Wall clock time and date at job start Thu Apr 9 2020 14:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46737 * 2 1 4 4 N 1.46505 * 109.47213 * 180.02562 * 3 2 1 5 5 C 1.33864 * 118.73076 * 89.99425 * 4 3 2 6 6 O 1.21283 * 118.83714 * 1.86926 * 5 4 3 7 7 C 1.50349 * 122.33276 * 181.58557 * 5 4 3 8 8 O 1.42975 * 109.80710 * 344.38598 * 7 5 4 9 9 C 1.43239 * 112.98993 * 49.59504 * 8 7 5 10 10 C 1.46076 * 118.71508 * 270.24764 * 4 3 2 11 11 H 1.09008 * 109.54531 * 41.60090 * 10 4 3 12 12 C 1.50707 * 109.18487 * 281.92108 * 10 4 3 13 13 H 1.08000 * 119.99331 * 359.59227 * 12 10 4 14 14 C 1.37871 * 120.00133 * 179.58935 * 12 10 4 15 15 N 1.31518 * 120.00436 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99941 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47248 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47091 * 120.00049 * 16 14 12 19 19 H 1.48503 * 109.47449 * 240.00223 * 16 14 12 20 20 H 1.09001 * 109.47266 * 59.99788 * 1 2 3 21 21 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47037 * 299.99595 * 1 2 3 23 23 H 1.08996 * 109.46707 * 240.00262 * 2 1 3 24 24 H 1.08996 * 109.47367 * 119.99727 * 2 1 3 25 25 H 1.08996 * 109.47753 * 59.99999 * 3 2 1 26 26 H 1.09001 * 109.47415 * 300.00121 * 3 2 1 27 27 H 1.08997 * 109.41401 * 104.48405 * 7 5 4 28 28 H 1.08998 * 109.41528 * 224.34824 * 7 5 4 29 29 H 1.09002 * 109.60405 * 51.39084 * 9 8 7 30 30 H 1.08995 * 109.60474 * 171.72021 * 9 8 7 31 31 H 0.96992 * 120.00468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1480 1.4427 -1.1747 6 8 3.4976 1.4774 -2.1978 7 6 5.6480 1.4077 -1.2700 8 8 6.2219 1.7391 -0.0031 9 6 5.6572 0.9906 1.0798 10 6 4.2074 1.4370 1.2802 11 1 3.7092 0.7518 1.9663 12 6 4.1876 2.8271 1.8620 13 1 3.7058 3.6304 1.3246 14 6 4.7845 3.0731 3.0802 15 7 5.3707 2.0946 3.7349 16 14 4.7606 4.7962 3.8010 17 1 4.0434 5.7099 2.8758 18 1 4.0646 4.7745 5.1126 19 1 6.1541 5.2741 3.9879 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6766 1.9564 -0.8900 27 1 5.9692 0.4082 -1.5629 28 1 5.9805 2.1285 -2.0170 29 1 5.6829 -0.0728 0.8418 30 1 6.2285 1.1758 1.9893 31 1 5.7910 2.2677 4.5917 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260646226.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:09:43 Heat of formation + Delta-G solvation = -103.758259 kcal Electronic energy + Delta-G solvation = -15020.940002 eV Core-core repulsion = 12494.576024 eV Total energy + Delta-G solvation = -2526.363978 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49022 -38.52510 -37.07843 -35.12956 -33.69916 -30.69679 -29.02925 -27.32485 -25.90347 -24.01726 -22.46164 -19.97478 -18.43491 -18.31908 -17.85422 -16.76466 -16.55684 -15.98551 -15.53749 -15.37484 -15.05433 -14.38700 -14.16597 -14.02318 -13.06862 -12.96896 -12.90912 -12.87923 -12.58809 -12.31902 -12.16002 -12.02641 -11.72156 -11.58491 -11.12861 -10.68559 -10.11704 -9.55211 -8.19670 -6.33527 1.40751 1.44394 1.52889 1.59219 2.14191 2.42877 3.07602 3.16539 3.59695 4.04569 4.09488 4.24769 4.35344 4.39326 4.48267 4.62983 4.67100 4.70429 4.91514 4.97979 5.12416 5.20526 5.33813 5.36972 5.58656 5.72897 6.00058 6.25636 6.56153 6.76050 7.15319 7.37621 8.83367 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.012161 C = 0.009800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.295119 B = 2301.876786 C = 2856.440944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.110 3.890 4 N -0.585 5.585 5 C 0.474 3.526 6 O -0.601 6.601 7 C 0.049 3.951 8 O -0.381 6.381 9 C 0.057 3.943 10 C 0.238 3.762 11 H 0.040 0.960 12 C -0.532 4.532 13 H 0.044 0.956 14 C 0.029 3.971 15 N -0.910 5.910 16 Si 0.957 3.043 17 H -0.278 1.278 18 H -0.275 1.275 19 H -0.279 1.279 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.134 0.866 29 H 0.042 0.958 30 H 0.120 0.880 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 -3.623 -3.501 5.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C -0.013 4.013 4 N -0.314 5.314 5 C 0.263 3.737 6 O -0.485 6.485 7 C -0.030 4.030 8 O -0.300 6.300 9 C -0.020 4.020 10 C 0.136 3.864 11 H 0.057 0.943 12 C -0.570 4.570 13 H 0.063 0.937 14 C -0.171 4.171 15 N -0.549 5.549 16 Si 0.783 3.217 17 H -0.203 1.203 18 H -0.201 1.201 19 H -0.204 1.204 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.152 0.848 29 H 0.060 0.940 30 H 0.137 0.863 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.057 -3.496 -3.775 5.985 hybrid contribution -0.108 0.724 0.556 0.920 sum -3.166 -2.772 -3.219 5.298 Atomic orbital electron populations 1.21638 0.93055 1.02747 1.02270 1.21753 0.97870 0.95680 1.01276 1.21524 0.79602 0.97993 1.02139 1.47896 1.07582 1.69049 1.06832 1.21483 0.92934 0.76081 0.83184 1.90593 1.68713 1.54228 1.34977 1.22835 0.87048 1.04587 0.88549 1.88150 1.61508 1.65172 1.15124 1.23112 0.96140 0.92250 0.90530 1.19341 0.90081 0.97031 0.79936 0.94260 1.21453 1.36581 0.94677 1.04309 0.93723 1.25474 0.94300 1.00618 0.96706 1.69817 1.36834 1.32724 1.15554 0.85517 0.77875 0.80170 0.78112 1.20290 1.20055 1.20437 0.92412 0.90994 0.92001 0.93132 0.92280 0.90670 0.91572 0.87861 0.84805 0.93998 0.86266 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.13 -4.09 6.25 30.60 0.19 -3.90 16 3 C 0.11 4.25 5.22 86.38 0.45 4.70 16 4 N -0.58 -25.46 2.43 -804.76 -1.96 -27.42 16 5 C 0.47 20.29 7.59 87.69 0.67 20.96 16 6 O -0.60 -27.56 16.36 -3.04 -0.05 -27.61 16 7 C 0.05 1.80 6.98 71.13 0.50 2.29 16 8 O -0.38 -16.54 10.72 -148.98 -1.60 -18.14 16 9 C 0.06 2.53 6.11 71.99 0.44 2.97 16 10 C 0.24 11.24 2.59 44.33 0.11 11.35 16 11 H 0.04 1.95 8.13 -2.38 -0.02 1.93 16 12 C -0.53 -27.80 8.44 25.60 0.22 -27.59 16 13 H 0.04 2.45 7.81 -2.91 -0.02 2.42 16 14 C 0.03 1.51 5.26 84.65 0.45 1.96 16 15 N -0.91 -47.32 11.31 21.45 0.24 -47.07 16 16 Si 0.96 41.87 29.54 68.60 2.03 43.89 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 20 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.07 2.94 7.89 -2.39 -0.02 2.92 16 26 H 0.07 2.62 7.23 -2.39 -0.02 2.60 16 27 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.13 4.32 8.14 -2.39 -0.02 4.30 16 29 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 30 H 0.12 5.87 5.87 -2.39 -0.01 5.86 16 31 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 Total: -1.00 -58.46 260.36 3.50 -54.96 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.10 Total: 11.41 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 3.73 Total: 9.99 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -1.72 Total: -74.50 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -1.65 Total: -45.75 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -58.46 3.50 -54.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646226.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.800 kcal (2) G-P(sol) polarization free energy of solvation -58.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds