Wall clock time and date at job start Thu Apr 9 2020 14:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46843 * 110.99970 * 2 1 4 4 C 1.53042 * 109.52278 * 174.15687 * 3 2 1 5 5 C 1.53127 * 109.27596 * 59.17923 * 4 3 2 6 6 C 1.53123 * 109.15019 * 302.34079 * 5 4 3 7 7 C 1.50701 * 109.51016 * 297.71997 * 6 5 4 8 8 H 1.07998 * 119.99979 * 359.81445 * 7 6 5 9 9 C 1.37874 * 119.99647 * 179.80995 * 7 6 5 10 10 N 1.31520 * 120.00276 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00056 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46658 * 59.99951 * 11 9 7 13 13 H 1.48493 * 109.47382 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.46928 * 300.00138 * 11 9 7 15 15 C 1.50704 * 109.49150 * 177.60758 * 6 5 4 16 16 O 1.20828 * 119.99815 * 0.19561 * 15 6 5 17 17 O 1.34227 * 119.99982 * 180.20219 * 15 6 5 18 18 C 1.46847 * 110.99982 * 235.78635 * 2 1 3 19 19 H 1.09000 * 109.47319 * 184.20936 * 1 2 3 20 20 H 1.09002 * 109.47520 * 304.21131 * 1 2 3 21 21 H 1.09003 * 109.47227 * 64.20889 * 1 2 3 22 22 H 1.08993 * 109.46313 * 294.17341 * 3 2 1 23 23 H 1.09004 * 109.46429 * 54.14692 * 3 2 1 24 24 H 1.08997 * 109.50758 * 179.11703 * 4 3 2 25 25 H 1.08999 * 109.50480 * 299.24136 * 4 3 2 26 26 H 1.09003 * 109.52393 * 62.24889 * 5 4 3 27 27 H 1.08997 * 109.52177 * 182.37978 * 5 4 3 28 28 H 0.96994 * 120.00313 * 179.97438 * 10 9 7 29 29 H 0.96701 * 116.99999 * 179.97438 * 17 15 6 30 30 H 1.09002 * 109.46481 * 305.85957 * 18 2 1 31 31 H 1.08994 * 109.46283 * 65.83811 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5368 -1.0143 6 6 3.5180 -0.8716 -1.0205 7 6 3.8818 -1.5795 0.2592 8 1 4.4839 -1.0772 1.0019 9 6 3.4457 -2.8684 0.4819 10 7 2.7127 -3.4802 -0.4226 11 14 3.8959 -3.7458 2.0684 12 1 3.3629 -2.9818 3.2249 13 1 3.3096 -5.1101 2.0632 14 1 5.3736 -3.8430 2.1781 15 6 4.0599 -1.6443 -2.1954 16 8 4.8486 -1.1241 -2.9486 17 8 3.6664 -2.9103 -2.4051 18 6 1.9952 -0.7709 -1.1337 19 1 -0.3634 -1.0249 0.0754 20 1 -0.3634 0.5778 0.8498 21 1 -0.3634 0.4471 -0.9253 22 1 1.7324 1.8608 -0.9375 23 1 1.5634 1.9257 0.8330 24 1 3.9099 2.3511 0.1311 25 1 3.7813 0.8567 1.0907 26 1 3.8887 1.0353 -1.9560 27 1 5.1998 0.4722 -0.8910 28 1 2.4063 -4.3870 -0.2662 29 1 4.0410 -3.3652 -3.1718 30 1 1.5633 -1.7716 -1.1242 31 1 1.7326 -0.2709 -2.0659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261321016.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:16 Heat of formation + Delta-G solvation = -78.404568 kcal Electronic energy + Delta-G solvation = -15535.651467 eV Core-core repulsion = 13010.386908 eV Total energy + Delta-G solvation = -2525.264559 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.25216 -37.43612 -34.52962 -33.42358 -32.01192 -29.76691 -25.94433 -25.06702 -23.13645 -21.92613 -20.11517 -18.63167 -16.67904 -16.00354 -15.39239 -14.63088 -14.33330 -13.96674 -13.80156 -13.26165 -12.96006 -12.51885 -11.97121 -11.68570 -11.47180 -11.25425 -10.87170 -10.85949 -10.64754 -10.23780 -10.05469 -9.93839 -9.85647 -9.28091 -9.15707 -8.94435 -8.24435 -7.29133 -5.94268 -4.07035 3.35551 3.38526 3.42349 3.80337 4.44218 4.63962 5.00840 5.33658 5.69167 5.76862 5.88296 6.02359 6.09960 6.21748 6.40450 6.45409 6.49999 6.52876 6.69720 6.85894 7.00794 7.11466 7.13022 7.57993 7.90404 7.94521 8.06904 8.09155 8.29840 8.83286 9.53294 9.57497 11.02518 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.017145 C = 0.013429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.465293 B = 1632.753448 C = 2084.537011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.515 5.515 3 C 0.060 3.940 4 C -0.107 4.107 5 C -0.092 4.092 6 C 0.083 3.917 7 C -0.491 4.491 8 H 0.065 0.935 9 C 0.068 3.932 10 N -0.835 5.835 11 Si 0.895 3.105 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.281 1.281 15 C 0.490 3.510 16 O -0.585 6.585 17 O -0.443 6.443 18 C 0.075 3.925 19 H 0.065 0.935 20 H 0.055 0.945 21 H 0.009 0.991 22 H 0.015 0.985 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.261 0.739 29 H 0.348 0.652 30 H 0.115 0.885 31 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 4.039 0.269 5.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.238 5.238 3 C -0.068 4.068 4 C -0.144 4.144 5 C -0.130 4.130 6 C 0.081 3.919 7 C -0.528 4.528 8 H 0.083 0.917 9 C -0.137 4.137 10 N -0.472 5.472 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.207 1.207 15 C 0.336 3.664 16 O -0.480 6.480 17 O -0.245 6.245 18 C -0.053 4.053 19 H 0.084 0.916 20 H 0.074 0.926 21 H 0.027 0.973 22 H 0.033 0.967 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.201 0.799 30 H 0.133 0.867 31 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -2.913 3.948 0.824 4.975 hybrid contribution 0.243 -0.443 -0.475 0.693 sum -2.670 3.505 0.349 4.420 Atomic orbital electron populations 1.22265 0.89122 1.01641 0.98616 1.61708 1.05285 1.11736 1.45098 1.22022 0.96249 0.90157 0.98410 1.21503 0.94077 0.98130 1.00707 1.21390 0.99810 0.95329 0.96497 1.18007 0.92253 0.90119 0.91496 1.20582 1.33332 0.98502 1.00353 0.91714 1.24941 0.95072 0.97351 0.96347 1.69736 1.32942 1.12643 1.31896 0.86605 0.78415 0.78475 0.84167 1.20067 1.21447 1.20652 1.25137 0.77598 0.80112 0.83565 1.90498 1.37279 1.71441 1.48791 1.85623 1.65473 1.26519 1.46874 1.22168 0.96753 0.99407 0.86928 0.91619 0.92596 0.97270 0.96662 0.92167 0.93299 0.90169 0.94069 0.92390 0.92834 0.79918 0.86677 0.99303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.59 60.06 0.58 1.14 16 2 N -0.51 -10.79 4.52 -242.97 -1.10 -11.89 16 3 C 0.06 1.11 5.46 -3.83 -0.02 1.09 16 4 C -0.11 -2.03 5.83 -26.64 -0.16 -2.19 16 5 C -0.09 -2.04 4.05 -26.60 -0.11 -2.15 16 6 C 0.08 2.04 0.48 -156.73 -0.08 1.96 16 7 C -0.49 -12.75 6.93 -34.44 -0.24 -12.99 16 8 H 0.06 1.69 6.87 -52.49 -0.36 1.33 16 9 C 0.07 1.77 5.08 -17.82 -0.09 1.67 16 10 N -0.84 -21.72 8.05 55.43 0.45 -21.27 16 11 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.49 12.45 6.89 36.01 0.25 12.70 16 16 O -0.58 -15.50 16.73 -18.75 -0.31 -15.82 16 17 O -0.44 -10.59 9.79 -39.25 -0.38 -10.97 16 18 C 0.08 1.75 3.91 -3.84 -0.01 1.73 16 19 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 20 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 21 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 22 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 23 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.63 6.82 -51.93 -0.35 1.28 16 26 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.26 6.60 8.31 -40.82 -0.34 6.27 16 29 H 0.35 6.74 9.10 45.56 0.41 7.15 16 30 H 0.12 2.93 6.03 -51.93 -0.31 2.61 16 31 H -0.01 -0.26 8.14 -51.93 -0.42 -0.68 16 LS Contribution 248.37 15.07 3.74 3.74 Total: -1.00 -28.86 248.37 -6.05 -34.90 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -3.54 Total: 2.69 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 0.12 Total: 2.97 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: -0.65 Total: -33.16 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.70 Total: -26.79 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.86 -6.05 -34.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321016.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.500 kcal (2) G-P(sol) polarization free energy of solvation -28.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds