Wall clock time and date at job start Thu Apr 9 2020 14:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00097 * 2 1 4 4 N 1.34776 * 119.99758 * 180.02562 * 2 1 3 5 5 C 1.47020 * 125.65281 * 359.95767 * 4 2 1 6 6 C 1.54316 * 107.27568 * 178.97789 * 5 4 2 7 7 C 1.55158 * 102.94139 * 337.80546 * 6 5 4 8 8 H 1.08996 * 111.03958 * 277.41298 * 7 6 5 9 9 C 1.52994 * 111.00727 * 153.57557 * 7 6 5 10 10 O 1.42905 * 109.47654 * 181.34945 * 9 7 6 11 11 C 1.34926 * 117.00173 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00019 * 0.02562 * 11 10 9 13 13 C 1.38637 * 119.99818 * 180.02562 * 11 10 9 14 14 N 1.31579 * 120.00017 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99780 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47277 * 90.00217 * 15 13 11 17 17 H 1.48502 * 109.47039 * 209.99482 * 15 13 11 18 18 H 1.48500 * 109.47684 * 330.00011 * 15 13 11 19 19 C 1.47422 * 125.64527 * 180.02562 * 4 2 1 20 20 H 1.09000 * 109.46844 * 240.00250 * 1 2 3 21 21 H 1.09004 * 109.47241 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47285 * 119.99976 * 1 2 3 23 23 H 1.09000 * 109.88493 * 59.55540 * 5 4 2 24 24 H 1.09003 * 109.87996 * 298.39630 * 5 4 2 25 25 H 1.09003 * 110.72312 * 219.44382 * 6 5 4 26 26 H 1.09003 * 110.72351 * 96.16743 * 6 5 4 27 27 H 1.09003 * 109.47405 * 301.34995 * 9 7 6 28 28 H 1.08997 * 109.47389 * 61.35244 * 9 7 6 29 29 H 0.97001 * 119.99848 * 180.02562 * 14 13 11 30 30 H 1.08998 * 110.36873 * 85.25268 * 19 4 2 31 31 H 1.09005 * 110.36491 * 322.92676 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5747 -2.5066 -0.0002 6 6 2.7280 -3.5316 -0.0273 7 6 3.9080 -2.7115 -0.6125 8 1 3.8590 -2.6772 -1.7008 9 6 5.2518 -3.2735 -0.1445 10 8 6.3125 -2.4768 -0.6758 11 6 7.5717 -2.8404 -0.3550 12 1 7.7412 -3.6999 0.2766 13 6 8.6478 -2.1107 -0.8363 14 7 9.8757 -2.4656 -0.5239 15 14 8.3544 -0.6238 -1.9282 16 1 8.2260 0.5919 -1.0851 17 1 9.4987 -0.4609 -2.8606 18 1 7.1054 -0.8202 -2.7071 19 6 3.6479 -1.3123 -0.0001 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3634 1.0277 0.0005 22 1 -0.3634 -0.5138 -0.8900 23 1 0.9481 -2.6302 -0.8835 24 1 0.9783 -2.6434 0.9019 25 1 2.4824 -4.3715 -0.6773 26 1 2.9606 -3.8772 0.9799 27 1 5.2940 -3.2550 0.9445 28 1 5.3581 -4.3002 -0.4948 29 1 10.6286 -1.9548 -0.8603 30 1 4.0334 -1.2662 1.0184 31 1 4.1059 -0.5378 -0.6154 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260111860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:31 Heat of formation + Delta-G solvation = -74.789198 kcal Electronic energy + Delta-G solvation = -14256.849366 eV Core-core repulsion = 11731.741581 eV Total energy + Delta-G solvation = -2525.107785 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.92412 -37.68516 -36.16271 -32.57517 -31.64002 -29.84122 -29.10133 -25.59657 -23.87067 -22.55818 -20.19220 -19.26307 -17.53910 -16.91666 -16.44544 -15.41954 -15.35448 -14.59989 -14.05627 -13.77457 -13.16947 -13.08181 -12.72209 -12.54535 -12.45460 -12.17125 -11.99787 -11.64842 -11.04887 -10.90431 -10.70836 -10.52399 -9.95948 -9.80955 -9.56445 -9.27793 -8.58914 -8.16122 -5.98783 -3.66834 2.67065 3.06035 3.45011 3.49737 3.65065 4.41027 4.57992 4.58875 4.74109 4.90426 5.10616 5.16437 5.25126 5.35659 5.36925 5.54342 5.64072 5.70558 5.79388 5.94909 6.01001 6.18442 6.33768 6.40858 6.41785 6.60659 7.58234 7.91490 8.20448 8.37024 9.41323 9.95266 11.13854 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039965 B = 0.007740 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.446067 B = 3616.743610 C = 4164.951635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.520 3.480 3 O -0.547 6.547 4 N -0.622 5.622 5 C 0.103 3.897 6 C -0.126 4.126 7 C -0.097 4.097 8 H 0.088 0.912 9 C 0.095 3.905 10 O -0.333 6.333 11 C -0.358 4.358 12 H 0.079 0.921 13 C 0.045 3.955 14 N -0.913 5.913 15 Si 0.905 3.095 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.265 1.265 19 C 0.114 3.886 20 H 0.085 0.915 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.269 0.731 30 H 0.071 0.929 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.675 -1.578 0.781 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.309 3.691 3 O -0.425 6.425 4 N -0.357 5.357 5 C -0.020 4.020 6 C -0.164 4.164 7 C -0.117 4.117 8 H 0.106 0.894 9 C 0.017 3.983 10 O -0.249 6.249 11 C -0.436 4.436 12 H 0.096 0.904 13 C -0.152 4.152 14 N -0.559 5.559 15 Si 0.733 3.267 16 H -0.206 1.206 17 H -0.217 1.217 18 H -0.189 1.189 19 C -0.008 4.008 20 H 0.104 0.896 21 H 0.108 0.892 22 H 0.104 0.896 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.302 -0.726 0.636 19.326 hybrid contribution 0.026 0.329 -0.302 0.448 sum -19.277 -0.396 0.334 19.284 Atomic orbital electron populations 1.21886 0.91754 1.05137 1.03937 1.20459 0.90259 0.82226 0.76117 1.90742 1.70863 1.30687 1.50191 1.48682 1.08269 1.05629 1.73126 1.22024 0.96414 0.82165 1.01381 1.22641 0.93908 0.97320 1.02499 1.22366 0.94215 0.93933 1.01145 0.89362 1.21920 0.85983 0.93909 0.96461 1.85221 1.13641 1.53191 1.72807 1.20343 0.79848 1.13245 1.30176 0.90362 1.24304 0.93808 0.98742 0.98351 1.69686 0.97500 1.41283 1.47397 0.86187 0.77586 0.82481 0.80495 1.20633 1.21740 1.18935 1.22303 0.78770 0.98073 1.01660 0.89645 0.89160 0.89620 0.91412 0.91409 0.89736 0.90170 0.94883 0.94598 0.92107 0.91029 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.51 36.01 0.34 -1.16 16 2 C 0.52 7.63 7.96 -10.98 -0.09 7.55 16 3 O -0.55 -10.76 17.34 5.56 0.10 -10.67 16 4 N -0.62 -8.72 3.33 -170.51 -0.57 -9.29 16 5 C 0.10 1.01 6.49 -3.07 -0.02 0.99 16 6 C -0.13 -1.35 6.42 -24.90 -0.16 -1.51 16 7 C -0.10 -1.52 3.33 -88.46 -0.29 -1.82 16 8 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 9 C 0.10 1.88 5.46 37.15 0.20 2.08 16 10 O -0.33 -8.67 8.46 -16.50 -0.14 -8.81 16 11 C -0.36 -10.58 10.35 30.88 0.32 -10.26 16 12 H 0.08 2.39 8.00 -52.49 -0.42 1.97 16 13 C 0.05 1.36 5.49 -17.51 -0.10 1.27 16 14 N -0.91 -28.62 13.96 55.48 0.77 -27.84 16 15 Si 0.90 23.82 28.61 -169.99 -4.86 18.96 16 16 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 17 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 18 H -0.26 -6.94 7.11 56.52 0.40 -6.54 16 19 C 0.11 1.94 6.24 -2.52 -0.02 1.92 16 20 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 22 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 27 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.27 7.90 8.31 -40.82 -0.34 7.56 16 30 H 0.07 1.26 8.00 -51.93 -0.42 0.84 16 31 H 0.08 1.66 8.04 -51.93 -0.42 1.24 16 LS Contribution 267.88 15.07 4.04 4.04 Total: -1.00 -35.27 267.88 -5.08 -40.35 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -4.61 Total: -5.78 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 0.19 Total: -0.95 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.21 Total: -37.13 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.04 Total: -19.48 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.86 Total: 18.96 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -35.27 -5.08 -40.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.442 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds