Wall clock time and date at job start Thu Apr 9 2020 14:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46843 * 110.99970 * 2 1 4 4 C 1.53042 * 109.52278 * 174.15687 * 3 2 1 5 5 C 1.53127 * 109.27596 * 59.17923 * 4 3 2 6 6 C 1.53123 * 109.15019 * 302.34079 * 5 4 3 7 7 C 1.50701 * 109.51016 * 297.71997 * 6 5 4 8 8 H 1.07998 * 119.99979 * 359.81445 * 7 6 5 9 9 C 1.37874 * 119.99647 * 179.80995 * 7 6 5 10 10 N 1.31520 * 120.00276 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00056 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46658 * 59.99951 * 11 9 7 13 13 H 1.48493 * 109.47382 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.46928 * 300.00138 * 11 9 7 15 15 C 1.50704 * 109.49150 * 177.60758 * 6 5 4 16 16 O 1.20828 * 119.99815 * 0.19561 * 15 6 5 17 17 O 1.34227 * 119.99982 * 180.20219 * 15 6 5 18 18 C 1.46847 * 110.99982 * 235.78635 * 2 1 3 19 19 H 1.09000 * 109.47319 * 184.20936 * 1 2 3 20 20 H 1.09002 * 109.47520 * 304.21131 * 1 2 3 21 21 H 1.09003 * 109.47227 * 64.20889 * 1 2 3 22 22 H 1.08993 * 109.46313 * 294.17341 * 3 2 1 23 23 H 1.09004 * 109.46429 * 54.14692 * 3 2 1 24 24 H 1.08997 * 109.50758 * 179.11703 * 4 3 2 25 25 H 1.08999 * 109.50480 * 299.24136 * 4 3 2 26 26 H 1.09003 * 109.52393 * 62.24889 * 5 4 3 27 27 H 1.08997 * 109.52177 * 182.37978 * 5 4 3 28 28 H 0.96994 * 120.00313 * 179.97438 * 10 9 7 29 29 H 0.96701 * 116.99999 * 179.97438 * 17 15 6 30 30 H 1.09002 * 109.46481 * 305.85957 * 18 2 1 31 31 H 1.08994 * 109.46283 * 65.83811 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5368 -1.0143 6 6 3.5180 -0.8716 -1.0205 7 6 3.8818 -1.5795 0.2592 8 1 4.4839 -1.0772 1.0019 9 6 3.4457 -2.8684 0.4819 10 7 2.7127 -3.4802 -0.4226 11 14 3.8959 -3.7458 2.0684 12 1 3.3629 -2.9818 3.2249 13 1 3.3096 -5.1101 2.0632 14 1 5.3736 -3.8430 2.1781 15 6 4.0599 -1.6443 -2.1954 16 8 4.8486 -1.1241 -2.9486 17 8 3.6664 -2.9103 -2.4051 18 6 1.9952 -0.7709 -1.1337 19 1 -0.3634 -1.0249 0.0754 20 1 -0.3634 0.5778 0.8498 21 1 -0.3634 0.4471 -0.9253 22 1 1.7324 1.8608 -0.9375 23 1 1.5634 1.9257 0.8330 24 1 3.9099 2.3511 0.1311 25 1 3.7813 0.8567 1.0907 26 1 3.8887 1.0353 -1.9560 27 1 5.1998 0.4722 -0.8910 28 1 2.4063 -4.3870 -0.2662 29 1 4.0410 -3.3652 -3.1718 30 1 1.5633 -1.7716 -1.1242 31 1 1.7326 -0.2709 -2.0659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261321016.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:16 Heat of formation + Delta-G solvation = -98.051676 kcal Electronic energy + Delta-G solvation = -15536.503430 eV Core-core repulsion = 13010.386908 eV Total energy + Delta-G solvation = -2526.116522 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13332 -39.17506 -36.49279 -35.21908 -33.74845 -31.51563 -27.48374 -26.95303 -24.95678 -23.56065 -21.85000 -20.44958 -18.61653 -17.94177 -17.12355 -16.54255 -16.06462 -15.70879 -15.49612 -14.89975 -14.66784 -14.30849 -13.66247 -13.30060 -13.13242 -12.96079 -12.70099 -12.52249 -12.35251 -12.00624 -11.93082 -11.77685 -11.54685 -11.10805 -10.92767 -10.86619 -10.20641 -8.86545 -7.89498 -6.07130 1.51760 1.52551 1.57906 1.82144 2.53757 2.88406 3.36264 3.42898 4.16011 4.20302 4.34370 4.56910 4.60571 4.66721 4.81461 4.84945 4.96411 4.99732 5.09582 5.21795 5.27314 5.31368 5.53633 5.74754 5.96070 6.05005 6.23553 6.53539 6.57419 6.84138 7.55418 7.67041 9.05376 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.017145 C = 0.013429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.465293 B = 1632.753448 C = 2084.537011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.536 5.536 3 C 0.060 3.940 4 C -0.101 4.101 5 C -0.091 4.091 6 C 0.072 3.928 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.033 3.967 10 N -0.847 5.847 11 Si 0.946 3.054 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.484 3.516 16 O -0.603 6.603 17 O -0.449 6.449 18 C 0.089 3.911 19 H 0.055 0.945 20 H 0.082 0.918 21 H 0.020 0.980 22 H 0.023 0.977 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.260 0.740 29 H 0.368 0.632 30 H 0.090 0.910 31 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 4.860 1.070 6.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.260 5.260 3 C -0.068 4.068 4 C -0.138 4.138 5 C -0.129 4.129 6 C 0.070 3.930 7 C -0.540 4.540 8 H 0.075 0.925 9 C -0.171 4.171 10 N -0.483 5.483 11 Si 0.773 3.227 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.210 1.210 15 C 0.331 3.669 16 O -0.500 6.500 17 O -0.252 6.252 18 C -0.040 4.040 19 H 0.074 0.926 20 H 0.100 0.900 21 H 0.038 0.962 22 H 0.041 0.959 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.223 0.777 30 H 0.108 0.892 31 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -3.478 4.764 1.623 6.118 hybrid contribution 0.419 -0.719 -0.771 1.134 sum -3.059 4.045 0.852 5.143 Atomic orbital electron populations 1.22299 0.87164 1.01696 1.00301 1.61662 1.07266 1.13118 1.43954 1.22105 0.95644 0.89101 0.99968 1.21484 0.94746 0.99221 0.98397 1.21375 0.99058 0.94609 0.97808 1.18191 0.93275 0.91056 0.90502 1.20678 1.33554 0.98940 1.00838 0.92485 1.25469 0.95189 0.97906 0.98511 1.69864 1.33147 1.12552 1.32760 0.85812 0.77759 0.77594 0.81485 1.19976 1.21178 1.20994 1.25456 0.77259 0.80450 0.83753 1.90474 1.38083 1.71862 1.49560 1.85555 1.65527 1.26172 1.47971 1.21862 0.95730 0.98599 0.87777 0.92649 0.89967 0.96185 0.95913 0.89283 0.89981 0.91608 0.94251 0.93730 0.93016 0.77734 0.89157 0.99745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 9.59 127.69 1.22 2.32 16 2 N -0.54 -21.52 4.52 -922.61 -4.17 -25.69 16 3 C 0.06 2.03 5.46 86.33 0.47 2.50 16 4 C -0.10 -3.64 5.83 30.65 0.18 -3.46 16 5 C -0.09 -3.93 4.05 30.68 0.12 -3.81 16 6 C 0.07 3.49 0.48 -53.62 -0.03 3.46 16 7 C -0.50 -26.00 6.93 25.60 0.18 -25.82 16 8 H 0.06 2.97 6.87 -2.91 -0.02 2.95 16 9 C 0.03 1.71 5.08 84.65 0.43 2.14 16 10 N -0.85 -43.83 8.05 21.45 0.17 -43.66 16 11 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 C 0.48 24.63 6.89 71.24 0.49 25.12 16 16 O -0.60 -32.01 16.73 21.96 0.37 -31.64 16 17 O -0.45 -21.43 9.79 -51.39 -0.50 -21.93 16 18 C 0.09 4.09 3.91 86.32 0.34 4.42 16 19 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 20 H 0.08 2.25 8.09 -2.39 -0.02 2.23 16 21 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 22 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.09 2.54 8.09 -2.38 -0.02 2.52 16 24 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.07 2.57 6.82 -2.39 -0.02 2.55 16 26 H 0.04 1.68 8.05 -2.39 -0.02 1.66 16 27 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.26 13.06 8.31 -92.71 -0.77 12.29 16 29 H 0.37 14.10 9.10 -74.06 -0.67 13.43 16 30 H 0.09 4.60 6.03 -2.39 -0.01 4.59 16 31 H -0.02 -0.70 8.14 -2.39 -0.02 -0.72 16 Total: -1.00 -59.80 248.37 1.76 -58.04 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.45 Total: 13.96 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 3.41 Total: 6.88 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -3.99 Total: -69.34 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.14 Total: -53.58 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -59.80 1.76 -58.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321016.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.011 kcal (2) G-P(sol) polarization free energy of solvation -59.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds