Wall clock time and date at job start Thu Apr 9 2020 14:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47348 * 2 1 4 4 N 1.46500 * 109.47380 * 184.99194 * 3 2 1 5 5 C 1.33868 * 118.73019 * 265.03974 * 4 3 2 6 6 O 1.21286 * 118.83199 * 1.86322 * 5 4 3 7 7 C 1.50344 * 122.33348 * 181.83730 * 5 4 3 8 8 O 1.42959 * 109.81160 * 344.12586 * 7 5 4 9 9 C 1.43253 * 112.98919 * 49.59395 * 8 7 5 10 10 C 1.46092 * 118.72546 * 85.04071 * 4 3 2 11 11 H 1.09000 * 109.38214 * 281.80882 * 10 4 3 12 12 C 1.50697 * 109.41030 * 41.53615 * 10 4 3 13 13 H 1.08005 * 119.99741 * 5.91944 * 12 10 4 14 14 C 1.37879 * 120.00107 * 185.93007 * 12 10 4 15 15 N 1.31514 * 119.99743 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99910 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47000 * 89.99786 * 16 14 12 18 18 H 1.48502 * 109.46717 * 209.99602 * 16 14 12 19 19 H 1.48498 * 109.47014 * 329.99505 * 16 14 12 20 20 H 1.08999 * 109.47060 * 299.99679 * 1 2 3 21 21 H 1.08992 * 109.46979 * 60.00237 * 1 2 3 22 22 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46922 * 239.99406 * 2 1 3 24 24 H 1.09001 * 109.47229 * 120.00311 * 2 1 3 25 25 H 1.09003 * 109.47474 * 64.98640 * 3 2 1 26 26 H 1.09008 * 109.46715 * 304.99112 * 3 2 1 27 27 H 1.09002 * 109.41407 * 224.01800 * 7 5 4 28 28 H 1.09000 * 109.35810 * 104.19476 * 7 5 4 29 29 H 1.08998 * 109.59526 * 51.39449 * 9 8 7 30 30 H 1.09003 * 109.60606 * 171.87874 * 9 8 7 31 31 H 0.97003 * 119.99797 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5001 1.4442 -0.1202 5 6 4.2375 1.5125 0.9950 6 8 3.6736 1.5361 2.0685 7 6 5.7399 1.5604 0.9640 8 8 6.2110 1.1564 -0.3239 9 6 5.5521 1.8359 -1.3992 10 6 4.0951 1.3713 -1.4525 11 1 4.0561 0.3425 -1.8103 12 6 3.3218 2.2567 -2.3954 13 1 2.5327 2.8897 -2.0169 14 6 3.6214 2.2586 -3.7412 15 7 4.5824 1.4880 -4.2020 16 14 2.6623 3.3556 -4.9100 17 1 3.3335 4.6763 -5.0123 18 1 2.6092 2.7221 -6.2521 19 1 1.2818 3.5404 -4.3949 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.7515 1.9299 0.9313 26 1 1.6055 1.9814 -0.8420 27 1 6.1396 0.8882 1.7233 28 1 6.0732 2.5777 1.1690 29 1 5.5869 2.9117 -1.2276 30 1 6.0469 1.5971 -2.3406 31 1 4.7934 1.4896 -5.1488 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260646239.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:09:45 Heat of formation + Delta-G solvation = -88.045646 kcal Electronic energy + Delta-G solvation = -15006.593795 eV Core-core repulsion = 12480.911167 eV Total energy + Delta-G solvation = -2525.682628 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.80181 -36.82712 -35.53861 -33.33709 -32.05822 -29.03193 -27.45562 -25.83645 -23.96518 -22.16694 -21.07131 -18.04829 -16.81470 -16.74427 -16.21130 -14.89882 -14.51697 -14.46310 -14.06384 -13.86565 -13.60625 -12.74954 -12.56662 -12.16825 -11.66922 -11.43525 -11.23052 -11.11446 -10.88363 -10.83359 -10.64041 -10.23812 -9.93654 -9.67259 -9.58474 -8.87440 -8.43091 -7.71532 -6.34647 -4.42839 3.14652 3.21919 3.23365 3.26761 3.81714 4.18381 4.68656 4.99796 5.22614 5.53335 5.54902 5.70514 5.75930 5.84769 6.10732 6.23419 6.29141 6.30793 6.36532 6.48054 6.71085 6.81321 7.06266 7.14904 7.29571 7.41967 7.68473 8.02690 8.41897 8.59576 8.87724 9.25951 10.72463 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024415 B = 0.013385 C = 0.009569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.559604 B = 2091.336544 C = 2925.466383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.110 3.890 4 N -0.578 5.578 5 C 0.477 3.523 6 O -0.581 6.581 7 C 0.053 3.947 8 O -0.390 6.390 9 C 0.053 3.947 10 C 0.238 3.762 11 H 0.048 0.952 12 C -0.537 4.537 13 H 0.070 0.930 14 C 0.069 3.931 15 N -0.886 5.886 16 Si 0.903 3.097 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.272 1.272 20 H 0.050 0.950 21 H 0.056 0.944 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.127 0.873 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.752 -0.107 3.618 4.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C -0.013 4.013 4 N -0.307 5.307 5 C 0.264 3.736 6 O -0.463 6.463 7 C -0.027 4.027 8 O -0.309 6.309 9 C -0.023 4.023 10 C 0.136 3.864 11 H 0.066 0.934 12 C -0.575 4.575 13 H 0.088 0.912 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.730 3.270 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.196 1.196 20 H 0.069 0.931 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.131 0.869 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.777 -0.290 3.902 4.298 hybrid contribution -0.601 0.759 -0.809 1.262 sum -2.378 0.469 3.093 3.930 Atomic orbital electron populations 1.21662 0.95917 1.01082 1.01565 1.21772 0.95381 0.98104 1.01941 1.21485 0.80650 0.96568 1.02595 1.47909 1.06696 1.68626 1.07501 1.21015 0.91246 0.77070 0.84259 1.90615 1.73073 1.53366 1.29286 1.22584 0.89941 1.01863 0.88320 1.88097 1.63021 1.66049 1.13768 1.23461 0.94229 0.94897 0.89705 1.19446 0.90401 0.98709 0.77829 0.93433 1.21221 1.19436 1.24988 0.91815 0.91181 1.24949 0.95102 0.95368 0.98064 1.69870 1.29427 1.37764 1.15220 0.86399 0.80312 0.80333 0.79922 1.20375 1.20904 1.19645 0.93120 0.92525 0.93154 0.91520 0.92714 0.91311 0.89058 0.86875 0.90716 0.93888 0.85565 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.76 16 2 C -0.13 -2.41 6.25 -26.73 -0.17 -2.58 16 3 C 0.11 2.21 5.08 -4.04 -0.02 2.19 16 4 N -0.58 -12.77 2.71 -168.13 -0.46 -13.23 16 5 C 0.48 10.31 7.59 -11.56 -0.09 10.22 16 6 O -0.58 -13.52 16.31 5.55 0.09 -13.43 16 7 C 0.05 0.98 6.98 35.83 0.25 1.24 16 8 O -0.39 -8.20 10.85 -35.23 -0.38 -8.59 16 9 C 0.05 1.20 5.88 37.17 0.22 1.42 16 10 C 0.24 5.63 2.87 -69.29 -0.20 5.43 16 11 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 12 C -0.54 -13.29 7.77 -34.44 -0.27 -13.56 16 13 H 0.07 1.73 6.15 -52.48 -0.32 1.41 16 14 C 0.07 1.73 5.33 -17.82 -0.09 1.63 16 15 N -0.89 -22.88 11.86 55.43 0.66 -22.22 16 16 Si 0.90 19.53 29.54 -169.99 -5.02 14.51 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.07 1.39 7.14 -51.93 -0.37 1.01 16 26 H 0.09 1.87 5.70 -51.92 -0.30 1.57 16 27 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.04 0.95 8.06 -51.93 -0.42 0.53 16 30 H 0.13 3.02 6.82 -51.93 -0.35 2.67 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 257.59 15.07 3.88 3.88 Total: -1.00 -27.19 257.59 -5.51 -32.70 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.28 Total: 2.12 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 0.00 Total: 4.25 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.20 Total: -35.45 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.29 Total: -22.01 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.19 -5.51 -32.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646239.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.344 kcal (2) G-P(sol) polarization free energy of solvation -27.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds