09 -72.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.493 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds