Wall clock time and date at job start Thu Apr 9 2020 14:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00097 * 2 1 4 4 N 1.34776 * 119.99758 * 180.02562 * 2 1 3 5 5 C 1.47020 * 125.65281 * 359.95767 * 4 2 1 6 6 C 1.54316 * 107.27568 * 178.97789 * 5 4 2 7 7 C 1.55158 * 102.94139 * 337.80546 * 6 5 4 8 8 H 1.08996 * 111.03958 * 277.41298 * 7 6 5 9 9 C 1.52994 * 111.00727 * 153.57557 * 7 6 5 10 10 O 1.42905 * 109.47654 * 181.34945 * 9 7 6 11 11 C 1.34926 * 117.00173 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00019 * 0.02562 * 11 10 9 13 13 C 1.38637 * 119.99818 * 180.02562 * 11 10 9 14 14 N 1.31579 * 120.00017 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99780 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47277 * 90.00217 * 15 13 11 17 17 H 1.48502 * 109.47039 * 209.99482 * 15 13 11 18 18 H 1.48500 * 109.47684 * 330.00011 * 15 13 11 19 19 C 1.47422 * 125.64527 * 180.02562 * 4 2 1 20 20 H 1.09000 * 109.46844 * 240.00250 * 1 2 3 21 21 H 1.09004 * 109.47241 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47285 * 119.99976 * 1 2 3 23 23 H 1.09000 * 109.88493 * 59.55540 * 5 4 2 24 24 H 1.09003 * 109.87996 * 298.39630 * 5 4 2 25 25 H 1.09003 * 110.72312 * 219.44382 * 6 5 4 26 26 H 1.09003 * 110.72351 * 96.16743 * 6 5 4 27 27 H 1.09003 * 109.47405 * 301.34995 * 9 7 6 28 28 H 1.08997 * 109.47389 * 61.35244 * 9 7 6 29 29 H 0.97001 * 119.99848 * 180.02562 * 14 13 11 30 30 H 1.08998 * 110.36873 * 85.25268 * 19 4 2 31 31 H 1.09005 * 110.36491 * 322.92676 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5747 -2.5066 -0.0002 6 6 2.7280 -3.5316 -0.0273 7 6 3.9080 -2.7115 -0.6125 8 1 3.8590 -2.6772 -1.7008 9 6 5.2518 -3.2735 -0.1445 10 8 6.3125 -2.4768 -0.6758 11 6 7.5717 -2.8404 -0.3550 12 1 7.7412 -3.6999 0.2766 13 6 8.6478 -2.1107 -0.8363 14 7 9.8757 -2.4656 -0.5239 15 14 8.3544 -0.6238 -1.9282 16 1 8.2260 0.5919 -1.0851 17 1 9.4987 -0.4609 -2.8606 18 1 7.1054 -0.8202 -2.7071 19 6 3.6479 -1.3123 -0.0001 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3634 1.0277 0.0005 22 1 -0.3634 -0.5138 -0.8900 23 1 0.9481 -2.6302 -0.8835 24 1 0.9783 -2.6434 0.9019 25 1 2.4824 -4.3715 -0.6773 26 1 2.9606 -3.8772 0.9799 27 1 5.2940 -3.2550 0.9445 28 1 5.3581 -4.3002 -0.4948 29 1 10.6286 -1.9548 -0.8603 30 1 4.0334 -1.2662 1.0184 31 1 4.1059 -0.5378 -0.6154 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260111860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:31 Heat of formation + Delta-G solvation = -100.651977 kcal Electronic energy + Delta-G solvation = -14257.970860 eV Core-core repulsion = 11731.741581 eV Total energy + Delta-G solvation = -2526.229279 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.06038 -39.10852 -37.89530 -34.33348 -33.40461 -30.73871 -30.22393 -27.28466 -25.66163 -23.73739 -21.49792 -20.36454 -19.66828 -18.03848 -17.84002 -17.21665 -16.53481 -15.93966 -15.77940 -15.18637 -14.77202 -14.39380 -14.08082 -13.85847 -13.77162 -13.30121 -13.08697 -12.99955 -12.86401 -12.30869 -12.16774 -11.93274 -11.75274 -11.43886 -11.39730 -10.99844 -10.39511 -9.71079 -8.30949 -6.00049 1.33560 1.36975 1.54787 1.58805 2.01379 2.39248 3.02304 3.16815 3.59625 3.63663 3.87128 4.11317 4.29273 4.40441 4.46385 4.50673 4.62106 4.65157 4.77519 4.78282 4.85324 4.98908 5.04575 5.13650 5.22950 5.34784 5.56609 6.11373 6.54938 7.09078 7.11421 7.79915 8.85023 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039965 B = 0.007740 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.446067 B = 3616.743610 C = 4164.951635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.507 3.493 3 O -0.613 6.613 4 N -0.622 5.622 5 C 0.101 3.899 6 C -0.114 4.114 7 C -0.091 4.091 8 H 0.084 0.916 9 C 0.086 3.914 10 O -0.352 6.352 11 C -0.355 4.355 12 H 0.055 0.945 13 C -0.010 4.010 14 N -0.951 5.951 15 Si 0.967 3.033 16 H -0.281 1.281 17 H -0.276 1.276 18 H -0.266 1.266 19 C 0.111 3.889 20 H 0.116 0.884 21 H 0.089 0.911 22 H 0.114 0.886 23 H 0.098 0.902 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.274 0.726 30 H 0.057 0.943 31 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.705 -2.378 0.341 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.299 3.701 3 O -0.495 6.495 4 N -0.356 5.356 5 C -0.020 4.020 6 C -0.151 4.151 7 C -0.111 4.111 8 H 0.103 0.897 9 C 0.009 3.991 10 O -0.269 6.269 11 C -0.434 4.434 12 H 0.073 0.927 13 C -0.204 4.204 14 N -0.598 5.598 15 Si 0.792 3.208 16 H -0.207 1.207 17 H -0.201 1.201 18 H -0.190 1.190 19 C -0.012 4.012 20 H 0.134 0.866 21 H 0.108 0.892 22 H 0.133 0.867 23 H 0.117 0.883 24 H 0.119 0.881 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -22.376 -1.580 0.200 22.432 hybrid contribution 0.922 0.484 -0.092 1.046 sum -21.454 -1.095 0.108 21.482 Atomic orbital electron populations 1.21899 0.86563 1.06114 1.06655 1.21657 0.92608 0.81257 0.74545 1.90709 1.72573 1.33050 1.53202 1.48825 1.06814 1.07572 1.72348 1.22372 0.96169 0.78953 1.04540 1.22698 0.91503 0.97796 1.03147 1.22287 0.93762 0.94038 1.00974 0.89712 1.22295 0.86014 0.94143 0.96654 1.85173 1.13315 1.54907 1.73497 1.20362 0.81625 1.12207 1.29164 0.92722 1.25103 0.93708 1.01576 0.99987 1.69776 0.98362 1.42798 1.48886 0.85247 0.77740 0.78927 0.78913 1.20651 1.20088 1.19007 1.22066 0.81320 0.97761 1.00052 0.86612 0.89247 0.86745 0.88336 0.88097 0.86765 0.89449 0.94675 0.93519 0.91675 0.92456 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.51 71.24 0.68 -1.48 16 2 C 0.51 14.21 7.96 87.66 0.70 14.90 16 3 O -0.61 -24.71 17.34 -3.03 -0.05 -24.76 16 4 N -0.62 -16.26 3.33 -811.76 -2.70 -18.96 16 5 C 0.10 1.49 6.49 86.73 0.56 2.05 16 6 C -0.11 -2.00 6.42 31.78 0.20 -1.80 16 7 C -0.09 -2.74 3.33 -9.39 -0.03 -2.78 16 8 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 9 C 0.09 3.37 5.46 71.98 0.39 3.76 16 10 O -0.35 -18.65 8.46 -81.96 -0.69 -19.34 16 11 C -0.36 -21.45 10.35 67.92 0.70 -20.74 16 12 H 0.05 3.46 8.00 -2.91 -0.02 3.44 16 13 C -0.01 -0.63 5.49 84.83 0.47 -0.17 16 14 N -0.95 -60.56 13.96 21.61 0.30 -60.26 16 15 Si 0.97 49.87 28.61 68.60 1.96 51.83 16 16 H -0.28 -14.36 7.11 99.48 0.71 -13.66 16 17 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 18 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 19 C 0.11 3.83 6.24 86.87 0.54 4.37 16 20 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.09 1.32 8.12 -2.38 -0.02 1.30 16 22 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 26 H 0.09 1.45 8.04 -2.39 -0.02 1.43 16 27 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 30 H 0.06 2.08 8.00 -2.39 -0.02 2.06 16 31 H 0.04 1.74 8.04 -2.38 -0.02 1.72 16 Total: -1.00 -80.43 267.88 4.13 -76.31 By element: Atomic # 1 Polarization: -4.03 SS G_CDS: 1.09 Total: -2.93 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 4.21 Total: -1.88 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.40 Total: -79.22 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.75 Total: -44.10 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 1.96 Total: 51.83 kcal Total: -80.43 4.13 -76.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.347 kcal (2) G-P(sol) polarization free energy of solvation -80.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds