Wall clock time and date at job start Thu Apr 9 2020 14:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00521 * 2 1 4 4 N 1.34784 * 119.99774 * 180.27106 * 2 1 3 5 5 C 1.47069 * 136.05474 * 359.72526 * 4 2 1 6 6 C 1.53495 * 87.98587 * 207.08488 * 5 4 2 7 7 C 1.47068 * 136.05818 * 179.35620 * 4 2 1 8 8 H 1.08999 * 113.46642 * 267.69604 * 7 4 2 9 9 C 1.52999 * 113.46486 * 38.13472 * 7 4 2 10 10 O 1.42898 * 109.47498 * 275.49407 * 9 7 4 11 11 C 1.42899 * 114.00254 * 180.02562 * 10 9 7 12 12 C 1.50693 * 109.46999 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00668 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99829 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99936 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99978 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47183 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47127 * 120.00020 * 16 14 12 19 19 H 1.48501 * 109.47176 * 239.99898 * 16 14 12 20 20 H 1.09000 * 109.47347 * 269.72909 * 1 2 3 21 21 H 1.09003 * 109.46583 * 29.72664 * 1 2 3 22 22 H 1.08996 * 109.47395 * 149.72482 * 1 2 3 23 23 H 1.08994 * 113.46798 * 321.87116 * 5 4 2 24 24 H 1.08999 * 113.46353 * 92.24602 * 5 4 2 25 25 H 1.09005 * 114.20375 * 87.51756 * 6 5 4 26 26 H 1.08998 * 114.20851 * 220.15153 * 6 5 4 27 27 H 1.09004 * 109.47358 * 35.49978 * 9 7 4 28 28 H 1.09007 * 109.46731 * 155.49393 * 9 7 4 29 29 H 1.09000 * 109.46711 * 300.00164 * 11 10 9 30 30 H 1.08994 * 109.46992 * 60.00024 * 11 10 9 31 31 H 0.97004 * 120.00019 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0055 5 6 1.8264 -2.5946 -0.0074 6 6 3.1678 -2.8731 0.6849 7 6 3.5941 -1.5741 -0.0189 8 1 3.9903 -1.7337 -1.0217 9 6 4.4933 -0.6811 0.8382 10 8 4.8899 0.4635 0.0801 11 6 5.7373 1.3672 0.7922 12 6 6.0911 2.5308 -0.0977 13 1 5.7076 2.5755 -1.1063 14 6 6.9046 3.5384 0.3758 15 7 7.3712 3.4842 1.6041 16 14 7.3438 4.9804 -0.7275 17 1 6.6960 4.8054 -2.0523 18 1 6.8666 6.2421 -0.1066 19 1 8.8174 5.0404 -0.9006 20 1 -0.3634 -0.0049 1.0276 21 1 -0.3632 0.8925 -0.5096 22 1 -0.3634 -0.8875 -0.5181 23 1 0.9611 -2.8278 0.6130 24 1 1.7556 -3.0229 -1.0072 25 1 3.1321 -2.8051 1.7722 26 1 3.6794 -3.7659 0.3255 27 1 3.9465 -0.3584 1.7243 28 1 5.3783 -1.2406 1.1413 29 1 5.2166 1.7324 1.6774 30 1 6.6480 0.8500 1.0939 31 1 7.9438 4.1929 1.9371 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989400.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:13 Heat of formation + Delta-G solvation = -75.326733 kcal Electronic energy + Delta-G solvation = -14301.264627 eV Core-core repulsion = 11776.133533 eV Total energy + Delta-G solvation = -2525.131094 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36571 -38.90655 -38.13645 -34.96915 -32.20053 -30.38530 -29.20571 -28.50990 -24.63734 -23.81997 -23.01712 -19.76929 -18.74016 -17.88110 -17.35021 -17.09198 -16.79747 -16.19577 -16.02930 -15.50601 -14.68172 -14.19113 -13.84870 -13.69841 -13.30026 -13.17410 -13.03771 -12.95427 -12.70062 -12.63224 -12.34695 -12.16886 -11.53496 -11.31360 -10.94181 -10.68976 -10.26080 -9.64721 -8.37557 -6.50045 1.32685 1.36549 1.51205 1.72168 2.00278 2.31152 2.94966 3.10396 3.50730 3.71211 4.02093 4.14660 4.29217 4.36065 4.50846 4.52571 4.63625 4.63976 4.69079 4.77755 4.92189 4.99590 5.09180 5.15932 5.35473 5.48773 5.91158 6.49151 6.77928 6.90961 7.21686 7.32220 8.75813 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042839 B = 0.007191 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.459421 B = 3892.580742 C = 4304.629234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.505 3.495 3 O -0.590 6.590 4 N -0.656 5.656 5 C 0.108 3.892 6 C -0.124 4.124 7 C 0.118 3.882 8 H 0.096 0.904 9 C 0.053 3.947 10 O -0.400 6.400 11 C 0.218 3.782 12 C -0.548 4.548 13 H 0.052 0.948 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.988 3.012 17 H -0.269 1.269 18 H -0.269 1.269 19 H -0.261 1.261 20 H 0.107 0.893 21 H 0.086 0.914 22 H 0.111 0.889 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.127 0.873 27 H 0.019 0.981 28 H 0.060 0.940 29 H -0.032 1.032 30 H -0.011 1.011 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.160 -16.185 -2.283 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.297 3.703 3 O -0.470 6.470 4 N -0.394 5.394 5 C -0.012 4.012 6 C -0.161 4.161 7 C 0.014 3.986 8 H 0.114 0.886 9 C -0.024 4.024 10 O -0.320 6.320 11 C 0.142 3.858 12 C -0.585 4.585 13 H 0.071 0.929 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.810 3.190 17 H -0.193 1.193 18 H -0.194 1.194 19 H -0.186 1.186 20 H 0.125 0.875 21 H 0.105 0.895 22 H 0.129 0.871 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.116 0.884 26 H 0.145 0.855 27 H 0.038 0.962 28 H 0.078 0.922 29 H -0.014 1.014 30 H 0.007 0.993 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.944 -15.308 -2.342 20.184 hybrid contribution 0.625 1.059 0.147 1.238 sum -12.319 -14.250 -2.195 18.964 Atomic orbital electron populations 1.21786 0.87235 1.05837 1.05866 1.21583 0.92089 0.81535 0.75085 1.90903 1.72044 1.32785 1.51245 1.50218 1.09010 1.07057 1.73083 1.23212 0.99099 0.76393 1.02537 1.23510 0.96432 0.95132 1.01070 1.23070 0.82500 0.93181 0.99848 0.88621 1.22762 0.97453 0.87858 0.94370 1.87887 1.68749 1.34380 1.40983 1.19687 0.86864 0.87866 0.91335 1.21366 1.30833 1.06402 0.99924 0.92948 1.26036 0.94809 1.01325 0.97200 1.70078 1.34425 1.35273 1.17308 0.85087 0.78612 0.77209 0.78138 1.19317 1.19418 1.18553 0.87497 0.89513 0.87068 0.87280 0.87257 0.88438 0.85514 0.96231 0.92175 1.01436 0.99305 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 10.18 71.24 0.73 -2.36 16 2 C 0.51 17.85 8.09 87.65 0.71 18.56 16 3 O -0.59 -30.45 16.52 4.94 0.08 -30.36 16 4 N -0.66 -18.90 3.56 -833.11 -2.97 -21.87 16 5 C 0.11 1.49 8.24 83.18 0.69 2.18 16 6 C -0.12 -1.96 8.04 31.02 0.25 -1.71 16 7 C 0.12 3.57 4.33 41.89 0.18 3.75 16 8 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 9 C 0.05 2.26 5.39 71.98 0.39 2.65 16 10 O -0.40 -23.00 9.46 -141.00 -1.33 -24.33 16 11 C 0.22 13.99 5.69 71.23 0.41 14.39 16 12 C -0.55 -36.80 9.43 25.60 0.24 -36.56 16 13 H 0.05 3.56 7.81 -2.91 -0.02 3.54 16 14 C 0.00 0.27 5.46 84.66 0.46 0.73 16 15 N -0.93 -60.24 13.29 21.45 0.28 -59.96 16 16 Si 0.99 48.36 29.54 68.60 2.03 50.39 16 17 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.11 1.43 7.93 -2.39 -0.02 1.41 16 23 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 1.55 8.13 -2.38 -0.02 1.53 16 26 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.06 2.30 8.14 -2.38 -0.02 2.29 16 29 H -0.03 -2.22 8.14 -2.39 -0.02 -2.24 16 30 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -91.41 272.16 3.23 -88.18 By element: Atomic # 1 Polarization: -4.78 SS G_CDS: 1.09 Total: -3.69 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 4.05 Total: 1.64 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.68 Total: -81.82 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -1.25 Total: -54.69 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -91.41 3.23 -88.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989400.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.849 kcal (2) G-P(sol) polarization free energy of solvation -91.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds