Wall clock time and date at job start Thu Apr 9 2020 14:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46851 * 110.99655 * 2 1 4 4 C 1.53043 * 109.51876 * 174.15862 * 3 2 1 5 5 C 1.53114 * 109.27565 * 59.18276 * 4 3 2 6 6 C 1.53124 * 109.16490 * 302.34356 * 5 4 3 7 7 H 1.09000 * 109.53131 * 297.69805 * 6 5 4 8 8 C 1.50699 * 109.50447 * 177.59720 * 6 5 4 9 9 O 1.20823 * 119.99482 * 240.19400 * 8 6 5 10 10 O 1.34228 * 120.00101 * 60.19991 * 8 6 5 11 11 C 1.46847 * 110.99843 * 235.79453 * 2 1 3 12 12 H 1.09005 * 109.46282 * 305.85350 * 11 2 1 13 13 C 1.50699 * 109.46289 * 65.83150 * 11 2 1 14 14 H 1.07999 * 120.00064 * 65.28475 * 13 11 2 15 15 C 1.37871 * 120.00106 * 245.27561 * 13 11 2 16 16 N 1.31517 * 120.00201 * 5.06231 * 15 13 11 17 17 Si 1.86803 * 120.00290 * 185.06415 * 15 13 11 18 18 H 1.48502 * 109.47177 * 89.99886 * 17 15 13 19 19 H 1.48502 * 109.47302 * 210.00175 * 17 15 13 20 20 H 1.48503 * 109.46723 * 330.00532 * 17 15 13 21 21 H 1.09000 * 109.47203 * 179.16632 * 1 2 3 22 22 H 1.08996 * 109.46965 * 59.16855 * 1 2 3 23 23 H 1.08998 * 109.47013 * 299.16947 * 1 2 3 24 24 H 1.08995 * 109.46394 * 294.17902 * 3 2 1 25 25 H 1.09002 * 109.45719 * 54.14561 * 3 2 1 26 26 H 1.08995 * 109.50301 * 299.23925 * 4 3 2 27 27 H 1.08999 * 109.50077 * 179.12017 * 4 3 2 28 28 H 1.09000 * 109.52136 * 182.43858 * 5 4 3 29 29 H 1.09005 * 109.52684 * 62.24725 * 5 4 3 30 30 H 0.96696 * 116.99922 * 180.02562 * 10 8 6 31 31 H 0.96999 * 120.00062 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 0.1468 5 6 4.1188 0.5371 -1.0143 6 6 3.5182 -0.8714 -1.0209 7 1 3.7814 -1.3842 -0.0958 8 6 4.0598 -1.6439 -2.1960 9 8 3.3055 -2.0705 -3.0379 10 8 5.3802 -1.8581 -2.3073 11 6 1.9953 -0.7707 -1.1338 12 1 1.5634 -1.7715 -1.1244 13 6 1.6321 -0.0793 -2.4227 14 1 2.0437 0.8933 -2.6483 15 6 0.7746 -0.6885 -3.3139 16 7 0.1955 -1.8259 -2.9965 17 14 0.4350 0.1015 -4.9722 18 1 1.4213 -0.3920 -5.9668 19 1 -0.9367 -0.2525 -5.4177 20 1 0.5508 1.5770 -4.8505 21 1 -0.3633 -1.0276 -0.0150 22 1 -0.3633 0.5267 -0.8824 23 1 -0.3633 0.5009 0.8973 24 1 1.7324 1.8609 -0.9375 25 1 1.5633 1.9257 0.8330 26 1 3.7814 0.8568 1.0906 27 1 3.9099 2.3513 0.1311 28 1 5.1998 0.4715 -0.8905 29 1 3.8887 1.0355 -1.9560 30 1 5.6804 -2.3584 -3.0784 31 1 -0.4081 -2.2543 -3.6234 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277300.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:15 Heat of formation + Delta-G solvation = -112.249922 kcal Electronic energy + Delta-G solvation = -15446.956191 eV Core-core repulsion = 12920.223987 eV Total energy + Delta-G solvation = -2526.732204 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.22921 -39.29596 -36.69989 -34.58600 -34.06443 -31.64275 -28.02303 -26.61571 -25.06036 -23.16912 -21.99031 -20.50559 -18.58603 -17.79198 -17.41204 -16.59068 -16.40982 -15.72604 -15.49652 -15.00202 -14.55135 -14.21734 -13.78958 -13.57660 -13.22803 -12.97821 -12.84656 -12.46049 -12.35413 -12.17438 -11.98385 -11.63584 -11.51124 -11.12671 -10.92760 -10.72112 -10.44945 -8.84798 -7.99122 -6.10879 1.31393 1.35981 1.40276 1.67765 2.42072 2.45315 3.27010 3.71187 4.12322 4.22351 4.30916 4.51584 4.71584 4.80866 4.90178 5.01123 5.04183 5.15560 5.20954 5.24972 5.36115 5.43157 5.55016 5.66139 5.82467 5.93102 6.26668 6.49029 6.77762 7.04180 7.42646 7.58246 9.03006 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.017492 C = 0.012526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.777702 B = 1600.390081 C = 2234.864082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.544 5.544 3 C 0.053 3.947 4 C -0.101 4.101 5 C -0.096 4.096 6 C -0.063 4.063 7 H 0.097 0.903 8 C 0.473 3.527 9 O -0.513 6.513 10 O -0.521 6.521 11 C 0.209 3.791 12 H 0.040 0.960 13 C -0.528 4.528 14 H 0.043 0.957 15 C 0.053 3.947 16 N -0.903 5.903 17 Si 0.922 3.078 18 H -0.289 1.289 19 H -0.286 1.286 20 H -0.269 1.269 21 H 0.037 0.963 22 H 0.005 0.995 23 H 0.070 0.930 24 H 0.016 0.984 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.414 0.586 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.601 4.419 5.297 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.268 5.268 3 C -0.075 4.075 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.084 4.084 7 H 0.115 0.885 8 C 0.314 3.686 9 O -0.399 6.399 10 O -0.335 6.335 11 C 0.102 3.898 12 H 0.058 0.942 13 C -0.567 4.567 14 H 0.061 0.939 15 C -0.149 4.149 16 N -0.541 5.541 17 Si 0.750 3.250 18 H -0.215 1.215 19 H -0.211 1.211 20 H -0.194 1.194 21 H 0.056 0.944 22 H 0.023 0.977 23 H 0.088 0.912 24 H 0.034 0.966 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.274 0.726 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.269 4.158 5.777 10.174 hybrid contribution -0.659 -0.012 -2.713 2.792 sum 6.610 4.146 3.065 8.382 Atomic orbital electron populations 1.21813 0.88505 0.99955 0.98568 1.62497 1.07244 1.13392 1.43652 1.22006 0.96109 0.90127 0.99304 1.21496 0.93801 1.00462 0.98069 1.21411 0.99782 0.92708 0.99457 1.21058 0.97928 0.96385 0.92984 0.88458 1.23749 0.79584 0.77595 0.87668 1.90810 1.59244 1.47570 1.42239 1.84497 1.25683 1.71738 1.51550 1.19093 0.88471 0.95020 0.87240 0.94196 1.21389 1.27333 1.03143 1.04856 0.93890 1.25315 0.95206 0.94704 0.99671 1.69964 1.30028 1.18152 1.35999 0.86138 0.76916 0.79107 0.82836 1.21548 1.21142 1.19372 0.94411 0.97651 0.91178 0.96553 0.90687 0.90420 0.89519 0.89930 0.93492 0.72635 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.60 9.28 127.69 1.19 3.78 16 2 N -0.54 -23.22 4.86 -901.56 -4.38 -27.60 16 3 C 0.05 1.91 5.21 86.33 0.45 2.36 16 4 C -0.10 -2.99 6.09 30.65 0.19 -2.81 16 5 C -0.10 -3.27 4.95 30.67 0.15 -3.12 16 6 C -0.06 -2.59 2.57 -11.49 -0.03 -2.61 16 7 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 8 C 0.47 20.05 7.34 71.24 0.52 20.58 16 9 O -0.51 -26.81 14.86 21.97 0.33 -26.48 16 10 O -0.52 -16.63 13.36 -51.39 -0.69 -17.31 16 11 C 0.21 10.17 1.84 44.19 0.08 10.25 16 12 H 0.04 2.32 6.87 -2.38 -0.02 2.30 16 13 C -0.53 -28.27 4.33 25.60 0.11 -28.16 16 14 H 0.04 2.33 5.70 -2.91 -0.02 2.31 16 15 C 0.05 2.99 4.58 84.65 0.39 3.38 16 16 N -0.90 -53.87 12.63 21.45 0.27 -53.60 16 17 Si 0.92 45.78 29.54 68.60 2.03 47.81 16 18 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 21 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 22 H 0.00 0.23 7.44 -2.39 -0.02 0.22 16 23 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.02 0.67 6.47 -2.39 -0.02 0.66 16 25 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.05 1.81 6.64 -2.38 -0.02 1.80 16 30 H 0.41 9.64 9.10 -74.06 -0.67 8.97 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -66.99 250.22 1.06 -65.93 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.46 Total: 7.61 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 3.05 Total: 3.65 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -4.11 Total: -81.20 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.36 Total: -43.79 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -66.99 1.06 -65.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277300.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.321 kcal (2) G-P(sol) polarization free energy of solvation -66.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds