Wall clock time and date at job start Thu Apr 9 2020 14:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45206 * 109.46819 * 2 1 4 4 C 1.34224 * 116.99972 * 180.02562 * 3 2 1 5 5 O 1.20833 * 120.00158 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00371 * 180.02562 * 4 3 2 7 7 H 1.09006 * 110.36552 * 30.26538 * 6 4 3 8 8 C 1.54376 * 110.32550 * 152.44622 * 6 4 3 9 9 N 1.48559 * 104.59243 * 142.75175 * 8 6 4 10 10 C 1.48558 * 104.22344 * 320.51541 * 9 8 6 11 11 C 1.54258 * 110.32388 * 268.08806 * 6 4 3 12 12 H 1.09001 * 110.41018 * 122.15800 * 11 6 4 13 13 C 1.50702 * 110.32519 * 359.97438 * 11 6 4 14 14 H 1.08005 * 119.99899 * 359.09850 * 13 11 6 15 15 C 1.37871 * 120.00428 * 179.09814 * 13 11 6 16 16 N 1.31518 * 119.99491 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00433 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47391 * 180.02562 * 17 15 13 19 19 H 1.48506 * 109.46625 * 299.99882 * 17 15 13 20 20 H 1.48500 * 109.47154 * 59.99950 * 17 15 13 21 21 H 1.08995 * 109.47437 * 60.00046 * 1 2 3 22 22 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47001 * 299.99471 * 1 2 3 24 24 H 1.09002 * 109.47001 * 240.00529 * 2 1 3 25 25 H 1.08995 * 109.47437 * 119.99954 * 2 1 3 26 26 H 1.08998 * 110.41048 * 23.97481 * 8 6 4 27 27 H 1.09004 * 110.51014 * 261.57534 * 8 6 4 28 28 H 1.00902 * 111.00006 * 80.07392 * 9 8 6 29 29 H 1.09004 * 110.41547 * 280.70595 * 10 9 8 30 30 H 1.08999 * 110.51301 * 158.31269 * 10 9 8 31 31 H 0.97005 * 119.99594 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.2503 3.6252 0.5158 8 6 5.3119 2.9421 0.6690 9 7 6.1053 3.9163 -0.1238 10 6 5.6900 3.6679 -1.5284 11 6 4.1693 3.4150 -1.4456 12 1 3.6210 4.3366 -1.6411 13 6 3.7627 2.3463 -2.4271 14 1 3.3763 1.4033 -2.0694 15 6 3.8838 2.5722 -3.7818 16 7 4.3539 3.7207 -4.2174 17 14 3.3791 1.2477 -4.9985 18 1 3.6064 1.7346 -6.3829 19 1 4.1900 0.0258 -4.7646 20 1 1.9402 0.9295 -4.8152 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 5.7629 1.9512 0.6151 27 1 5.2359 3.2685 1.7062 28 1 5.8957 4.8636 0.1531 29 1 6.2002 2.7906 -1.9263 30 1 5.8971 4.5406 -2.1479 31 1 4.4388 3.8798 -5.1706 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260059223.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:26 Heat of formation + Delta-G solvation = -113.061643 kcal Electronic energy + Delta-G solvation = -14943.726640 eV Core-core repulsion = 12416.959237 eV Total energy + Delta-G solvation = -2526.767403 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68367 -39.14821 -37.28659 -34.80830 -32.74771 -31.34122 -29.93523 -26.37456 -24.85822 -23.15873 -22.46894 -20.77675 -19.26148 -18.16666 -17.67618 -17.12041 -16.82782 -16.34283 -15.03807 -15.00026 -14.68086 -14.47530 -13.95039 -13.60803 -13.40675 -12.93946 -12.88613 -12.62371 -12.46836 -12.42492 -12.35563 -11.81554 -11.55075 -11.46037 -11.38806 -10.91347 -10.66387 -9.59493 -8.24466 -6.31583 1.32257 1.34475 1.40954 1.42586 1.90663 2.34966 3.08385 3.45228 3.91418 3.99853 4.05811 4.13793 4.17160 4.33728 4.42251 4.65976 4.83703 4.88124 4.92510 4.93901 5.06662 5.15385 5.42644 5.48167 5.57811 5.70068 5.78179 6.17556 6.61091 6.71669 6.96508 7.34673 8.84761 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.016294 C = 0.009907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.986454 B = 1718.009518 C = 2825.617875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 O -0.366 6.366 4 C 0.503 3.497 5 O -0.550 6.550 6 C -0.118 4.118 7 H 0.112 0.888 8 C 0.060 3.940 9 N -0.669 5.669 10 C 0.077 3.923 11 C 0.031 3.969 12 H 0.029 0.971 13 C -0.535 4.535 14 H 0.046 0.954 15 C 0.026 3.974 16 N -0.908 5.908 17 Si 0.940 3.060 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.269 1.269 21 H 0.057 0.943 22 H 0.103 0.897 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.343 0.657 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 -2.249 8.668 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.283 6.283 4 C 0.349 3.651 5 O -0.441 6.441 6 C -0.139 4.139 7 H 0.130 0.870 8 C -0.070 4.070 9 N -0.296 5.296 10 C -0.053 4.053 11 C 0.011 3.989 12 H 0.047 0.953 13 C -0.573 4.573 14 H 0.064 0.936 15 C -0.175 4.175 16 N -0.546 5.546 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.194 1.194 21 H 0.076 0.924 22 H 0.122 0.878 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.159 0.841 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.513 -2.799 8.492 10.016 hybrid contribution -1.053 -0.510 -1.223 1.692 sum -5.566 -3.309 7.270 9.735 Atomic orbital electron populations 1.21798 0.90102 1.04369 1.03563 1.23211 0.97422 0.79998 1.01697 1.86525 1.24711 1.33089 1.83964 1.23389 0.80189 0.92678 0.68885 1.90540 1.61030 1.44099 1.48410 1.22735 0.99390 0.90572 1.01230 0.87012 1.22996 0.87999 0.98308 0.97704 1.63346 1.54563 1.08098 1.03579 1.22719 0.94728 0.99481 0.88355 1.19907 0.94629 0.95972 0.88430 0.95253 1.21335 1.43687 1.00305 0.91992 0.93633 1.25531 0.94918 0.97241 0.99791 1.69995 1.45746 1.23853 1.15004 0.85885 0.79014 0.79812 0.78745 1.19933 1.20680 1.19438 0.92368 0.87816 0.90387 0.93521 0.90680 0.91317 0.87428 0.84084 0.94338 0.92269 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 10.29 71.98 0.74 -2.55 16 2 C 0.05 1.63 6.19 71.98 0.45 2.08 16 3 O -0.37 -14.59 10.13 -51.36 -0.52 -15.11 16 4 C 0.50 21.93 4.42 71.24 0.31 22.25 16 5 O -0.55 -26.46 15.07 21.94 0.33 -26.13 16 6 C -0.12 -4.78 3.56 -10.65 -0.04 -4.82 16 7 H 0.11 3.82 8.14 -2.38 -0.02 3.80 16 8 C 0.06 2.17 6.96 86.45 0.60 2.77 16 9 N -0.67 -25.16 7.62 -500.86 -3.82 -28.98 16 10 C 0.08 3.61 6.23 86.45 0.54 4.15 16 11 C 0.03 1.50 2.92 -10.64 -0.03 1.47 16 12 H 0.03 1.51 8.14 -2.39 -0.02 1.50 16 13 C -0.54 -29.70 7.82 25.60 0.20 -29.50 16 14 H 0.05 2.62 5.24 -2.91 -0.02 2.60 16 15 C 0.03 1.44 5.35 84.65 0.45 1.89 16 16 N -0.91 -51.46 12.63 21.45 0.27 -51.18 16 17 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 25 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 26 H 0.07 2.83 6.86 -2.39 -0.02 2.81 16 27 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.34 10.87 8.92 -89.69 -0.80 10.07 16 29 H 0.04 2.05 7.85 -2.39 -0.02 2.03 16 30 H 0.06 2.87 8.06 -2.39 -0.02 2.86 16 31 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -64.35 260.42 1.84 -62.51 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.32 Total: 14.57 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 3.22 Total: -2.25 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -3.55 Total: -80.16 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.19 Total: -41.25 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.35 1.84 -62.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059223.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.548 kcal (2) G-P(sol) polarization free energy of solvation -64.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds