Wall clock time and date at job start Thu Apr 9 2020 14:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99990 * 2 1 4 4 N 1.34777 * 120.00100 * 180.02562 * 2 1 3 5 5 C 1.47426 * 125.64500 * 359.95253 * 4 2 1 6 6 C 1.54914 * 104.82992 * 204.16642 * 5 4 2 7 7 C 1.55405 * 101.66697 * 323.07703 * 6 5 4 8 8 H 1.09000 * 110.69068 * 277.04987 * 7 6 5 9 9 O 1.42893 * 110.84950 * 153.69922 * 7 6 5 10 10 C 1.42908 * 113.99673 * 155.08534 * 9 7 6 11 11 C 1.50702 * 109.46874 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00064 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99736 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00002 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99984 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47264 * 90.00218 * 15 13 11 17 17 H 1.48507 * 109.47030 * 210.00354 * 15 13 11 18 18 H 1.48503 * 109.47275 * 330.00278 * 15 13 11 19 19 C 1.47018 * 125.64981 * 179.97438 * 4 2 1 20 20 H 1.08997 * 109.46710 * 270.00359 * 1 2 3 21 21 H 1.09002 * 109.47002 * 30.00109 * 1 2 3 22 22 H 1.08993 * 109.47053 * 149.99894 * 1 2 3 23 23 H 1.08999 * 110.36956 * 323.01018 * 5 4 2 24 24 H 1.09001 * 110.36709 * 85.22211 * 5 4 2 25 25 H 1.09000 * 111.00339 * 81.07133 * 6 5 4 26 26 H 1.09001 * 111.00161 * 204.91727 * 6 5 4 27 27 H 1.08994 * 109.47041 * 299.99697 * 10 9 7 28 28 H 1.08997 * 109.46714 * 59.99917 * 10 9 7 29 29 H 0.97001 * 120.00021 * 179.97438 * 14 13 11 30 30 H 1.09002 * 109.88241 * 298.32048 * 19 4 2 31 31 H 1.09000 * 109.88049 * 59.33177 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5730 -2.5103 -0.0001 6 6 2.6546 -3.4349 0.6121 7 6 3.9584 -2.8225 0.0289 8 1 4.1434 -3.1977 -0.9776 9 8 5.0724 -3.0905 0.8827 10 6 6.3341 -3.0828 0.2116 11 6 7.4316 -3.3758 1.2020 12 1 7.1899 -3.5500 2.2401 13 6 8.7444 -3.4204 0.7829 14 7 9.7022 -3.6756 1.6472 15 14 9.1625 -3.1184 -1.0125 16 1 9.4031 -1.6688 -1.2277 17 1 10.3848 -3.8817 -1.3712 18 1 8.0320 -3.5645 -1.8659 19 6 3.6440 -1.3119 -0.0011 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8899 -0.5138 23 1 0.6734 -2.5194 0.6153 24 1 1.3383 -2.8207 -1.0183 25 1 2.6497 -3.3746 1.7005 26 1 2.5227 -4.4644 0.2789 27 1 6.3357 -3.8447 -0.5678 28 1 6.5009 -2.1036 -0.2371 29 1 10.6257 -3.7073 1.3523 30 1 4.0604 -0.8643 -0.9035 31 1 4.0646 -0.8283 0.8805 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260240658.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:34 Heat of formation + Delta-G solvation = -81.649526 kcal Electronic energy + Delta-G solvation = -14154.897527 eV Core-core repulsion = 11629.492256 eV Total energy + Delta-G solvation = -2525.405271 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.96548 -37.88394 -35.88010 -32.71403 -31.38085 -29.88345 -28.48562 -27.30542 -23.44800 -21.91134 -20.91083 -19.32666 -17.21361 -16.81335 -16.67715 -15.40760 -15.38462 -14.50075 -14.38917 -13.85812 -13.43369 -13.05056 -12.71870 -12.66664 -12.47093 -12.08844 -12.03685 -11.84224 -11.41340 -10.95704 -10.75508 -10.39403 -9.93719 -9.88236 -9.26402 -8.99330 -8.65912 -8.54216 -6.15901 -4.15901 2.61300 2.96083 3.22564 3.29489 3.29751 4.31377 4.36533 4.50052 4.57437 4.89703 5.08678 5.11474 5.16020 5.21921 5.25803 5.41054 5.60352 5.63704 5.87347 5.91605 6.09346 6.19495 6.29031 6.52718 6.90969 7.50410 7.52330 7.90324 8.14438 8.57314 8.94524 9.42484 10.96993 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049849 B = 0.006502 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.558983 B = 4305.215008 C = 4518.988299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.522 3.478 3 O -0.548 6.548 4 N -0.616 5.616 5 C 0.101 3.899 6 C -0.129 4.129 7 C 0.076 3.924 8 H 0.071 0.929 9 O -0.362 6.362 10 C 0.166 3.834 11 C -0.522 4.522 12 H 0.083 0.917 13 C 0.074 3.926 14 N -0.893 5.893 15 Si 0.875 3.125 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.081 3.919 20 H 0.093 0.907 21 H 0.091 0.909 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.006 0.994 28 H 0.001 0.999 29 H 0.267 0.733 30 H 0.067 0.933 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.277 1.170 -5.907 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.311 3.689 3 O -0.426 6.426 4 N -0.352 5.352 5 C -0.022 4.022 6 C -0.167 4.167 7 C 0.016 3.984 8 H 0.088 0.912 9 O -0.280 6.280 10 C 0.091 3.909 11 C -0.560 4.560 12 H 0.101 0.899 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.701 3.299 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.042 4.042 20 H 0.111 0.889 21 H 0.110 0.890 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.789 1.745 -5.685 18.757 hybrid contribution 0.443 0.157 -1.210 1.298 sum -17.346 1.902 -6.895 18.763 Atomic orbital electron populations 1.21867 0.91539 1.04644 1.04662 1.20502 0.90291 0.82109 0.76004 1.90733 1.70812 1.30742 1.50336 1.48505 1.07670 1.05892 1.73138 1.22369 0.97026 0.81851 1.00975 1.22902 0.92606 0.98825 1.02385 1.22948 0.88679 0.91844 0.94977 0.91151 1.88001 1.14492 1.90856 1.34682 1.20724 0.81274 0.94724 0.94137 1.20857 0.89078 1.49035 0.97040 0.89876 1.24754 0.95838 0.94571 0.97643 1.69869 1.00262 1.48711 1.34294 0.86869 0.78504 0.78998 0.85491 1.19815 1.20680 1.19106 1.22595 0.79917 0.98631 1.03057 0.88886 0.88990 0.90254 0.90206 0.91099 0.89371 0.89303 0.97608 0.98123 0.92266 0.91500 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.67 36.01 0.35 -1.08 16 2 C 0.52 7.40 7.96 -10.98 -0.09 7.31 16 3 O -0.55 -10.40 17.43 5.56 0.10 -10.30 16 4 N -0.62 -8.51 3.33 -170.52 -0.57 -9.07 16 5 C 0.10 0.99 6.27 -2.53 -0.02 0.98 16 6 C -0.13 -1.59 6.82 -24.44 -0.17 -1.76 16 7 C 0.08 1.25 3.41 -24.76 -0.08 1.17 16 8 H 0.07 1.09 7.89 -51.93 -0.41 0.68 16 9 O -0.36 -8.08 10.06 -35.23 -0.35 -8.43 16 10 C 0.17 4.12 4.63 36.01 0.17 4.29 16 11 C -0.52 -15.35 9.99 -34.44 -0.34 -15.69 16 12 H 0.08 2.67 8.06 -52.49 -0.42 2.25 16 13 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.89 -27.42 13.96 55.43 0.77 -26.64 16 15 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 19 C 0.08 1.35 6.64 -3.07 -0.02 1.33 16 20 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.08 0.49 7.18 -51.93 -0.37 0.11 16 23 H 0.08 0.58 7.55 -51.93 -0.39 0.19 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.01 0.15 7.17 -51.93 -0.37 -0.22 16 28 H 0.00 0.03 7.57 -51.93 -0.39 -0.37 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.56 8.05 -51.93 -0.42 1.14 16 LS Contribution 264.47 15.07 3.99 3.99 Total: -1.00 -34.25 264.47 -5.52 -39.77 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -4.48 Total: -4.49 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.30 Total: -1.38 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.21 Total: -35.72 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.26 Total: -18.73 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.25 -5.52 -39.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260240658.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.878 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds