Wall clock time and date at job start Thu Apr 9 2020 14:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34641 * 116.99805 * 2 1 4 4 O 1.21505 * 120.00284 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99408 * 180.02562 * 3 2 1 6 6 C 1.47059 * 136.06071 * 359.94588 * 5 3 2 7 7 C 1.53498 * 87.98500 * 152.91923 * 6 5 3 8 8 C 1.47069 * 136.05136 * 180.02562 * 5 3 2 9 9 H 1.09002 * 113.46778 * 92.30240 * 8 5 3 10 10 C 1.53001 * 113.46810 * 321.91681 * 8 5 3 11 11 H 1.09000 * 109.47138 * 320.41733 * 10 8 5 12 12 C 1.52998 * 109.47193 * 200.41364 * 10 8 5 13 13 C 1.50703 * 109.46678 * 80.41761 * 10 8 5 14 14 H 1.07993 * 120.00085 * 359.97438 * 13 10 8 15 15 C 1.37876 * 119.99745 * 180.02562 * 13 10 8 16 16 N 1.31516 * 120.00230 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99965 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46810 * 59.99960 * 17 15 13 19 19 H 1.48501 * 109.46846 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46806 * 299.99854 * 17 15 13 21 21 H 1.09011 * 109.46727 * 299.99880 * 1 2 3 22 22 H 1.09002 * 109.47498 * 59.99659 * 1 2 3 23 23 H 1.09003 * 109.47274 * 180.02562 * 1 2 3 24 24 H 1.08996 * 113.46902 * 267.69594 * 6 5 3 25 25 H 1.09002 * 113.46996 * 38.13784 * 6 5 3 26 26 H 1.09001 * 114.20563 * 272.47904 * 7 6 5 27 27 H 1.09002 * 114.20561 * 139.65794 * 7 6 5 28 28 H 1.09010 * 109.47300 * 300.00208 * 12 10 8 29 29 H 1.08997 * 109.47049 * 60.00299 * 12 10 8 30 30 H 1.09000 * 109.47000 * 180.02562 * 12 10 8 31 31 H 0.96999 * 120.00357 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.5200 0.3064 -0.0002 7 6 5.3741 1.3730 -0.6996 8 6 4.4132 2.3447 -0.0002 9 1 4.7394 2.6339 0.9989 10 6 4.0217 3.5447 -0.8650 11 1 3.5461 3.1930 -1.7805 12 6 5.2741 4.3497 -1.2175 13 6 3.0598 4.4200 -0.1034 14 1 2.7577 4.1474 0.8969 15 6 2.5647 5.5682 -0.6844 16 7 2.9322 5.8999 -1.9028 17 14 1.3719 6.6528 0.2593 18 1 2.0195 7.1323 1.5066 19 1 0.9919 7.8175 -0.5800 20 1 0.1566 5.8711 0.6014 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 4.8746 0.0531 0.9989 25 1 4.3324 -0.5725 -0.6169 26 1 5.2928 1.3685 -1.7866 27 1 6.4025 1.4269 -0.3425 28 1 5.7497 4.7014 -0.3018 29 1 5.9698 3.7166 -1.7682 30 1 4.9951 5.2048 -1.8331 31 1 2.5842 6.7078 -2.3114 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484082.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:49 Heat of formation + Delta-G solvation = -37.696103 kcal Electronic energy + Delta-G solvation = -14925.362640 eV Core-core repulsion = 12401.863332 eV Total energy + Delta-G solvation = -2523.499308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.01021 -38.38742 -35.27708 -33.69491 -30.57996 -29.26020 -26.84197 -25.05018 -24.56219 -21.96339 -20.35744 -19.04552 -17.35241 -16.29572 -16.02674 -15.69444 -14.73222 -14.15582 -13.89338 -13.26639 -12.81171 -12.75014 -12.03459 -11.80977 -11.54436 -11.39309 -11.08707 -10.88415 -10.66541 -10.48598 -10.18108 -10.15074 -9.91481 -9.50634 -9.00249 -8.66942 -8.13115 -7.99848 -5.76028 -3.75199 2.67574 3.48122 3.50677 3.58730 3.68201 4.46131 4.66370 4.90704 5.44331 5.47124 5.56313 5.57569 5.64808 5.73315 5.84229 5.97640 6.13547 6.20910 6.51974 6.69665 6.89286 6.97403 7.16849 7.33957 7.88094 8.06951 8.27991 8.48016 8.61678 9.13704 9.21526 9.85456 11.31447 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.013071 C = 0.009375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.672589 B = 2141.612839 C = 2986.072067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 O -0.386 6.386 3 C 0.658 3.342 4 O -0.523 6.523 5 N -0.626 5.626 6 C 0.102 3.898 7 C -0.155 4.155 8 C 0.169 3.831 9 H 0.081 0.919 10 C 0.040 3.960 11 H 0.031 0.969 12 C -0.134 4.134 13 C -0.471 4.471 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.903 5.903 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.278 1.278 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.026 0.974 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 -11.475 2.816 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 O -0.302 6.302 3 C 0.412 3.588 4 O -0.407 6.407 5 N -0.370 5.370 6 C -0.022 4.022 7 C -0.193 4.193 8 C 0.069 3.931 9 H 0.099 0.901 10 C 0.021 3.979 11 H 0.049 0.951 12 C -0.192 4.192 13 C -0.510 4.510 14 H 0.070 0.930 15 C -0.141 4.141 16 N -0.544 5.544 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.217 1.217 20 H -0.204 1.204 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.111 0.889 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.045 0.955 29 H 0.029 0.971 30 H 0.105 0.895 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.901 -11.031 2.697 11.514 hybrid contribution -1.000 0.568 0.571 1.284 sum 0.901 -10.463 3.268 10.999 Atomic orbital electron populations 1.23013 0.75686 1.02271 1.02543 1.86187 1.23118 1.32801 1.88108 1.17512 0.81804 0.81812 0.77651 1.91180 1.62649 1.33719 1.53134 1.48330 1.00043 1.12262 1.76332 1.22895 0.85047 0.94273 0.99964 1.23504 0.98018 0.96612 1.01181 1.22978 0.80673 0.90052 0.99422 0.90124 1.18884 0.94218 0.90120 0.94671 0.95125 1.21742 0.96043 1.01697 0.99702 1.20887 1.23916 1.05380 1.00773 0.93016 1.24819 0.96423 0.97936 0.94895 1.69862 1.45224 1.25503 1.13795 0.86692 0.82246 0.79627 0.79589 1.20731 1.21743 1.20387 0.92369 0.92154 0.88905 0.90626 0.91158 0.88922 0.89745 0.95455 0.97120 0.89533 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 10.56 101.05 1.07 1.95 16 2 O -0.39 -7.21 10.59 -40.33 -0.43 -7.63 16 3 C 0.66 14.79 8.86 54.06 0.48 15.27 16 4 O -0.52 -14.03 14.26 -19.28 -0.27 -14.31 16 5 N -0.63 -12.76 3.57 -183.26 -0.65 -13.42 16 6 C 0.10 1.49 8.64 -8.51 -0.07 1.42 16 7 C -0.16 -2.37 7.11 -26.21 -0.19 -2.55 16 8 C 0.17 3.47 3.38 -72.38 -0.24 3.22 16 9 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 10 C 0.04 1.02 1.95 -91.77 -0.18 0.84 16 11 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.13 -3.15 8.78 37.16 0.33 -2.82 16 13 C -0.47 -13.70 6.55 -34.44 -0.23 -13.93 16 14 H 0.05 1.56 7.44 -52.49 -0.39 1.17 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.90 -27.29 11.32 55.43 0.63 -26.66 16 17 Si 0.89 23.42 29.54 -169.99 -5.02 18.40 16 18 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 20 H -0.28 -7.52 7.11 56.52 0.40 -7.11 16 21 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.01 0.20 7.48 -51.93 -0.39 -0.19 16 30 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 262.43 15.07 3.95 3.95 Total: -1.00 -34.22 262.43 -5.38 -39.60 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: -4.45 Total: -4.97 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 0.87 Total: 5.03 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.03 Total: -40.08 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.70 Total: -21.94 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -34.22 -5.38 -39.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484082.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.909 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds