Wall clock time and date at job start Thu Apr 9 2020 14:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.39223 * 2 1 4 4 C 1.54576 * 110.54674 * 237.50322 * 2 1 3 5 5 C 1.54490 * 102.14666 * 214.35604 * 4 2 1 6 6 H 1.08995 * 110.36548 * 256.50853 * 5 4 2 7 7 N 1.46901 * 110.36611 * 134.18337 * 5 4 2 8 8 C 1.46899 * 110.99815 * 302.09745 * 7 5 4 9 9 C 1.46898 * 111.00038 * 178.14513 * 7 5 4 10 10 C 1.50696 * 109.47261 * 189.99908 * 9 7 5 11 11 H 1.08007 * 120.00292 * 0.02562 * 10 9 7 12 12 C 1.37874 * 120.00130 * 180.02562 * 10 9 7 13 13 N 1.31512 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00148 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46851 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47062 * 119.99736 * 14 12 10 17 17 H 1.48495 * 109.47117 * 239.99880 * 14 12 10 18 18 C 1.51330 * 104.82289 * 15.34869 * 5 4 2 19 19 O 1.20827 * 125.08797 * 182.35293 * 18 5 4 20 20 O 1.34059 * 109.81174 * 2.30877 * 18 5 4 21 21 H 1.08997 * 109.47177 * 300.70235 * 1 2 3 22 22 H 1.08998 * 109.47237 * 60.70472 * 1 2 3 23 23 H 1.09000 * 109.46748 * 180.70044 * 1 2 3 24 24 H 1.09002 * 110.86557 * 332.52612 * 4 2 1 25 25 H 1.09001 * 110.86582 * 96.19094 * 4 2 1 26 26 H 1.09005 * 109.47416 * 60.00272 * 8 7 5 27 27 H 1.09006 * 109.47011 * 179.97438 * 8 7 5 28 28 H 1.08992 * 109.47648 * 299.99851 * 8 7 5 29 29 H 1.08994 * 109.47115 * 310.00148 * 9 7 5 30 30 H 1.09001 * 109.46830 * 70.00195 * 9 7 5 31 31 H 0.96999 * 120.00217 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0725 -0.7776 -1.2208 5 6 3.3541 -1.4249 -0.6505 6 1 4.2369 -0.8875 -0.9968 7 7 3.4296 -2.8392 -1.0404 8 6 2.2474 -3.5772 -0.5758 9 6 4.6655 -3.4575 -0.5422 10 6 4.8290 -4.8222 -1.1601 11 1 4.0891 -5.1931 -1.8540 12 6 5.9233 -5.5974 -0.8398 13 7 6.8241 -5.1461 0.0055 14 14 6.1264 -7.2888 -1.6063 15 1 4.9846 -7.5601 -2.5163 16 1 7.3953 -7.3341 -2.3763 17 1 6.1602 -8.3168 -0.5352 18 6 3.2161 -1.2992 0.8512 19 8 4.0431 -1.6554 1.6569 20 8 2.0394 -0.7326 1.1535 21 1 -0.3633 0.5247 0.8836 22 1 -0.3633 0.5028 -0.8962 23 1 -0.3633 -1.0276 0.0126 24 1 1.3626 -1.5397 -1.5425 25 1 2.3117 -0.0982 -2.0389 26 1 1.3506 -3.1408 -1.0156 27 1 2.3288 -4.6213 -0.8782 28 1 2.1854 -3.5171 0.5107 29 1 5.5177 -2.8329 -0.8099 30 1 4.6120 -3.5537 0.5422 31 1 7.5941 -5.6913 0.2306 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306286766.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:39 Heat of formation + Delta-G solvation = -74.816098 kcal Electronic energy + Delta-G solvation = -14795.412701 eV Core-core repulsion = 12270.303750 eV Total energy + Delta-G solvation = -2525.108952 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91903 -37.23074 -36.27271 -32.90830 -32.20635 -29.72763 -27.17277 -25.62036 -23.78674 -21.66686 -21.56061 -19.64535 -17.22923 -16.57502 -16.24991 -15.51417 -14.98158 -14.51045 -14.10733 -13.68720 -13.22542 -12.90719 -12.76248 -12.21996 -11.98097 -11.83164 -11.69737 -11.22887 -11.05046 -10.87296 -10.59759 -10.42091 -10.28343 -10.05224 -9.88245 -9.20655 -8.42893 -7.39847 -5.99269 -4.02435 2.48461 3.32554 3.39217 3.41671 3.44128 4.21163 4.43496 4.51278 4.60518 4.89078 5.01968 5.16967 5.35531 5.36641 5.50191 5.70243 5.81090 5.92369 5.95749 6.10605 6.19651 6.64080 7.03388 7.15937 7.42746 7.72684 7.85613 7.99673 8.12343 8.45493 9.04394 9.60927 11.11292 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056682 B = 0.007963 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.867495 B = 3515.631573 C = 3773.219062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.077 3.923 3 H 0.091 0.909 4 C -0.149 4.149 5 C 0.025 3.975 6 H 0.117 0.883 7 N -0.506 5.506 8 C 0.024 3.976 9 C 0.183 3.817 10 C -0.513 4.513 11 H 0.064 0.936 12 C 0.056 3.944 13 N -0.893 5.893 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.446 3.554 19 O -0.441 6.441 20 O -0.357 6.357 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.014 0.986 29 H 0.032 0.968 30 H 0.013 0.987 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.794 10.041 -2.933 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.108 0.892 4 C -0.187 4.187 5 C -0.086 4.086 6 H 0.134 0.866 7 N -0.231 5.231 8 C -0.124 4.124 9 C 0.058 3.942 10 C -0.551 4.551 11 H 0.082 0.918 12 C -0.146 4.146 13 N -0.531 5.531 14 Si 0.727 3.273 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C 0.283 3.717 19 O -0.321 6.321 20 O -0.274 6.274 21 H 0.085 0.915 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.314 9.781 -2.757 15.208 hybrid contribution 0.324 -0.863 0.488 1.043 sum -10.990 8.919 -2.269 14.335 Atomic orbital electron populations 1.21878 0.92197 1.03599 1.02908 1.23650 0.95929 0.95204 0.83054 0.89155 1.23218 0.97495 1.00541 0.97456 1.23243 1.00096 0.95565 0.89728 0.86564 1.62622 1.05515 0.97564 1.57444 1.22431 0.92403 1.00711 0.96876 1.19957 0.84558 0.94567 0.95079 1.21139 1.07698 1.00029 1.26251 0.91768 1.25002 0.95823 0.98514 0.95254 1.69998 1.11708 1.37525 1.33916 0.86433 0.78050 0.83874 0.78988 1.19671 1.20968 1.21089 1.24621 0.79301 0.74515 0.93252 1.90752 1.39289 1.44369 1.57704 1.86990 1.36389 1.63396 1.40631 0.91519 0.90198 0.91318 0.88195 0.88604 0.92831 0.89710 0.96727 0.94993 0.96887 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.57 37.16 0.36 -0.93 16 2 C 0.08 0.88 4.17 -25.90 -0.11 0.78 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.15 -1.83 6.13 -25.12 -0.15 -1.98 16 5 C 0.03 0.45 3.11 -67.77 -0.21 0.24 16 6 H 0.12 2.00 8.08 -51.93 -0.42 1.58 16 7 N -0.51 -10.91 4.79 -236.41 -1.13 -12.05 16 8 C 0.02 0.47 8.78 60.06 0.53 1.00 16 9 C 0.18 4.95 4.17 -4.98 -0.02 4.93 16 10 C -0.51 -14.68 8.46 -34.44 -0.29 -14.97 16 11 H 0.06 1.79 7.12 -52.48 -0.37 1.41 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 14 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.45 8.94 6.32 36.31 0.23 9.17 16 19 O -0.44 -10.88 16.20 -18.41 -0.30 -11.18 16 20 O -0.36 -6.02 10.76 -38.46 -0.41 -6.44 16 21 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.10 1.21 5.56 -51.93 -0.29 0.93 16 25 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.84 5.96 -51.93 -0.31 0.53 16 27 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 28 H 0.01 0.30 7.07 -51.93 -0.37 -0.07 16 29 H 0.03 0.92 8.03 -51.93 -0.42 0.51 16 30 H 0.01 0.40 6.56 -51.93 -0.34 0.06 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 256.23 15.07 3.86 3.86 Total: -1.00 -33.83 256.23 -6.15 -39.98 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -4.12 Total: -4.09 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 0.23 Total: -0.24 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.40 Total: -38.81 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.71 Total: -17.62 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.83 -6.15 -39.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306286766.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.832 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds