Wall clock time and date at job start Thu Apr 9 2020 14:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.39223 * 2 1 4 4 C 1.54576 * 110.54674 * 237.50322 * 2 1 3 5 5 C 1.54490 * 102.14666 * 214.35604 * 4 2 1 6 6 H 1.08995 * 110.36548 * 256.50853 * 5 4 2 7 7 N 1.46901 * 110.36611 * 134.18337 * 5 4 2 8 8 C 1.46899 * 110.99815 * 302.09745 * 7 5 4 9 9 C 1.46898 * 111.00038 * 178.14513 * 7 5 4 10 10 C 1.50696 * 109.47261 * 189.99908 * 9 7 5 11 11 H 1.08007 * 120.00292 * 0.02562 * 10 9 7 12 12 C 1.37874 * 120.00130 * 180.02562 * 10 9 7 13 13 N 1.31512 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00148 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46851 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47062 * 119.99736 * 14 12 10 17 17 H 1.48495 * 109.47117 * 239.99880 * 14 12 10 18 18 C 1.51330 * 104.82289 * 15.34869 * 5 4 2 19 19 O 1.20827 * 125.08797 * 182.35293 * 18 5 4 20 20 O 1.34059 * 109.81174 * 2.30877 * 18 5 4 21 21 H 1.08997 * 109.47177 * 300.70235 * 1 2 3 22 22 H 1.08998 * 109.47237 * 60.70472 * 1 2 3 23 23 H 1.09000 * 109.46748 * 180.70044 * 1 2 3 24 24 H 1.09002 * 110.86557 * 332.52612 * 4 2 1 25 25 H 1.09001 * 110.86582 * 96.19094 * 4 2 1 26 26 H 1.09005 * 109.47416 * 60.00272 * 8 7 5 27 27 H 1.09006 * 109.47011 * 179.97438 * 8 7 5 28 28 H 1.08992 * 109.47648 * 299.99851 * 8 7 5 29 29 H 1.08994 * 109.47115 * 310.00148 * 9 7 5 30 30 H 1.09001 * 109.46830 * 70.00195 * 9 7 5 31 31 H 0.96999 * 120.00217 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0725 -0.7776 -1.2208 5 6 3.3541 -1.4249 -0.6505 6 1 4.2369 -0.8875 -0.9968 7 7 3.4296 -2.8392 -1.0404 8 6 2.2474 -3.5772 -0.5758 9 6 4.6655 -3.4575 -0.5422 10 6 4.8290 -4.8222 -1.1601 11 1 4.0891 -5.1931 -1.8540 12 6 5.9233 -5.5974 -0.8398 13 7 6.8241 -5.1461 0.0055 14 14 6.1264 -7.2888 -1.6063 15 1 4.9846 -7.5601 -2.5163 16 1 7.3953 -7.3341 -2.3763 17 1 6.1602 -8.3168 -0.5352 18 6 3.2161 -1.2992 0.8512 19 8 4.0431 -1.6554 1.6569 20 8 2.0394 -0.7326 1.1535 21 1 -0.3633 0.5247 0.8836 22 1 -0.3633 0.5028 -0.8962 23 1 -0.3633 -1.0276 0.0126 24 1 1.3626 -1.5397 -1.5425 25 1 2.3117 -0.0982 -2.0389 26 1 1.3506 -3.1408 -1.0156 27 1 2.3288 -4.6213 -0.8782 28 1 2.1854 -3.5171 0.5107 29 1 5.5177 -2.8329 -0.8099 30 1 4.6120 -3.5537 0.5422 31 1 7.5941 -5.6913 0.2306 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306286766.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:39 Heat of formation + Delta-G solvation = -99.902818 kcal Electronic energy + Delta-G solvation = -14796.500543 eV Core-core repulsion = 12270.303750 eV Total energy + Delta-G solvation = -2526.196794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.32739 -38.78577 -37.98838 -34.85831 -33.52169 -31.08946 -29.10750 -27.18351 -25.24767 -23.54220 -22.69281 -21.15671 -18.73104 -18.37309 -17.90832 -17.09081 -16.78065 -16.06980 -15.71023 -15.14264 -14.75130 -14.39501 -13.97858 -13.72581 -13.39689 -13.33199 -12.92727 -12.80230 -12.77340 -12.47037 -12.36948 -12.08163 -11.73265 -11.69357 -11.40398 -11.23321 -10.65994 -9.22777 -8.21959 -6.34776 0.93325 1.40172 1.41615 1.55383 2.16658 2.38380 2.78807 3.10188 3.29385 3.40680 3.80465 3.96860 4.23394 4.26836 4.37355 4.52197 4.78310 4.84847 4.89775 5.01074 5.10331 5.19078 5.23609 5.31175 5.57870 5.77544 5.94360 6.04863 6.32675 6.44939 6.82037 7.34979 8.89981 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056682 B = 0.007963 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.867495 B = 3515.631573 C = 3773.219062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.119 0.881 4 C -0.131 4.131 5 C 0.017 3.983 6 H 0.117 0.883 7 N -0.506 5.506 8 C 0.028 3.972 9 C 0.201 3.799 10 C -0.527 4.527 11 H 0.072 0.928 12 C -0.004 4.004 13 N -0.937 5.937 14 Si 0.978 3.022 15 H -0.256 1.256 16 H -0.276 1.276 17 H -0.282 1.282 18 C 0.447 3.553 19 O -0.505 6.505 20 O -0.367 6.367 21 H 0.070 0.930 22 H 0.115 0.885 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.135 0.865 26 H 0.103 0.897 27 H 0.069 0.931 28 H -0.007 1.007 29 H 0.001 0.999 30 H -0.031 1.031 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.039 10.557 -5.094 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 H 0.137 0.863 4 C -0.168 4.168 5 C -0.094 4.094 6 H 0.135 0.865 7 N -0.230 5.230 8 C -0.119 4.119 9 C 0.074 3.926 10 C -0.565 4.565 11 H 0.091 0.909 12 C -0.202 4.202 13 N -0.578 5.578 14 Si 0.801 3.199 15 H -0.180 1.180 16 H -0.202 1.202 17 H -0.207 1.207 18 C 0.287 3.713 19 O -0.391 6.391 20 O -0.284 6.284 21 H 0.089 0.911 22 H 0.134 0.866 23 H 0.080 0.920 24 H 0.126 0.874 25 H 0.153 0.847 26 H 0.121 0.879 27 H 0.088 0.912 28 H 0.011 0.989 29 H 0.019 0.981 30 H -0.013 1.013 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.623 10.333 -4.949 17.801 hybrid contribution 0.929 -0.894 1.170 1.741 sum -12.694 9.439 -3.779 16.264 Atomic orbital electron populations 1.21952 0.89516 1.03803 1.04919 1.24247 0.97928 0.95679 0.80602 0.86293 1.23292 0.94012 1.00977 0.98558 1.23502 1.03620 0.93600 0.88712 0.86515 1.62495 1.03963 0.99482 1.57082 1.22464 0.93379 1.00289 0.95813 1.19501 0.86394 0.94310 0.92353 1.21515 1.07968 1.00796 1.26269 0.90946 1.26067 0.95326 1.03238 0.95586 1.70162 1.12491 1.39522 1.35578 0.85214 0.78594 0.77885 0.78167 1.17965 1.20184 1.20742 1.24960 0.79360 0.73250 0.93705 1.90712 1.41895 1.47091 1.59357 1.86977 1.34627 1.63149 1.43639 0.91108 0.86628 0.91993 0.87434 0.84673 0.87860 0.91182 0.98880 0.98066 1.01278 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.57 71.98 0.69 -1.17 16 2 C 0.07 1.34 4.17 31.13 0.13 1.47 16 3 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.13 -2.69 6.13 31.64 0.19 -2.50 16 5 C 0.02 0.58 3.11 44.88 0.14 0.72 16 6 H 0.12 4.02 8.08 -2.39 -0.02 4.00 16 7 N -0.51 -21.85 4.79 -901.87 -4.32 -26.17 16 8 C 0.03 1.09 8.78 127.69 1.12 2.21 16 9 C 0.20 11.37 4.17 85.56 0.36 11.73 16 10 C -0.53 -30.81 8.46 25.60 0.22 -30.59 16 11 H 0.07 4.02 7.12 -2.91 -0.02 4.00 16 12 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 13 N -0.94 -59.78 13.29 21.45 0.28 -59.49 16 14 Si 0.98 45.30 29.54 68.60 2.03 47.32 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 C 0.45 18.36 6.32 71.44 0.45 18.81 16 19 O -0.51 -26.64 16.20 21.64 0.35 -26.29 16 20 O -0.37 -12.05 10.76 -50.11 -0.54 -12.59 16 21 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.11 2.08 5.56 -2.39 -0.01 2.07 16 25 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.10 2.92 5.96 -2.38 -0.01 2.90 16 27 H 0.07 2.89 6.76 -2.38 -0.02 2.87 16 28 H -0.01 -0.32 7.07 -2.39 -0.02 -0.34 16 29 H 0.00 0.07 8.03 -2.39 -0.02 0.06 16 30 H -0.03 -1.99 6.56 -2.39 -0.02 -2.00 16 31 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -78.79 256.23 2.68 -76.11 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.12 Total: 0.24 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 3.76 Total: 0.88 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -4.03 Total: -85.67 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.19 Total: -38.89 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -78.79 2.68 -76.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306286766.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.790 kcal (2) G-P(sol) polarization free energy of solvation -78.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds