Wall clock time and date at job start Thu Apr 9 2020 14:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46851 * 110.99655 * 2 1 4 4 C 1.53043 * 109.51876 * 174.15862 * 3 2 1 5 5 C 1.53114 * 109.27565 * 59.18276 * 4 3 2 6 6 C 1.53124 * 109.16490 * 302.34356 * 5 4 3 7 7 H 1.09000 * 109.53131 * 297.69805 * 6 5 4 8 8 C 1.50699 * 109.50447 * 177.59720 * 6 5 4 9 9 O 1.20823 * 119.99482 * 240.19400 * 8 6 5 10 10 O 1.34228 * 120.00101 * 60.19991 * 8 6 5 11 11 C 1.46847 * 110.99843 * 235.79453 * 2 1 3 12 12 H 1.09005 * 109.46282 * 305.85350 * 11 2 1 13 13 C 1.50699 * 109.46289 * 65.83150 * 11 2 1 14 14 H 1.07999 * 120.00064 * 65.28475 * 13 11 2 15 15 C 1.37871 * 120.00106 * 245.27561 * 13 11 2 16 16 N 1.31517 * 120.00201 * 5.06231 * 15 13 11 17 17 Si 1.86803 * 120.00290 * 185.06415 * 15 13 11 18 18 H 1.48502 * 109.47177 * 89.99886 * 17 15 13 19 19 H 1.48502 * 109.47302 * 210.00175 * 17 15 13 20 20 H 1.48503 * 109.46723 * 330.00532 * 17 15 13 21 21 H 1.09000 * 109.47203 * 179.16632 * 1 2 3 22 22 H 1.08996 * 109.46965 * 59.16855 * 1 2 3 23 23 H 1.08998 * 109.47013 * 299.16947 * 1 2 3 24 24 H 1.08995 * 109.46394 * 294.17902 * 3 2 1 25 25 H 1.09002 * 109.45719 * 54.14561 * 3 2 1 26 26 H 1.08995 * 109.50301 * 299.23925 * 4 3 2 27 27 H 1.08999 * 109.50077 * 179.12017 * 4 3 2 28 28 H 1.09000 * 109.52136 * 182.43858 * 5 4 3 29 29 H 1.09005 * 109.52684 * 62.24725 * 5 4 3 30 30 H 0.96696 * 116.99922 * 180.02562 * 10 8 6 31 31 H 0.96999 * 120.00062 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 0.1468 5 6 4.1188 0.5371 -1.0143 6 6 3.5182 -0.8714 -1.0209 7 1 3.7814 -1.3842 -0.0958 8 6 4.0598 -1.6439 -2.1960 9 8 3.3055 -2.0705 -3.0379 10 8 5.3802 -1.8581 -2.3073 11 6 1.9953 -0.7707 -1.1338 12 1 1.5634 -1.7715 -1.1244 13 6 1.6321 -0.0793 -2.4227 14 1 2.0437 0.8933 -2.6483 15 6 0.7746 -0.6885 -3.3139 16 7 0.1955 -1.8259 -2.9965 17 14 0.4350 0.1015 -4.9722 18 1 1.4213 -0.3920 -5.9668 19 1 -0.9367 -0.2525 -5.4177 20 1 0.5508 1.5770 -4.8505 21 1 -0.3633 -1.0276 -0.0150 22 1 -0.3633 0.5267 -0.8824 23 1 -0.3633 0.5009 0.8973 24 1 1.7324 1.8609 -0.9375 25 1 1.5633 1.9257 0.8330 26 1 3.7814 0.8568 1.0906 27 1 3.9099 2.3513 0.1311 28 1 5.1998 0.4715 -0.8905 29 1 3.8887 1.0355 -1.9560 30 1 5.6804 -2.3584 -3.0784 31 1 -0.4081 -2.2543 -3.6234 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261277300.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:15 Heat of formation + Delta-G solvation = -89.558687 kcal Electronic energy + Delta-G solvation = -15445.972225 eV Core-core repulsion = 12920.223987 eV Total energy + Delta-G solvation = -2525.748238 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.53642 -37.62755 -35.05746 -32.77907 -32.22048 -29.95819 -26.15540 -24.78992 -23.32901 -21.53633 -20.40697 -18.69468 -16.94267 -15.89580 -15.67154 -14.76853 -14.66194 -14.04337 -13.77767 -13.26567 -12.88660 -12.51592 -12.12313 -11.85603 -11.47017 -11.17416 -10.87966 -10.68296 -10.59027 -10.48015 -10.29135 -9.98130 -9.79372 -9.40398 -9.15089 -8.87539 -8.38160 -7.00510 -5.91417 -3.99319 3.31921 3.38455 3.40034 3.42624 3.97974 4.49746 5.23337 5.44826 5.64364 5.67433 5.86963 6.10445 6.32509 6.32816 6.43689 6.50896 6.59655 6.63648 6.74247 6.84549 7.04239 7.09886 7.19171 7.42000 7.61468 7.93074 8.24418 8.33490 8.56291 9.00875 9.09764 9.69177 11.13478 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.017492 C = 0.012526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.777702 B = 1600.390081 C = 2234.864082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.107 4.107 5 C -0.102 4.102 6 C -0.059 4.059 7 H 0.080 0.920 8 C 0.468 3.532 9 O -0.461 6.461 10 O -0.540 6.540 11 C 0.204 3.796 12 H 0.086 0.914 13 C -0.540 4.540 14 H 0.050 0.950 15 C 0.099 3.901 16 N -0.873 5.873 17 Si 0.878 3.122 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.059 0.941 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.392 0.608 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 2.986 4.114 7.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.079 4.079 7 H 0.098 0.902 8 C 0.307 3.693 9 O -0.343 6.343 10 O -0.352 6.352 11 C 0.099 3.901 12 H 0.104 0.896 13 C -0.579 4.579 14 H 0.068 0.932 15 C -0.107 4.107 16 N -0.509 5.509 17 Si 0.707 3.293 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.248 0.752 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.583 2.704 4.588 7.715 hybrid contribution -0.230 0.429 -2.401 2.449 sum 5.353 3.133 2.187 6.576 Atomic orbital electron populations 1.21872 0.88276 1.01277 0.98145 1.62508 1.07376 1.11739 1.45338 1.21857 0.93904 0.92025 0.99510 1.21479 0.96116 0.98693 0.98222 1.21428 0.98114 0.94772 0.99685 1.21085 1.00175 0.94265 0.92418 0.90196 1.23621 0.78774 0.78655 0.88274 1.90810 1.57700 1.45389 1.40386 1.84583 1.28332 1.71903 1.50424 1.19345 0.86232 0.97260 0.87300 0.89641 1.21230 1.28672 1.03786 1.04196 0.93198 1.24748 0.94631 0.94150 0.97136 1.69836 1.28870 1.16818 1.35404 0.86841 0.77313 0.79425 0.85747 1.20699 1.21410 1.20271 0.92243 0.94959 0.94771 0.94057 0.93316 0.92153 0.92683 0.92814 0.91240 0.75180 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.14 9.28 60.07 0.56 1.70 16 2 N -0.55 -11.94 4.86 -236.31 -1.15 -13.09 16 3 C 0.06 1.08 5.21 -3.83 -0.02 1.06 16 4 C -0.11 -1.82 6.09 -26.65 -0.16 -1.98 16 5 C -0.10 -1.90 4.95 -26.61 -0.13 -2.04 16 6 C -0.06 -1.25 2.57 -91.69 -0.24 -1.49 16 7 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 8 C 0.47 10.15 7.34 36.01 0.26 10.42 16 9 O -0.46 -11.92 14.86 -18.75 -0.28 -12.20 16 10 O -0.54 -9.32 13.36 -39.25 -0.52 -9.84 16 11 C 0.20 4.97 1.84 -68.87 -0.13 4.84 16 12 H 0.09 2.41 6.87 -51.93 -0.36 2.05 16 13 C -0.54 -14.29 4.33 -34.44 -0.15 -14.44 16 14 H 0.05 1.35 5.70 -52.49 -0.30 1.05 16 15 C 0.10 2.74 4.58 -17.82 -0.08 2.66 16 16 N -0.87 -25.14 12.63 55.43 0.70 -24.44 16 17 Si 0.88 21.96 29.54 -169.99 -5.02 16.94 16 18 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 22 H 0.03 0.76 7.44 -51.93 -0.39 0.37 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.89 6.47 -51.93 -0.34 0.55 16 25 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.42 6.64 -51.93 -0.35 1.07 16 30 H 0.39 5.07 9.10 45.56 0.41 5.48 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 250.22 15.07 3.77 3.77 Total: -1.00 -30.44 250.22 -5.99 -36.42 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.40 Total: 1.70 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.09 Total: 0.73 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.45 Total: -37.52 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.80 Total: -22.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.44 -5.99 -36.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277300.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.137 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds