Wall clock time and date at job start Thu Apr 9 2020 14:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.52417 * 2 1 4 4 C 1.53047 * 109.49411 * 239.92100 * 2 1 3 5 5 C 1.53036 * 109.53670 * 178.68363 * 4 2 1 6 6 H 1.09005 * 109.49817 * 301.41283 * 5 4 2 7 7 O 1.42897 * 109.52619 * 181.33483 * 5 4 2 8 8 C 1.53192 * 109.31343 * 61.36458 * 5 4 2 9 9 N 1.46926 * 108.77814 * 305.36602 * 8 5 4 10 10 C 1.34777 * 120.63207 * 233.59055 * 9 8 5 11 11 O 1.21687 * 119.99852 * 174.77977 * 10 9 8 12 12 C 1.46372 * 119.99914 * 354.77421 * 10 9 8 13 13 H 1.08002 * 119.99903 * 5.01261 * 12 10 9 14 14 C 1.40044 * 120.00197 * 185.00929 * 12 10 9 15 15 N 1.30672 * 119.99993 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00312 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46619 * 60.00365 * 16 14 12 18 18 H 1.48498 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47203 * 300.00473 * 16 14 12 20 20 C 1.46923 * 118.73896 * 53.60350 * 9 8 5 21 21 H 1.09002 * 109.46679 * 299.91606 * 1 2 3 22 22 H 1.09005 * 109.47064 * 59.91201 * 1 2 3 23 23 H 1.08993 * 109.47222 * 179.91596 * 1 2 3 24 24 H 1.08994 * 109.46013 * 298.70554 * 4 2 1 25 25 H 1.09000 * 109.45878 * 58.66183 * 4 2 1 26 26 H 0.96696 * 114.00425 * 180.15079 * 7 5 4 27 27 H 1.08998 * 109.58849 * 185.57926 * 8 5 4 28 28 H 1.08997 * 109.70311 * 65.22317 * 8 5 4 29 29 H 0.96995 * 120.00218 * 180.02562 * 15 14 12 30 30 H 1.08999 * 109.59185 * 186.60834 * 20 9 8 31 31 H 1.09004 * 109.70355 * 66.24769 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2485 5 6 3.5708 -0.6951 -1.2662 6 1 3.9159 0.3389 -1.2542 7 8 4.0467 -1.3430 -2.4475 8 6 4.1053 -1.4268 -0.0310 9 7 3.5046 -0.8293 1.1695 10 6 4.2812 -0.3865 2.1781 11 8 3.7791 0.1917 3.1238 12 6 5.7285 -0.6014 2.1361 13 1 6.1838 -1.0417 1.2613 14 6 6.5227 -0.2360 3.2302 15 7 5.9717 0.2962 4.2887 16 14 8.3696 -0.5109 3.1769 17 1 8.9506 0.2501 2.0417 18 1 8.9766 -0.0436 4.4490 19 1 8.6498 -1.9581 2.9976 20 6 2.0414 -0.7239 1.2495 21 1 -0.3633 0.5125 0.8908 22 1 -0.3633 0.5152 -0.8892 23 1 -0.3633 -1.0276 -0.0015 24 1 1.6966 -1.7572 -1.2354 25 1 1.6581 -0.2245 -2.1390 26 1 5.0105 -1.3642 -2.5234 27 1 5.1895 -1.3247 0.0136 28 1 3.8396 -2.4825 -0.0856 29 1 6.5218 0.5497 5.0464 30 1 1.7638 -0.1580 2.1388 31 1 1.6033 -1.7208 1.2992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306885202.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:06 Heat of formation + Delta-G solvation = -98.037491 kcal Electronic energy + Delta-G solvation = -14775.429920 eV Core-core repulsion = 12249.314013 eV Total energy + Delta-G solvation = -2526.115907 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.00621 -36.64409 -35.26054 -32.75292 -32.46666 -29.61728 -27.23160 -25.75687 -24.15967 -21.53638 -20.18663 -18.93342 -16.79260 -16.52515 -15.82826 -14.79090 -14.71815 -14.28844 -14.09999 -13.16384 -13.07335 -12.71336 -12.30754 -11.79763 -11.69019 -11.59764 -11.44297 -11.05917 -10.97331 -10.59688 -10.40166 -10.29602 -10.13514 -9.86726 -9.74290 -8.88942 -7.62871 -7.25086 -6.24050 -4.69940 3.11873 3.17168 3.18611 4.03090 4.27313 4.51120 4.67066 5.14552 5.20793 5.37278 5.44600 5.61319 5.72914 5.83656 5.92988 5.97914 6.07127 6.13932 6.33070 6.38135 6.44698 6.47808 6.62733 6.77535 7.40128 7.52627 7.89146 8.08412 8.30103 8.97058 9.37820 10.52788 10.71156 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037107 B = 0.009790 C = 0.007975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.402863 B = 2859.334828 C = 3510.295510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.072 0.928 4 C -0.100 4.100 5 C 0.087 3.913 6 H 0.056 0.944 7 O -0.573 6.573 8 C 0.095 3.905 9 N -0.639 5.639 10 C 0.559 3.441 11 O -0.576 6.576 12 C -0.546 4.546 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.123 3.877 21 H 0.057 0.943 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.377 0.623 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.270 0.730 30 H 0.086 0.914 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -2.228 -9.371 10.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 H 0.090 0.910 4 C -0.138 4.138 5 C 0.027 3.973 6 H 0.074 0.926 7 O -0.377 6.377 8 C -0.030 4.030 9 N -0.379 5.379 10 C 0.365 3.635 11 O -0.459 6.459 12 C -0.582 4.582 13 H 0.089 0.911 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.731 3.269 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.192 1.192 20 C -0.001 4.001 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.462 -1.898 -8.734 9.990 hybrid contribution 1.547 -0.124 -0.026 1.553 sum -2.914 -2.023 -8.760 9.451 Atomic orbital electron populations 1.21727 0.94905 1.01641 1.01541 1.21511 0.95346 1.00336 0.95333 0.90970 1.21467 0.93470 1.01158 0.97696 1.22295 0.94944 0.95606 0.84461 0.92579 1.86432 1.26696 1.81615 1.42997 1.22071 0.99927 0.95967 0.85052 1.48113 1.04297 1.66343 1.19111 1.18255 0.87270 0.77919 0.80039 1.90591 1.75181 1.45541 1.34544 1.20931 0.90443 1.44068 1.02804 0.91054 1.25730 1.00038 0.92839 0.94633 1.69997 1.36457 1.29409 1.03693 0.86445 0.82821 0.79398 0.78192 1.19246 1.20474 1.19231 1.21235 0.82916 0.98568 0.97396 0.92374 0.92924 0.92751 0.91646 0.92041 0.77634 0.88917 0.93288 0.91956 0.89605 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.20 37.16 0.34 -1.48 16 2 C -0.11 -1.71 2.87 -90.49 -0.26 -1.97 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.10 -1.54 4.82 -26.69 -0.13 -1.67 16 5 C 0.09 1.42 3.62 -26.61 -0.10 1.33 16 6 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 7 O -0.57 -8.42 13.32 -35.23 -0.47 -8.89 16 8 C 0.10 1.80 5.94 -3.71 -0.02 1.78 16 9 N -0.64 -14.68 2.97 -174.43 -0.52 -15.20 16 10 C 0.56 15.92 7.62 -12.99 -0.10 15.82 16 11 O -0.58 -18.62 14.46 5.20 0.08 -18.55 16 12 C -0.55 -15.15 8.86 -35.63 -0.32 -15.47 16 13 H 0.07 1.79 5.69 -52.49 -0.30 1.49 16 14 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 15 N -0.77 -22.82 11.84 55.55 0.66 -22.16 16 16 Si 0.91 19.80 29.56 -169.99 -5.02 14.77 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 C 0.12 2.45 5.73 -3.71 -0.02 2.42 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.38 4.05 9.08 45.56 0.41 4.46 16 27 H 0.09 1.79 5.37 -51.93 -0.28 1.51 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 30 H 0.09 1.91 6.99 -51.93 -0.36 1.54 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 256.33 15.07 3.86 3.86 Total: -1.00 -33.69 256.33 -5.58 -39.27 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.47 Total: 3.80 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -0.70 Total: 3.09 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.14 Total: -37.36 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.39 Total: -27.44 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.69 -5.58 -39.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306885202.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.765 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds