Wall clock time and date at job start Thu Apr 9 2020 14:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99985 * 2 1 4 4 N 1.34777 * 120.00161 * 180.02562 * 2 1 3 5 5 C 1.47429 * 125.64683 * 0.02562 * 4 2 1 6 6 C 1.54905 * 104.83158 * 155.83988 * 5 4 2 7 7 C 1.55155 * 101.58269 * 37.00809 * 6 5 4 8 8 C 1.47014 * 125.64925 * 179.71903 * 4 2 1 9 9 H 1.09006 * 109.88145 * 300.50482 * 8 4 2 10 10 C 1.52998 * 109.88728 * 61.67606 * 8 4 2 11 11 O 1.42901 * 109.46775 * 293.54752 * 10 8 4 12 12 C 1.34925 * 116.99816 * 179.97438 * 11 10 8 13 13 H 1.07992 * 120.00361 * 359.97438 * 12 11 10 14 14 C 1.38643 * 119.99951 * 180.02562 * 12 11 10 15 15 N 1.31577 * 120.00022 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99772 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46971 * 90.00554 * 16 14 12 18 18 H 1.48496 * 109.46948 * 210.00387 * 16 14 12 19 19 H 1.48503 * 109.47326 * 330.00156 * 16 14 12 20 20 H 1.09002 * 109.47152 * 239.99552 * 1 2 3 21 21 H 1.09001 * 109.46980 * 119.99652 * 1 2 3 22 22 H 1.09004 * 109.47113 * 359.97438 * 1 2 3 23 23 H 1.09004 * 110.36923 * 274.67953 * 5 4 2 24 24 H 1.08999 * 110.36390 * 36.99658 * 5 4 2 25 25 H 1.08999 * 111.00687 * 155.08799 * 6 5 4 26 26 H 1.09008 * 111.00299 * 278.89427 * 6 5 4 27 27 H 1.09000 * 110.71639 * 82.86520 * 7 6 5 28 28 H 1.09001 * 110.71817 * 205.95609 * 7 6 5 29 29 H 1.08999 * 109.47190 * 53.54485 * 10 8 4 30 30 H 1.08996 * 109.47158 * 173.55069 * 10 8 4 31 31 H 0.96999 * 119.99800 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5730 -2.5103 -0.0017 6 6 2.6545 -3.4345 -0.6147 7 6 3.9549 -2.8232 -0.0295 8 6 3.6439 -1.3119 -0.0064 9 1 4.0603 -0.8323 -0.8924 10 6 4.2344 -0.6812 1.2563 11 8 4.0282 0.7324 1.2237 12 6 4.4928 1.4435 2.2721 13 1 4.9939 0.9408 3.0860 14 6 4.3260 2.8195 2.3050 15 7 4.7786 3.5128 3.3275 16 14 3.4586 3.6890 0.8974 17 1 2.0021 3.7551 1.1789 18 1 3.9988 5.0651 0.7578 19 1 3.6856 2.9379 -0.3634 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3633 -0.5138 -0.8900 22 1 -0.3633 1.0277 0.0005 23 1 1.3403 -2.8223 1.0165 24 1 0.6734 -2.5189 -0.6169 25 1 2.5227 -4.4642 -0.2823 26 1 2.6489 -3.3739 -1.7031 27 1 4.1382 -3.1984 0.9773 28 1 4.8054 -3.0325 -0.6783 29 1 3.7438 -1.0998 2.1350 30 1 5.3029 -0.8916 1.3019 31 1 4.6622 4.4755 3.3503 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260273204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:36 Heat of formation + Delta-G solvation = -89.033764 kcal Electronic energy + Delta-G solvation = -15032.934796 eV Core-core repulsion = 12507.209320 eV Total energy + Delta-G solvation = -2525.725476 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96570 -38.53252 -37.81615 -34.14980 -32.95141 -31.43923 -29.85638 -27.13266 -25.36578 -23.45019 -21.99373 -19.98595 -19.55175 -17.91202 -17.64012 -17.29851 -16.09839 -15.73906 -15.49347 -15.24252 -14.61676 -14.26765 -14.06445 -13.69866 -13.44876 -13.28619 -13.07820 -12.93671 -12.64796 -12.07969 -12.01539 -11.81211 -11.60220 -11.48147 -11.40624 -10.54465 -10.32691 -9.44766 -8.29053 -5.94638 1.31703 1.43399 1.72373 1.94319 2.23672 2.53799 3.05082 3.32759 3.64244 3.83529 4.04638 4.22308 4.27548 4.34753 4.50097 4.56829 4.63814 4.65924 4.75112 4.89221 4.96896 5.04292 5.11190 5.16452 5.38748 5.50150 5.61404 6.14424 6.78763 7.14310 7.54168 7.93086 8.86593 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038131 B = 0.011598 C = 0.009612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.132933 B = 2413.565068 C = 2912.337649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.488 3.512 3 O -0.553 6.553 4 N -0.624 5.624 5 C 0.092 3.908 6 C -0.117 4.117 7 C -0.116 4.116 8 C 0.138 3.862 9 H 0.054 0.946 10 C 0.061 3.939 11 O -0.312 6.312 12 C -0.351 4.351 13 H 0.044 0.956 14 C -0.010 4.010 15 N -0.957 5.957 16 Si 0.995 3.005 17 H -0.289 1.289 18 H -0.296 1.296 19 H -0.269 1.269 20 H 0.101 0.899 21 H 0.117 0.883 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.022 0.978 30 H 0.035 0.965 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 -17.926 -10.210 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.278 3.722 3 O -0.430 6.430 4 N -0.360 5.360 5 C -0.029 4.029 6 C -0.155 4.155 7 C -0.154 4.154 8 C 0.034 3.966 9 H 0.072 0.928 10 C -0.017 4.017 11 O -0.228 6.228 12 C -0.430 4.430 13 H 0.062 0.938 14 C -0.203 4.203 15 N -0.605 5.605 16 Si 0.824 3.176 17 H -0.216 1.216 18 H -0.224 1.224 19 H -0.194 1.194 20 H 0.120 0.880 21 H 0.136 0.864 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.120 0.880 25 H 0.134 0.866 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.360 -17.077 -10.330 22.044 hybrid contribution 0.229 0.782 0.312 0.873 sum -9.131 -16.295 -10.018 21.195 Atomic orbital electron populations 1.21855 0.88479 1.05046 1.05931 1.21510 0.91958 0.82537 0.76196 1.90809 1.71357 1.32193 1.48633 1.48742 1.06285 1.06966 1.74002 1.22631 0.98069 0.80200 1.01995 1.22790 0.91742 0.99790 1.01169 1.22615 1.00330 0.89082 1.03348 1.21640 0.81794 0.97791 0.95411 0.92826 1.22839 0.97899 0.83521 0.97411 1.85634 1.79083 1.16214 1.41831 1.20446 1.33649 0.90916 0.98023 0.93808 1.25035 0.99025 0.96272 0.99948 1.69806 1.50890 1.07571 1.32257 0.84772 0.77461 0.74744 0.80584 1.21554 1.22368 1.19438 0.88005 0.86443 0.90648 0.90908 0.87958 0.86638 0.89718 0.89867 0.88274 0.96035 0.94740 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.33 71.24 0.66 -3.16 16 2 C 0.49 18.58 7.70 87.66 0.68 19.25 16 3 O -0.55 -28.83 11.35 20.04 0.23 -28.60 16 4 N -0.62 -19.69 3.07 -788.07 -2.42 -22.10 16 5 C 0.09 1.65 6.69 86.85 0.58 2.23 16 6 C -0.12 -1.59 7.08 31.98 0.23 -1.36 16 7 C -0.12 -2.38 6.47 31.78 0.21 -2.17 16 8 C 0.14 4.71 3.30 45.34 0.15 4.86 16 9 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 10 C 0.06 2.78 5.44 71.98 0.39 3.17 16 11 O -0.31 -18.51 5.51 -58.87 -0.32 -18.84 16 12 C -0.35 -23.36 10.35 67.92 0.70 -22.66 16 13 H 0.04 3.05 8.00 -2.91 -0.02 3.03 16 14 C -0.01 -0.70 5.49 84.83 0.47 -0.23 16 15 N -0.96 -65.52 13.96 21.61 0.30 -65.21 16 16 Si 1.00 58.45 26.28 68.60 1.80 60.25 16 17 H -0.29 -16.85 7.11 99.48 0.71 -16.14 16 18 H -0.30 -16.34 7.11 99.48 0.71 -15.64 16 19 H -0.27 -16.36 6.68 99.48 0.66 -15.70 16 20 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 21 H 0.12 1.95 7.85 -2.39 -0.02 1.93 16 22 H 0.07 2.07 8.12 -2.38 -0.02 2.05 16 23 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.10 1.24 7.47 -2.39 -0.02 1.22 16 25 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.08 1.65 7.86 -2.39 -0.02 1.63 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.27 17.31 8.31 -92.71 -0.77 16.54 16 Total: -1.00 -89.06 255.67 4.71 -84.35 By element: Atomic # 1 Polarization: -10.82 SS G_CDS: 1.05 Total: -9.77 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 4.06 Total: -0.08 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.11 Total: -87.32 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -0.10 Total: -47.44 kcal Atomic # 14 Polarization: 58.45 SS G_CDS: 1.80 Total: 60.25 kcal Total: -89.06 4.71 -84.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260273204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.688 kcal (2) G-P(sol) polarization free energy of solvation -89.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds