Wall clock time and date at job start Thu Apr 9 2020 14:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34641 * 116.99805 * 2 1 4 4 O 1.21505 * 120.00284 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99408 * 180.02562 * 3 2 1 6 6 C 1.47059 * 136.06071 * 359.94588 * 5 3 2 7 7 C 1.53498 * 87.98500 * 152.91923 * 6 5 3 8 8 C 1.47069 * 136.05136 * 180.02562 * 5 3 2 9 9 H 1.09002 * 113.46778 * 92.30240 * 8 5 3 10 10 C 1.53001 * 113.46810 * 321.91681 * 8 5 3 11 11 H 1.09000 * 109.47138 * 320.41733 * 10 8 5 12 12 C 1.52998 * 109.47193 * 200.41364 * 10 8 5 13 13 C 1.50703 * 109.46678 * 80.41761 * 10 8 5 14 14 H 1.07993 * 120.00085 * 359.97438 * 13 10 8 15 15 C 1.37876 * 119.99745 * 180.02562 * 13 10 8 16 16 N 1.31516 * 120.00230 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99965 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46810 * 59.99960 * 17 15 13 19 19 H 1.48501 * 109.46846 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46806 * 299.99854 * 17 15 13 21 21 H 1.09011 * 109.46727 * 299.99880 * 1 2 3 22 22 H 1.09002 * 109.47498 * 59.99659 * 1 2 3 23 23 H 1.09003 * 109.47274 * 180.02562 * 1 2 3 24 24 H 1.08996 * 113.46902 * 267.69594 * 6 5 3 25 25 H 1.09002 * 113.46996 * 38.13784 * 6 5 3 26 26 H 1.09001 * 114.20563 * 272.47904 * 7 6 5 27 27 H 1.09002 * 114.20561 * 139.65794 * 7 6 5 28 28 H 1.09010 * 109.47300 * 300.00208 * 12 10 8 29 29 H 1.08997 * 109.47049 * 60.00299 * 12 10 8 30 30 H 1.09000 * 109.47000 * 180.02562 * 12 10 8 31 31 H 0.96999 * 120.00357 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.5200 0.3064 -0.0002 7 6 5.3741 1.3730 -0.6996 8 6 4.4132 2.3447 -0.0002 9 1 4.7394 2.6339 0.9989 10 6 4.0217 3.5447 -0.8650 11 1 3.5461 3.1930 -1.7805 12 6 5.2741 4.3497 -1.2175 13 6 3.0598 4.4200 -0.1034 14 1 2.7577 4.1474 0.8969 15 6 2.5647 5.5682 -0.6844 16 7 2.9322 5.8999 -1.9028 17 14 1.3719 6.6528 0.2593 18 1 2.0195 7.1323 1.5066 19 1 0.9919 7.8175 -0.5800 20 1 0.1566 5.8711 0.6014 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 4.8746 0.0531 0.9989 25 1 4.3324 -0.5725 -0.6169 26 1 5.2928 1.3685 -1.7866 27 1 6.4025 1.4269 -0.3425 28 1 5.7497 4.7014 -0.3018 29 1 5.9698 3.7166 -1.7682 30 1 4.9951 5.2048 -1.8331 31 1 2.5842 6.7078 -2.3114 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484082.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:48 Heat of formation + Delta-G solvation = -62.127006 kcal Electronic energy + Delta-G solvation = -14926.422043 eV Core-core repulsion = 12401.863332 eV Total energy + Delta-G solvation = -2524.558711 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.55932 -39.89460 -36.95450 -35.75532 -32.59814 -30.79668 -28.13915 -27.05492 -26.25261 -23.38842 -22.15518 -20.62677 -18.93049 -18.19061 -17.82416 -17.31302 -16.65255 -15.67123 -15.50495 -14.74217 -14.72392 -14.22322 -13.69987 -13.43008 -13.17284 -12.94137 -12.85354 -12.75419 -12.42608 -12.23263 -12.14674 -11.93457 -11.68127 -11.22127 -10.91624 -10.68789 -10.37029 -9.58030 -8.01186 -6.05449 1.20908 1.32953 1.37863 1.45044 1.99637 2.47622 3.12625 3.28782 3.61432 4.22801 4.33754 4.37907 4.39675 4.55627 4.60748 4.63370 4.71422 4.84473 5.05466 5.07403 5.19616 5.33587 5.42305 5.48666 5.70108 5.99678 6.22148 6.43686 6.92828 6.97950 7.49025 7.56789 9.03955 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.013071 C = 0.009375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.672589 B = 2141.612839 C = 2986.072067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.379 6.379 3 C 0.649 3.351 4 O -0.584 6.584 5 N -0.639 5.639 6 C 0.109 3.891 7 C -0.132 4.132 8 C 0.154 3.846 9 H 0.088 0.912 10 C 0.040 3.960 11 H -0.015 1.015 12 C -0.122 4.122 13 C -0.476 4.476 14 H 0.032 0.968 15 C 0.007 3.993 16 N -0.925 5.925 17 Si 0.939 3.061 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.293 1.293 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.144 0.856 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.128 0.872 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -13.259 3.594 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.293 6.293 3 C 0.404 3.596 4 O -0.473 6.473 5 N -0.382 5.382 6 C -0.012 4.012 7 C -0.170 4.170 8 C 0.053 3.947 9 H 0.105 0.895 10 C 0.021 3.979 11 H 0.003 0.997 12 C -0.181 4.181 13 C -0.515 4.515 14 H 0.050 0.950 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.767 3.233 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.219 1.219 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.162 0.838 24 H 0.127 0.873 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.146 0.854 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.365 -12.856 3.482 13.738 hybrid contribution -1.476 1.044 0.329 1.838 sum 1.889 -11.813 3.811 12.555 Atomic orbital electron populations 1.23380 0.73697 1.05289 1.01742 1.86193 1.25020 1.30533 1.87585 1.17888 0.82617 0.82012 0.77096 1.91125 1.64333 1.35874 1.55996 1.48676 1.00135 1.14326 1.75056 1.23201 0.81947 0.93869 1.02150 1.23458 0.99207 0.93759 1.00568 1.23069 0.82660 0.89407 0.99529 0.89461 1.18784 0.93994 0.91933 0.93192 0.99699 1.21543 0.95899 1.00730 0.99890 1.21142 1.24371 1.05780 1.00171 0.95003 1.25502 0.98100 0.99473 0.95852 1.69985 1.46190 1.25846 1.14711 0.85905 0.79919 0.78256 0.79242 1.19205 1.20702 1.21935 0.92898 0.93386 0.83810 0.87331 0.89102 0.89555 0.85435 0.94477 0.93465 0.93093 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.51 10.56 113.37 1.20 2.71 16 2 O -0.38 -13.73 10.59 -55.50 -0.59 -14.32 16 3 C 0.65 29.33 8.86 129.79 1.15 30.48 16 4 O -0.58 -32.57 14.26 19.82 0.28 -32.29 16 5 N -0.64 -25.23 3.57 -964.11 -3.44 -28.67 16 6 C 0.11 2.76 8.64 83.18 0.72 3.48 16 7 C -0.13 -3.51 7.11 30.93 0.22 -3.29 16 8 C 0.15 6.09 3.38 41.80 0.14 6.23 16 9 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 10 C 0.04 2.05 1.95 -11.54 -0.02 2.03 16 11 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 12 C -0.12 -5.68 8.78 71.98 0.63 -5.05 16 13 C -0.48 -28.41 6.55 25.60 0.17 -28.24 16 14 H 0.03 1.98 7.44 -2.91 -0.02 1.96 16 15 C 0.01 0.41 5.30 84.65 0.45 0.86 16 16 N -0.93 -57.44 11.32 21.45 0.24 -57.19 16 17 Si 0.94 49.16 29.54 68.60 2.03 51.19 16 18 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.29 -15.90 7.11 99.48 0.71 -15.20 16 21 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 22 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 24 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.09 2.44 8.12 -2.39 -0.02 2.42 16 27 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.05 1.80 7.48 -2.39 -0.02 1.78 16 30 H 0.05 2.74 6.07 -2.39 -0.01 2.73 16 31 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -78.33 262.43 4.28 -74.05 By element: Atomic # 1 Polarization: -3.07 SS G_CDS: 1.10 Total: -1.97 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 4.65 Total: 9.21 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -3.20 Total: -85.87 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.31 Total: -46.60 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal Total: -78.33 4.28 -74.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484082.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.920 kcal (2) G-P(sol) polarization free energy of solvation -78.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds