Wall clock time and date at job start Thu Apr 9 2020 14:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00521 * 2 1 4 4 N 1.34784 * 119.99774 * 180.27106 * 2 1 3 5 5 C 1.47069 * 136.05474 * 359.72526 * 4 2 1 6 6 C 1.53495 * 87.98587 * 207.08488 * 5 4 2 7 7 C 1.47068 * 136.05818 * 179.35620 * 4 2 1 8 8 H 1.08999 * 113.46642 * 267.69604 * 7 4 2 9 9 C 1.52999 * 113.46486 * 38.13472 * 7 4 2 10 10 O 1.42898 * 109.47498 * 275.49407 * 9 7 4 11 11 C 1.42899 * 114.00254 * 180.02562 * 10 9 7 12 12 C 1.50693 * 109.46999 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00668 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99829 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99936 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99978 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47183 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47127 * 120.00020 * 16 14 12 19 19 H 1.48501 * 109.47176 * 239.99898 * 16 14 12 20 20 H 1.09000 * 109.47347 * 269.72909 * 1 2 3 21 21 H 1.09003 * 109.46583 * 29.72664 * 1 2 3 22 22 H 1.08996 * 109.47395 * 149.72482 * 1 2 3 23 23 H 1.08994 * 113.46798 * 321.87116 * 5 4 2 24 24 H 1.08999 * 113.46353 * 92.24602 * 5 4 2 25 25 H 1.09005 * 114.20375 * 87.51756 * 6 5 4 26 26 H 1.08998 * 114.20851 * 220.15153 * 6 5 4 27 27 H 1.09004 * 109.47358 * 35.49978 * 9 7 4 28 28 H 1.09007 * 109.46731 * 155.49393 * 9 7 4 29 29 H 1.09000 * 109.46711 * 300.00164 * 11 10 9 30 30 H 1.08994 * 109.46992 * 60.00024 * 11 10 9 31 31 H 0.97004 * 120.00019 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0055 5 6 1.8264 -2.5946 -0.0074 6 6 3.1678 -2.8731 0.6849 7 6 3.5941 -1.5741 -0.0189 8 1 3.9903 -1.7337 -1.0217 9 6 4.4933 -0.6811 0.8382 10 8 4.8899 0.4635 0.0801 11 6 5.7373 1.3672 0.7922 12 6 6.0911 2.5308 -0.0977 13 1 5.7076 2.5755 -1.1063 14 6 6.9046 3.5384 0.3758 15 7 7.3712 3.4842 1.6041 16 14 7.3438 4.9804 -0.7275 17 1 6.6960 4.8054 -2.0523 18 1 6.8666 6.2421 -0.1066 19 1 8.8174 5.0404 -0.9006 20 1 -0.3634 -0.0049 1.0276 21 1 -0.3632 0.8925 -0.5096 22 1 -0.3634 -0.8875 -0.5181 23 1 0.9611 -2.8278 0.6130 24 1 1.7556 -3.0229 -1.0072 25 1 3.1321 -2.8051 1.7722 26 1 3.6794 -3.7659 0.3255 27 1 3.9465 -0.3584 1.7243 28 1 5.3783 -1.2406 1.1413 29 1 5.2166 1.7324 1.6774 30 1 6.6480 0.8500 1.0939 31 1 7.9438 4.1929 1.9371 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259989400.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:14 Heat of formation + Delta-G solvation = -45.755758 kcal Electronic energy + Delta-G solvation = -14299.982333 eV Core-core repulsion = 11776.133533 eV Total energy + Delta-G solvation = -2523.848801 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.21029 -37.47618 -36.16214 -32.58491 -30.96297 -28.62515 -28.24525 -26.50445 -22.81146 -22.05618 -21.93140 -18.58870 -16.65412 -16.42583 -15.81809 -15.44004 -15.13387 -14.36568 -14.19798 -14.11110 -13.01507 -12.79164 -12.72144 -12.36395 -12.08340 -11.91899 -11.50528 -11.28925 -11.06246 -10.72295 -10.63017 -10.39955 -9.85254 -9.33354 -8.94521 -8.68155 -8.44419 -8.00419 -5.98426 -3.97909 2.95633 3.12178 3.37537 3.43085 3.51401 4.27590 4.48046 4.65114 4.86283 4.97508 5.23828 5.29226 5.38113 5.41064 5.47441 5.54475 5.63953 5.68569 5.85630 5.91968 6.15305 6.21493 6.50503 7.23680 7.59643 7.93858 8.04608 8.30558 8.58480 8.74945 9.16348 9.65785 11.13712 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042839 B = 0.007191 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.459421 B = 3892.580742 C = 4304.629234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.522 3.478 3 O -0.500 6.500 4 N -0.648 5.648 5 C 0.100 3.900 6 C -0.150 4.150 7 C 0.137 3.863 8 H 0.096 0.904 9 C 0.063 3.937 10 O -0.380 6.380 11 C 0.199 3.801 12 C -0.504 4.504 13 H 0.066 0.934 14 C 0.053 3.947 15 N -0.902 5.902 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.087 0.913 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.003 0.997 30 H 0.001 0.999 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.161 -14.559 -1.509 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.311 3.689 3 O -0.372 6.372 4 N -0.387 5.387 5 C -0.023 4.023 6 C -0.188 4.188 7 C 0.034 3.966 8 H 0.114 0.886 9 C -0.015 4.015 10 O -0.299 6.299 11 C 0.125 3.875 12 C -0.542 4.542 13 H 0.084 0.916 14 C -0.147 4.147 15 N -0.543 5.543 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 H 0.106 0.894 21 H 0.109 0.891 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.919 -13.582 -1.583 18.139 hybrid contribution 0.317 0.683 -0.161 0.770 sum -11.601 -12.899 -1.744 17.436 Atomic orbital electron populations 1.21814 0.92104 1.04176 1.04154 1.20390 0.89691 0.82072 0.76745 1.90947 1.69895 1.29499 1.46908 1.49908 1.08905 1.04976 1.74933 1.22858 0.98261 0.80807 1.00376 1.23507 0.96554 0.97509 1.01194 1.22744 0.82804 0.91228 0.99795 0.88601 1.22348 0.95939 0.89204 0.94049 1.87932 1.69315 1.32691 1.40000 1.20118 0.87421 0.87398 0.92553 1.21103 1.28776 1.04349 0.99970 0.91616 1.24942 0.95940 0.98395 0.95415 1.69981 1.34661 1.33972 1.15639 0.86291 0.77879 0.81737 0.80656 1.19525 1.20888 1.20925 0.89424 0.89073 0.90912 0.90654 0.90043 0.88681 0.89187 0.94336 0.93724 0.97958 0.98129 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.18 36.00 0.37 -1.48 16 2 C 0.52 9.11 8.09 -10.98 -0.09 9.02 16 3 O -0.50 -12.08 16.52 -2.79 -0.05 -12.13 16 4 N -0.65 -9.71 3.56 -177.26 -0.63 -10.34 16 5 C 0.10 0.92 8.24 -8.50 -0.07 0.85 16 6 C -0.15 -1.45 8.04 -26.08 -0.21 -1.66 16 7 C 0.14 2.12 4.33 -72.25 -0.31 1.81 16 8 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 9 C 0.06 1.28 5.39 37.16 0.20 1.48 16 10 O -0.38 -10.25 9.46 -43.58 -0.41 -10.67 16 11 C 0.20 6.01 5.69 36.00 0.20 6.22 16 12 C -0.50 -16.16 9.43 -34.44 -0.32 -16.49 16 13 H 0.07 2.13 7.81 -52.49 -0.41 1.72 16 14 C 0.05 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -28.64 13.29 55.43 0.74 -27.90 16 16 Si 0.91 23.33 29.54 -169.99 -5.02 18.31 16 17 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.09 0.91 8.13 -51.93 -0.42 0.49 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 272.16 15.07 4.10 4.10 Total: -1.00 -38.52 272.16 -6.21 -44.73 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: -4.61 Total: -7.40 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.33 Total: 1.30 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.10 Total: -38.25 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.46 Total: -22.79 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -38.52 -6.21 -44.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989400.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.027 kcal (2) G-P(sol) polarization free energy of solvation -38.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds