Wall clock time and date at job start Thu Apr 9 2020 14:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47006 * 2 1 4 4 C 1.50692 * 109.47260 * 239.99937 * 2 1 3 5 5 H 1.08005 * 119.99922 * 239.99674 * 4 2 1 6 6 C 1.37877 * 119.99974 * 60.00006 * 4 2 1 7 7 N 1.31517 * 120.00164 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99813 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47271 * 90.00104 * 8 6 4 10 10 H 1.48501 * 109.47094 * 209.99732 * 8 6 4 11 11 H 1.48501 * 109.47199 * 329.99751 * 8 6 4 12 12 N 1.46498 * 109.47105 * 119.99528 * 2 1 3 13 13 C 1.46064 * 118.52441 * 240.00004 * 12 2 1 14 14 C 1.53126 * 109.91293 * 199.44078 * 13 12 2 15 15 H 1.09002 * 109.72078 * 71.76275 * 14 13 12 16 16 C 1.53001 * 109.68527 * 192.30573 * 14 13 12 17 17 C 1.53479 * 108.36806 * 312.02213 * 14 13 12 18 18 O 1.45436 * 108.10685 * 61.72930 * 17 14 13 19 19 C 1.33737 * 118.51925 * 60.00251 * 12 2 1 20 20 O 1.21505 * 118.45630 * 357.73562 * 19 12 2 21 21 H 1.08999 * 109.46702 * 300.00327 * 1 2 3 22 22 H 1.08998 * 109.46843 * 60.00243 * 1 2 3 23 23 H 1.08997 * 109.46903 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99605 * 180.02562 * 7 6 4 25 25 H 1.09004 * 109.39256 * 79.30954 * 13 12 2 26 26 H 1.08999 * 109.39469 * 319.57768 * 13 12 2 27 27 H 1.08998 * 109.47141 * 178.90921 * 16 14 13 28 28 H 1.09000 * 109.46877 * 298.90624 * 16 14 13 29 29 H 1.08993 * 109.47438 * 58.90789 * 16 14 13 30 30 H 1.09000 * 109.73971 * 302.07893 * 17 14 13 31 31 H 1.09003 * 109.74052 * 181.38137 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4826 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3429 -2.1617 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6295 -1.7583 -3.7121 12 7 2.0184 -0.6905 1.1962 13 6 2.8558 0.0502 2.1361 14 6 3.6381 -0.9261 3.0190 15 1 4.4180 -1.4100 2.4309 16 6 4.2698 -0.1699 4.1895 17 6 2.6623 -1.9835 3.5531 18 8 2.1092 -2.7032 2.4167 19 6 1.6773 -1.9708 1.3784 20 8 0.9424 -2.4955 0.5655 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 0.7082 1.1608 -3.4844 25 1 2.2255 0.6804 2.7636 26 1 3.5547 0.6769 1.5821 27 1 4.8094 -0.8710 4.8262 28 1 4.9620 0.5799 3.8064 29 1 3.4880 0.3201 4.7698 30 1 1.8593 -1.4971 4.1069 31 1 3.1923 -2.6775 4.2056 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261021609.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:09:56 Heat of formation + Delta-G solvation = -77.432888 kcal Electronic energy + Delta-G solvation = -15073.432053 eV Core-core repulsion = 12548.209628 eV Total energy + Delta-G solvation = -2525.222424 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.30001 -36.79156 -35.85099 -33.61243 -32.26259 -29.13641 -26.56816 -25.64365 -25.07250 -22.75868 -20.53354 -18.99486 -17.41106 -16.35955 -15.92925 -15.25911 -14.79833 -14.47503 -13.93065 -13.47774 -13.29941 -12.78496 -12.42826 -12.31539 -11.96057 -11.24860 -11.15799 -10.99119 -10.85866 -10.71925 -10.44798 -10.26558 -10.11538 -9.83347 -9.35599 -8.81724 -8.31195 -7.68816 -5.97077 -3.99841 3.36523 3.38018 3.43519 3.47247 3.74730 4.15758 4.51662 4.66713 4.72092 5.02204 5.23321 5.35081 5.39536 5.54566 5.59557 5.73705 5.93531 6.00815 6.18912 6.48520 6.90089 7.07256 7.16014 7.40535 7.76724 7.92016 8.12513 8.31045 8.80044 8.97015 9.19106 9.64108 11.08911 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040758 B = 0.009729 C = 0.009499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.809487 B = 2877.375772 C = 2946.890323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.279 3.721 3 H 0.047 0.953 4 C -0.501 4.501 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.608 5.608 13 C 0.114 3.886 14 C -0.147 4.147 15 H 0.090 0.910 16 C -0.139 4.139 17 C 0.068 3.932 18 O -0.362 6.362 19 C 0.643 3.357 20 O -0.510 6.510 21 H 0.003 0.997 22 H 0.091 0.909 23 H 0.057 0.943 24 H 0.261 0.739 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.640 0.469 12.575 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.180 3.820 3 H 0.064 0.936 4 C -0.539 4.539 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.353 5.353 13 C -0.010 4.010 14 C -0.166 4.166 15 H 0.108 0.892 16 C -0.196 4.196 17 C -0.008 4.008 18 O -0.275 6.275 19 C 0.395 3.605 20 O -0.394 6.394 21 H 0.022 0.978 22 H 0.110 0.890 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.182 0.049 12.073 13.138 hybrid contribution 0.450 -0.188 -0.718 0.869 sum 5.632 -0.139 11.355 12.676 Atomic orbital electron populations 1.22203 0.97786 1.01755 0.99891 1.18854 0.91757 0.91701 0.79732 0.93563 1.21270 1.30667 1.12016 0.89993 0.92415 1.24833 0.95218 0.95088 0.98876 1.69870 1.37189 1.23151 1.23529 0.86462 0.79210 0.79300 0.82220 1.20574 1.21352 1.20088 1.47814 1.51556 1.10009 1.25933 1.21503 0.93752 0.94175 0.91524 1.22115 0.98733 0.97439 0.98297 0.89164 1.21648 1.00850 1.00282 0.96863 1.23347 0.96066 0.94641 0.86700 1.86677 1.76151 1.37572 1.27075 1.17861 0.80388 0.81195 0.81022 1.90964 1.36746 1.70077 1.41579 0.97834 0.89036 0.92375 0.92923 0.92325 0.90104 0.92055 0.91639 0.92149 0.91338 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 8.87 37.16 0.33 -3.78 16 2 C 0.28 7.18 2.62 -69.08 -0.18 7.00 16 3 H 0.05 1.20 7.83 -51.93 -0.41 0.80 16 4 C -0.50 -14.41 7.47 -34.44 -0.26 -14.66 16 5 H 0.06 1.74 7.44 -52.48 -0.39 1.35 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.90 -25.91 11.32 55.43 0.63 -25.28 16 8 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 9 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 N -0.61 -13.36 2.79 -173.92 -0.49 -13.84 16 13 C 0.11 1.83 5.71 -4.21 -0.02 1.81 16 14 C -0.15 -1.86 3.03 -90.31 -0.27 -2.13 16 15 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.14 -1.20 9.19 37.16 0.34 -0.86 16 17 C 0.07 0.90 6.50 37.41 0.24 1.14 16 18 O -0.36 -7.17 10.50 -39.25 -0.41 -7.58 16 19 C 0.64 15.18 7.57 53.59 0.41 15.58 16 20 O -0.51 -14.31 13.71 -19.40 -0.27 -14.57 16 21 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 22 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 23 H 0.06 1.62 5.89 -51.93 -0.31 1.31 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 26 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 254.13 15.07 3.83 3.83 Total: -1.00 -32.90 254.13 -5.59 -38.49 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -4.35 Total: -4.24 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 0.49 Total: 5.72 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.14 Total: -39.12 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.68 Total: -22.15 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.90 -5.59 -38.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021609.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.946 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds