Wall clock time and date at job start Thu Apr 9 2020 14:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46853 * 110.99722 * 2 1 4 4 C 1.53035 * 109.51817 * 174.16145 * 3 2 1 5 5 C 1.53121 * 109.28363 * 59.17999 * 4 3 2 6 6 C 1.53121 * 109.14785 * 302.33944 * 5 4 3 7 7 H 1.08997 * 109.51150 * 297.72106 * 6 5 4 8 8 C 1.50698 * 109.49349 * 177.60368 * 6 5 4 9 9 O 1.20828 * 120.00258 * 240.20176 * 8 6 5 10 10 O 1.34233 * 119.99692 * 60.20415 * 8 6 5 11 11 C 1.46839 * 110.99953 * 235.79087 * 2 1 3 12 12 H 1.09003 * 109.46696 * 65.83266 * 11 2 1 13 13 C 1.50702 * 109.46231 * 305.85333 * 11 2 1 14 14 H 1.07998 * 120.00287 * 294.62193 * 13 11 2 15 15 C 1.37882 * 119.99894 * 114.62069 * 13 11 2 16 16 N 1.31514 * 120.00068 * 352.70592 * 15 13 11 17 17 Si 1.86802 * 119.99725 * 172.43064 * 15 13 11 18 18 H 1.48498 * 109.47066 * 90.00268 * 17 15 13 19 19 H 1.48498 * 109.46732 * 210.00153 * 17 15 13 20 20 H 1.48502 * 109.47204 * 329.99835 * 17 15 13 21 21 H 1.08998 * 109.47209 * 190.07050 * 1 2 3 22 22 H 1.08993 * 109.47177 * 310.07682 * 1 2 3 23 23 H 1.09007 * 109.46920 * 70.07240 * 1 2 3 24 24 H 1.09000 * 109.45968 * 294.17493 * 3 2 1 25 25 H 1.08996 * 109.46050 * 54.15460 * 3 2 1 26 26 H 1.09010 * 109.50237 * 179.11813 * 4 3 2 27 27 H 1.08995 * 109.50294 * 299.23346 * 4 3 2 28 28 H 1.08993 * 109.52166 * 62.24182 * 5 4 3 29 29 H 1.08998 * 109.52215 * 182.37922 * 5 4 3 30 30 H 0.96700 * 117.00004 * 180.02562 * 10 8 6 31 31 H 0.96999 * 120.00236 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1189 0.5370 -1.0144 6 6 3.5181 -0.8714 -1.0205 7 1 3.7812 -1.3835 -0.0950 8 6 4.0600 -1.6441 -2.1954 9 8 3.3058 -2.0709 -3.0375 10 8 5.3804 -1.8583 -2.3064 11 6 1.9953 -0.7707 -1.1337 12 1 1.7326 -0.2707 -2.0660 13 6 1.3982 -2.1544 -1.1205 14 1 1.6250 -2.8327 -0.3113 15 6 0.5624 -2.5543 -2.1416 16 7 0.1713 -1.6867 -3.0492 17 14 -0.0081 -4.3303 -2.2401 18 1 -1.2729 -4.4869 -1.4778 19 1 -0.2374 -4.6985 -3.6603 20 1 1.0323 -5.2174 -1.6605 21 1 -0.3633 -1.0118 0.1797 22 1 -0.3633 0.6616 0.7863 23 1 -0.3633 0.3503 -0.9662 24 1 1.7324 1.8608 -0.9376 25 1 1.5635 1.9257 0.8330 26 1 3.9099 2.3513 0.1310 27 1 3.7813 0.8568 1.0906 28 1 3.8887 1.0354 -1.9560 29 1 5.1999 0.4724 -0.8910 30 1 5.6807 -2.3587 -3.0774 31 1 -0.4164 -1.9681 -3.7678 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277298.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:11 Heat of formation + Delta-G solvation = -114.506639 kcal Electronic energy + Delta-G solvation = -15307.972254 eV Core-core repulsion = 12781.142192 eV Total energy + Delta-G solvation = -2526.830063 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21516 -39.22064 -36.73929 -34.85676 -34.09244 -31.81018 -27.92728 -26.76762 -25.09923 -22.90927 -22.03251 -20.33987 -18.66449 -18.44100 -17.45372 -16.53789 -16.31743 -15.73205 -15.46730 -15.05774 -14.60058 -14.22504 -13.99863 -13.74613 -13.10644 -12.90503 -12.78777 -12.46727 -12.34907 -12.15129 -12.09713 -11.72172 -11.56304 -11.30567 -11.02461 -10.71974 -10.44416 -8.85755 -8.05096 -6.11765 1.35089 1.38690 1.46255 1.64367 2.39366 2.44716 3.22140 3.65721 4.05913 4.11575 4.23864 4.44600 4.63244 4.71603 4.81145 4.93104 4.99749 5.05398 5.08188 5.16327 5.29834 5.42062 5.48131 5.61570 5.78269 5.91217 6.17297 6.47504 6.84296 7.04340 7.39400 7.56109 9.01993 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026772 B = 0.015771 C = 0.010946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.605982 B = 1774.979386 C = 2557.374395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.548 5.548 3 C 0.043 3.957 4 C -0.102 4.102 5 C -0.106 4.106 6 C -0.065 4.065 7 H 0.100 0.900 8 C 0.475 3.525 9 O -0.515 6.515 10 O -0.519 6.519 11 C 0.219 3.781 12 H 0.004 0.996 13 C -0.510 4.510 14 H 0.042 0.958 15 C 0.048 3.952 16 N -0.908 5.908 17 Si 0.934 3.066 18 H -0.271 1.271 19 H -0.291 1.291 20 H -0.274 1.274 21 H 0.048 0.952 22 H 0.069 0.931 23 H -0.006 1.006 24 H 0.004 0.996 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.415 0.585 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.814 4.671 4.980 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.273 5.273 3 C -0.085 4.085 4 C -0.139 4.139 5 C -0.144 4.144 6 C -0.085 4.085 7 H 0.118 0.882 8 C 0.316 3.684 9 O -0.401 6.401 10 O -0.333 6.333 11 C 0.112 3.888 12 H 0.022 0.978 13 C -0.548 4.548 14 H 0.061 0.939 15 C -0.153 4.153 16 N -0.546 5.546 17 Si 0.761 3.239 18 H -0.197 1.197 19 H -0.218 1.218 20 H -0.199 1.199 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.012 0.988 24 H 0.023 0.977 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.275 0.725 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.511 4.571 5.347 10.290 hybrid contribution -0.785 -1.149 -1.871 2.331 sum 6.726 3.422 3.476 8.309 Atomic orbital electron populations 1.21785 0.88071 1.00837 0.97602 1.62238 1.07551 1.12059 1.45421 1.22259 0.96863 0.90175 0.99222 1.21532 0.93295 1.00848 0.98251 1.21596 1.00966 0.92610 0.99233 1.21109 0.97565 0.95895 0.93928 0.88184 1.23703 0.79583 0.77684 0.87421 1.90796 1.59151 1.47751 1.42451 1.84495 1.25428 1.71630 1.51733 1.19033 0.88395 0.93138 0.88218 0.97771 1.20908 1.28689 0.98395 1.06823 0.93924 1.25362 0.95381 0.99474 0.95085 1.70002 1.34665 1.35134 1.14848 0.85945 0.78636 0.82525 0.76785 1.19701 1.21752 1.19857 0.93282 0.91279 0.98782 0.97725 0.89748 0.88675 0.90263 0.93723 0.88997 0.72512 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.90 9.14 127.69 1.17 4.07 16 2 N -0.55 -23.94 4.74 -901.59 -4.27 -28.21 16 3 C 0.04 1.50 5.46 86.32 0.47 1.97 16 4 C -0.10 -2.88 6.09 30.65 0.19 -2.69 16 5 C -0.11 -3.46 5.22 30.68 0.16 -3.30 16 6 C -0.06 -2.69 2.31 -11.49 -0.03 -2.72 16 7 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 8 C 0.47 20.36 7.35 71.24 0.52 20.88 16 9 O -0.52 -27.16 14.98 21.96 0.33 -26.84 16 10 O -0.52 -16.58 13.36 -51.45 -0.69 -17.27 16 11 C 0.22 10.92 1.29 44.19 0.06 10.98 16 12 H 0.00 0.26 6.92 -2.39 -0.02 0.24 16 13 C -0.51 -28.38 5.50 25.60 0.14 -28.24 16 14 H 0.04 2.41 7.82 -2.91 -0.02 2.38 16 15 C 0.05 2.78 4.64 84.66 0.39 3.17 16 16 N -0.91 -54.98 12.65 21.45 0.27 -54.71 16 17 Si 0.93 46.19 29.54 68.60 2.03 48.22 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 20 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 21 H 0.05 2.36 7.17 -2.39 -0.02 2.34 16 22 H 0.07 2.49 7.99 -2.39 -0.02 2.47 16 23 H -0.01 -0.33 8.12 -2.38 -0.02 -0.35 16 24 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 25 H 0.08 2.50 8.01 -2.39 -0.02 2.48 16 26 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.42 9.58 9.10 -74.06 -0.67 8.91 16 31 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -69.40 255.91 1.19 -68.21 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.45 Total: 6.48 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 3.07 Total: 4.12 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -4.00 Total: -82.93 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.36 Total: -44.10 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -69.40 1.19 -68.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277298.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.297 kcal (2) G-P(sol) polarization free energy of solvation -69.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds