Wall clock time and date at job start Thu Apr 9 2020 14:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08996 * 109.57146 * 2 1 4 4 C 1.53089 * 109.52327 * 239.83467 * 2 1 3 5 5 O 1.42907 * 109.41554 * 297.70566 * 4 2 1 6 6 C 1.42901 * 114.09433 * 298.83984 * 5 4 2 7 7 C 1.53089 * 109.41812 * 61.16312 * 6 5 4 8 8 C 1.53179 * 109.51877 * 120.14940 * 2 1 3 9 9 H 1.08998 * 109.54374 * 182.79215 * 8 2 1 10 10 C 1.50695 * 109.54690 * 303.06106 * 8 2 1 11 11 O 1.21291 * 120.00491 * 96.20126 * 10 8 2 12 12 N 1.34784 * 119.99630 * 276.20027 * 10 8 2 13 13 C 1.37094 * 119.99685 * 179.97438 * 12 10 8 14 14 H 1.08004 * 120.00286 * 0.02562 * 13 12 10 15 15 C 1.38949 * 120.00206 * 179.97438 * 13 12 10 16 16 N 1.31415 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00464 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46853 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46966 * 120.00201 * 17 15 13 20 20 H 1.48496 * 109.47271 * 240.00441 * 17 15 13 21 21 H 1.08994 * 109.47121 * 177.88692 * 1 2 3 22 22 H 1.08997 * 109.46993 * 297.88644 * 1 2 3 23 23 H 1.09000 * 109.46628 * 57.89129 * 1 2 3 24 24 H 1.08998 * 109.47593 * 177.71999 * 4 2 1 25 25 H 1.09004 * 109.49095 * 57.69229 * 4 2 1 26 26 H 1.09006 * 109.47387 * 181.13991 * 6 5 4 27 27 H 1.08995 * 109.48093 * 301.17516 * 6 5 4 28 28 H 1.08992 * 109.52750 * 182.48039 * 7 6 5 29 29 H 1.09000 * 109.57387 * 62.31960 * 7 6 5 30 30 H 0.96995 * 120.00401 * 0.02562 * 12 10 8 31 31 H 0.96998 * 120.00313 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7250 -1.2475 5 8 1.6099 -2.0869 -1.2160 6 6 2.0971 -2.8277 -0.0953 7 6 1.5877 -2.1873 1.1985 8 6 2.0419 -0.7251 1.2484 9 1 3.1307 -0.6823 1.2743 10 6 1.4802 -0.0647 2.4810 11 8 0.4845 -0.5129 3.0090 12 7 2.0843 1.0243 2.9967 13 6 1.5730 1.6255 4.1176 14 1 0.6863 1.2263 4.5878 15 6 2.1960 2.7477 4.6497 16 7 3.2751 3.2332 4.0780 17 14 1.4989 3.5674 6.1767 18 1 0.2880 2.8331 6.6235 19 1 2.5168 3.5469 7.2578 20 1 1.1382 4.9733 5.8629 21 1 -0.3633 -1.0269 -0.0379 22 1 -0.3633 0.4806 0.9083 23 1 -0.3632 0.5462 -0.8705 24 1 3.1309 -0.6894 -1.2675 25 1 1.6456 -0.2386 -2.1389 26 1 1.7407 -3.8560 -0.1567 27 1 3.1870 -2.8196 -0.1004 28 1 1.9940 -2.7244 2.0554 29 1 0.4989 -2.2314 1.2237 30 1 2.8803 1.3830 2.5743 31 1 3.7098 4.0168 4.4491 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300865086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:33 Heat of formation + Delta-G solvation = -124.409939 kcal Electronic energy + Delta-G solvation = -14783.624937 eV Core-core repulsion = 12256.365435 eV Total energy + Delta-G solvation = -2527.259502 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.25794 -39.31221 -36.07594 -35.09570 -33.22054 -32.70481 -28.44543 -27.39086 -25.87824 -23.92003 -21.67081 -20.19189 -19.53534 -17.88693 -17.25212 -16.79210 -16.53268 -16.12265 -15.88372 -15.59485 -14.74943 -14.30191 -14.22855 -13.67976 -13.51823 -12.98162 -12.91042 -12.56682 -12.45007 -12.29495 -12.15852 -12.09843 -11.57584 -11.42592 -11.20187 -10.64044 -10.10914 -10.02209 -8.49316 -5.98380 1.33947 1.39235 1.53409 2.02171 2.27559 2.98508 3.16280 3.19448 3.77857 3.80816 3.98913 4.07943 4.27741 4.43771 4.53342 4.58303 4.68261 4.77611 4.79001 4.88662 4.96575 5.17305 5.20032 5.25648 5.38735 5.46695 5.98072 6.30568 6.56549 7.09806 7.53876 8.09397 8.68216 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057283 B = 0.007689 C = 0.007492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.681244 B = 3640.470891 C = 3736.326838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 H 0.080 0.920 4 C 0.073 3.927 5 O -0.393 6.393 6 C 0.068 3.932 7 C -0.132 4.132 8 C -0.092 4.092 9 H 0.096 0.904 10 C 0.449 3.551 11 O -0.632 6.632 12 N -0.572 5.572 13 C -0.335 4.335 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.919 5.919 17 Si 0.992 3.008 18 H -0.275 1.275 19 H -0.269 1.269 20 H -0.270 1.270 21 H 0.057 0.943 22 H 0.022 0.978 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.395 0.605 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -5.964 -9.653 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 H 0.098 0.902 4 C -0.004 4.004 5 O -0.312 6.312 6 C -0.009 4.009 7 C -0.170 4.170 8 C -0.114 4.114 9 H 0.114 0.886 10 C 0.237 3.763 11 O -0.519 6.519 12 N -0.207 5.207 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.212 4.212 16 N -0.560 5.560 17 Si 0.816 3.184 18 H -0.199 1.199 19 H -0.194 1.194 20 H -0.195 1.195 21 H 0.076 0.924 22 H 0.041 0.959 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.149 -6.168 -9.387 11.291 hybrid contribution 0.176 0.957 1.185 1.533 sum 1.325 -5.211 -8.202 9.807 Atomic orbital electron populations 1.21692 0.95074 1.01898 1.00588 1.21718 0.96911 1.00032 0.94596 0.90189 1.22697 0.99388 0.81543 0.96730 1.87878 1.74832 1.22975 1.45497 1.22683 0.98899 0.95801 0.83505 1.21991 1.01960 0.93565 0.99517 1.21252 1.01045 0.96579 0.92501 0.88612 1.20766 0.85624 0.82377 0.87518 1.90471 1.29372 1.66908 1.65172 1.42004 1.27203 1.25710 1.25831 1.19700 1.11483 1.10278 1.05016 0.90527 1.26037 0.96126 0.96976 1.02064 1.69674 1.19720 1.24589 1.42015 0.84889 0.78164 0.77979 0.77412 1.19941 1.19445 1.19480 0.92422 0.95862 0.91049 0.91114 0.86793 0.86985 0.91281 0.91367 0.92157 0.77106 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.46 71.99 0.61 -4.00 16 2 C -0.11 -3.49 2.78 -10.70 -0.03 -3.52 16 3 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.07 1.71 6.25 72.01 0.45 2.16 16 5 O -0.39 -10.21 10.15 -148.98 -1.51 -11.73 16 6 C 0.07 1.60 6.84 72.01 0.49 2.09 16 7 C -0.13 -4.22 4.63 30.69 0.14 -4.08 16 8 C -0.09 -3.27 2.39 -11.42 -0.03 -3.30 16 9 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 10 C 0.45 21.80 5.76 87.65 0.50 22.31 16 11 O -0.63 -35.63 15.00 -3.06 -0.05 -35.67 16 12 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 13 C -0.34 -19.36 9.68 84.04 0.81 -18.54 16 14 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 15 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 16 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 17 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H 0.06 1.98 6.19 -2.39 -0.01 1.96 16 22 H 0.02 0.96 6.70 -2.39 -0.02 0.94 16 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 2.22 6.30 -2.39 -0.02 2.20 16 30 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 31 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -66.93 254.34 2.95 -63.98 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.40 Total: 26.28 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 3.42 Total: -7.08 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.34 Total: -81.14 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -1.56 Total: -47.40 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -66.93 2.95 -63.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300865086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.427 kcal (2) G-P(sol) polarization free energy of solvation -66.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds