Wall clock time and date at job start Thu Apr 9 2020 14:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99592 * 2 1 4 4 O 1.20825 * 119.99802 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99924 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.29076 * 329.32302 * 5 3 2 7 7 C 1.54377 * 110.41250 * 207.13396 * 5 3 2 8 8 N 1.48561 * 104.59604 * 217.21049 * 7 5 3 9 9 C 1.46898 * 110.99806 * 159.03956 * 8 7 5 10 10 C 1.48715 * 104.28663 * 39.42256 * 8 7 5 11 11 C 1.54262 * 110.32293 * 91.44393 * 5 3 2 12 12 H 1.08998 * 110.33015 * 237.99656 * 11 5 3 13 13 C 1.50703 * 110.32327 * 0.10639 * 11 5 3 14 14 H 1.08003 * 119.99573 * 3.26039 * 13 11 5 15 15 C 1.37876 * 120.00133 * 183.26027 * 13 11 5 16 16 N 1.31519 * 119.99779 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00069 * 179.72348 * 15 13 11 18 18 H 1.48503 * 109.47382 * 180.27637 * 17 15 13 19 19 H 1.48504 * 109.47219 * 300.27193 * 17 15 13 20 20 H 1.48497 * 109.47436 * 60.27637 * 17 15 13 21 21 H 1.08997 * 109.47123 * 299.99726 * 1 2 3 22 22 H 1.08996 * 109.47206 * 60.00188 * 1 2 3 23 23 H 1.09007 * 109.46457 * 179.97438 * 1 2 3 24 24 H 1.08999 * 110.40855 * 335.99233 * 7 5 3 25 25 H 1.09006 * 110.40997 * 98.31295 * 7 5 3 26 26 H 1.09001 * 109.47372 * 60.12833 * 9 8 7 27 27 H 1.09002 * 109.46477 * 180.12417 * 9 8 7 28 28 H 1.08997 * 109.47306 * 300.12159 * 9 8 7 29 29 H 1.09005 * 110.50752 * 201.85032 * 10 8 7 30 30 H 1.09002 * 110.38931 * 79.36449 * 10 8 7 31 31 H 0.96995 * 120.00119 * 359.72303 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9896 0.4169 0.5225 7 6 4.0362 2.5892 0.6604 8 7 5.2200 3.0050 -0.1351 9 6 5.4849 4.4408 0.0265 10 6 4.8491 2.6858 -1.5394 11 6 4.1000 1.3392 -1.4453 12 1 4.7838 0.5116 -1.6337 13 6 2.9570 1.3064 -2.4271 14 1 1.9380 1.2988 -2.0693 15 6 3.2123 1.2861 -3.7818 16 7 4.4532 1.2959 -4.2174 17 14 1.7957 1.2377 -4.9985 18 1 2.3327 1.2152 -6.3829 19 1 0.9826 0.0175 -4.7633 20 1 0.9457 2.4416 -4.8169 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0278 -0.0005 24 1 3.2535 3.3455 0.6009 25 1 4.3164 2.4140 1.6991 26 1 5.6779 4.6588 1.0770 27 1 6.3551 4.7188 -0.5681 28 1 4.6183 5.0103 -0.3094 29 1 5.7419 2.5819 -2.1560 30 1 4.1943 3.4576 -1.9441 31 1 5.1888 1.3214 -3.5856 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260002797.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:18 Heat of formation + Delta-G solvation = -84.223490 kcal Electronic energy + Delta-G solvation = -15100.305900 eV Core-core repulsion = 12574.789013 eV Total energy + Delta-G solvation = -2525.516887 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.08076 -37.87166 -35.59899 -33.49089 -31.32665 -28.13114 -27.29967 -25.71502 -23.90897 -21.82831 -20.32940 -19.34225 -17.50480 -16.53827 -15.95078 -15.58549 -14.91462 -14.11178 -13.77691 -13.65488 -13.27447 -12.88439 -12.55271 -12.02081 -11.72852 -11.49186 -11.09990 -11.01425 -10.80949 -10.70841 -10.19164 -10.17154 -10.05032 -9.96717 -9.57635 -8.65862 -8.45484 -7.88945 -6.44035 -4.17911 3.07034 3.39163 3.41819 3.42549 3.60149 4.45856 4.73706 5.20419 5.37658 5.47779 5.50323 5.55419 5.62474 5.77331 5.88775 5.93303 6.02603 6.19033 6.21286 6.33064 6.60774 6.62083 6.96008 7.09103 7.21707 7.41651 7.61441 8.03463 8.28483 8.56517 8.76974 9.52258 10.94476 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.021175 B = 0.016328 C = 0.010330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.983395 B = 1714.382204 C = 2709.871567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.505 3.495 4 O -0.526 6.526 5 C -0.081 4.081 6 H 0.091 0.909 7 C 0.046 3.954 8 N -0.523 5.523 9 C 0.017 3.983 10 C 0.041 3.959 11 C 0.049 3.951 12 H 0.044 0.956 13 C -0.603 4.603 14 H 0.055 0.945 15 C 0.028 3.972 16 N -0.904 5.904 17 Si 1.063 2.937 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.288 1.288 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 0.132 7.911 8.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.350 3.650 4 O -0.415 6.415 5 C -0.101 4.101 6 H 0.109 0.891 7 C -0.082 4.082 8 N -0.247 5.247 9 C -0.132 4.132 10 C -0.086 4.086 11 C 0.030 3.970 12 H 0.062 0.938 13 C -0.641 4.641 14 H 0.073 0.927 15 C -0.178 4.178 16 N -0.540 5.540 17 Si 0.891 3.109 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.214 1.214 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.111 0.889 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.761 0.117 6.453 7.020 hybrid contribution -0.611 0.617 1.338 1.595 sum -3.372 0.735 7.791 8.521 Atomic orbital electron populations 1.23093 0.77961 1.02727 1.01878 1.86535 1.22144 1.34255 1.84487 1.23175 0.91717 0.80752 0.69374 1.90555 1.67079 1.36533 1.47366 1.21830 0.87101 0.99024 1.02108 0.89098 1.22989 0.92658 0.95658 0.96932 1.65449 1.34853 1.15683 1.08714 1.22435 1.00462 0.89183 1.01157 1.23581 0.98706 0.99323 0.86993 1.19541 0.95677 0.93631 0.88185 0.93835 1.22056 0.92010 1.56963 0.93052 0.92742 1.25738 1.01392 0.93124 0.97503 1.70814 0.98920 1.45453 1.38768 0.83614 0.74461 0.76687 0.76103 1.20533 1.21283 1.21417 0.92804 0.92170 0.88878 0.92252 0.90875 0.92193 0.91669 0.95590 0.91170 0.93706 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.56 101.05 1.07 1.67 16 2 O -0.36 -7.29 10.50 -39.27 -0.41 -7.70 16 3 C 0.50 11.22 4.42 36.00 0.16 11.38 16 4 O -0.53 -12.62 15.05 -18.75 -0.28 -12.90 16 5 C -0.08 -1.72 3.55 -90.39 -0.32 -2.05 16 6 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 7 C 0.05 0.89 5.99 -2.18 -0.01 0.88 16 8 N -0.52 -10.42 5.66 -238.09 -1.35 -11.77 16 9 C 0.02 0.28 9.53 60.06 0.57 0.85 16 10 C 0.04 0.97 5.24 -2.10 -0.01 0.95 16 11 C 0.05 1.21 2.57 -90.39 -0.23 0.98 16 12 H 0.04 1.13 7.82 -51.93 -0.41 0.72 16 13 C -0.60 -16.64 7.80 -34.44 -0.27 -16.91 16 14 H 0.05 1.55 5.24 -52.48 -0.28 1.27 16 15 C 0.03 0.78 5.36 -17.82 -0.10 0.69 16 16 N -0.90 -26.38 13.50 55.43 0.75 -25.63 16 17 Si 1.06 25.27 29.90 -169.99 -5.08 20.18 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 22 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 23 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.06 1.24 6.69 -51.93 -0.35 0.89 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.03 0.44 7.98 -51.93 -0.41 0.03 16 29 H 0.07 1.66 7.14 -51.93 -0.37 1.29 16 30 H 0.04 1.14 7.62 -51.93 -0.40 0.74 16 31 H 0.27 7.81 5.75 -40.82 -0.23 7.57 16 LS Contribution 256.17 15.07 3.86 3.86 Total: -1.00 -30.92 256.17 -5.86 -36.78 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.20 Total: -1.26 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 0.86 Total: -1.55 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.60 Total: -37.40 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.69 Total: -20.61 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.92 -5.86 -36.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002797.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.444 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds