Wall clock time and date at job start Thu Apr 9 2020 14:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.52417 * 2 1 4 4 C 1.53047 * 109.49411 * 239.92100 * 2 1 3 5 5 C 1.53036 * 109.53670 * 178.68363 * 4 2 1 6 6 H 1.09005 * 109.49817 * 301.41283 * 5 4 2 7 7 O 1.42897 * 109.52619 * 181.33483 * 5 4 2 8 8 C 1.53192 * 109.31343 * 61.36458 * 5 4 2 9 9 N 1.46926 * 108.77814 * 305.36602 * 8 5 4 10 10 C 1.34777 * 120.63207 * 233.59055 * 9 8 5 11 11 O 1.21687 * 119.99852 * 174.77977 * 10 9 8 12 12 C 1.46372 * 119.99914 * 354.77421 * 10 9 8 13 13 H 1.08002 * 119.99903 * 5.01261 * 12 10 9 14 14 C 1.40044 * 120.00197 * 185.00929 * 12 10 9 15 15 N 1.30672 * 119.99993 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00312 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46619 * 60.00365 * 16 14 12 18 18 H 1.48498 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47203 * 300.00473 * 16 14 12 20 20 C 1.46923 * 118.73896 * 53.60350 * 9 8 5 21 21 H 1.09002 * 109.46679 * 299.91606 * 1 2 3 22 22 H 1.09005 * 109.47064 * 59.91201 * 1 2 3 23 23 H 1.08993 * 109.47222 * 179.91596 * 1 2 3 24 24 H 1.08994 * 109.46013 * 298.70554 * 4 2 1 25 25 H 1.09000 * 109.45878 * 58.66183 * 4 2 1 26 26 H 0.96696 * 114.00425 * 180.15079 * 7 5 4 27 27 H 1.08998 * 109.58849 * 185.57926 * 8 5 4 28 28 H 1.08997 * 109.70311 * 65.22317 * 8 5 4 29 29 H 0.96995 * 120.00218 * 180.02562 * 15 14 12 30 30 H 1.08999 * 109.59185 * 186.60834 * 20 9 8 31 31 H 1.09004 * 109.70355 * 66.24769 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2485 5 6 3.5708 -0.6951 -1.2662 6 1 3.9159 0.3389 -1.2542 7 8 4.0467 -1.3430 -2.4475 8 6 4.1053 -1.4268 -0.0310 9 7 3.5046 -0.8293 1.1695 10 6 4.2812 -0.3865 2.1781 11 8 3.7791 0.1917 3.1238 12 6 5.7285 -0.6014 2.1361 13 1 6.1838 -1.0417 1.2613 14 6 6.5227 -0.2360 3.2302 15 7 5.9717 0.2962 4.2887 16 14 8.3696 -0.5109 3.1769 17 1 8.9506 0.2501 2.0417 18 1 8.9766 -0.0436 4.4490 19 1 8.6498 -1.9581 2.9976 20 6 2.0414 -0.7239 1.2495 21 1 -0.3633 0.5125 0.8908 22 1 -0.3633 0.5152 -0.8892 23 1 -0.3633 -1.0276 -0.0015 24 1 1.6966 -1.7572 -1.2354 25 1 1.6581 -0.2245 -2.1390 26 1 5.0105 -1.3642 -2.5234 27 1 5.1895 -1.3247 0.0136 28 1 3.8396 -2.4825 -0.0856 29 1 6.5218 0.5497 5.0464 30 1 1.7638 -0.1580 2.1388 31 1 1.6033 -1.7208 1.2992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306885202.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:06 Heat of formation + Delta-G solvation = -124.204764 kcal Electronic energy + Delta-G solvation = -14776.564618 eV Core-core repulsion = 12249.314013 eV Total energy + Delta-G solvation = -2527.250605 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.61348 -38.41832 -36.69478 -34.68821 -34.32965 -31.02602 -29.05645 -27.29670 -25.88298 -22.89787 -21.87108 -20.58671 -18.47808 -18.02667 -17.79268 -16.51369 -16.23773 -15.80108 -15.64157 -14.87555 -14.65353 -14.18402 -13.81494 -13.47314 -13.32052 -13.01886 -12.79634 -12.71332 -12.59548 -12.33340 -12.05815 -11.77203 -11.62032 -11.40394 -11.07956 -10.92705 -9.81282 -9.11080 -8.31245 -6.87228 1.39077 1.42357 1.54153 2.21978 2.42757 2.71378 3.30530 3.53018 3.86875 3.93410 4.01926 4.12426 4.28042 4.54632 4.59142 4.67876 4.79082 4.89318 4.95238 4.95342 5.09969 5.20506 5.29108 5.35948 5.44855 5.71300 6.08631 6.35483 6.84918 6.85737 7.37059 8.42987 8.64502 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037107 B = 0.009790 C = 0.007975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.402863 B = 2859.334828 C = 3510.295510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 H 0.053 0.947 4 C -0.096 4.096 5 C 0.098 3.902 6 H 0.045 0.955 7 O -0.570 6.570 8 C 0.093 3.907 9 N -0.643 5.643 10 C 0.539 3.461 11 O -0.631 6.631 12 C -0.570 4.570 13 H 0.095 0.905 14 C 0.028 3.972 15 N -0.823 5.823 16 Si 0.996 3.004 17 H -0.252 1.252 18 H -0.276 1.276 19 H -0.253 1.253 20 C 0.118 3.882 21 H 0.053 0.947 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.395 0.605 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.275 0.725 30 H 0.051 0.949 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 -3.210 -11.616 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 H 0.072 0.928 4 C -0.134 4.134 5 C 0.038 3.962 6 H 0.063 0.937 7 O -0.377 6.377 8 C -0.031 4.031 9 N -0.381 5.381 10 C 0.346 3.654 11 O -0.518 6.518 12 C -0.606 4.606 13 H 0.113 0.887 14 C -0.187 4.187 15 N -0.452 5.452 16 Si 0.815 3.185 17 H -0.176 1.176 18 H -0.200 1.200 19 H -0.177 1.177 20 C -0.005 4.005 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.245 0.755 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.780 -2.910 -11.052 12.037 hybrid contribution 1.277 0.144 0.630 1.432 sum -2.502 -2.766 -10.422 11.069 Atomic orbital electron populations 1.21692 0.92046 1.02894 1.02540 1.21408 0.97637 0.98719 0.93861 0.92829 1.21451 0.92526 1.01723 0.97656 1.22034 0.95766 0.94612 0.83783 0.93654 1.86413 1.28630 1.81183 1.41517 1.22248 0.99588 0.96688 0.84577 1.47984 1.05410 1.65444 1.19222 1.18704 0.88449 0.77798 0.80497 1.90539 1.76294 1.48003 1.37012 1.21478 0.90711 1.44369 1.04073 0.88712 1.27026 1.06394 0.91668 0.93654 1.70182 1.39210 1.30897 1.04909 0.85090 0.74598 0.80074 0.78697 1.17600 1.20039 1.17671 1.21407 0.81432 0.99475 0.98176 0.92752 0.90613 0.91364 0.90757 0.89945 0.75544 0.89526 0.92093 0.91553 0.93033 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.20 71.98 0.66 -2.51 16 2 C -0.10 -3.02 2.87 -10.71 -0.03 -3.05 16 3 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.10 -2.68 4.82 30.62 0.15 -2.54 16 5 C 0.10 3.02 3.62 30.67 0.11 3.13 16 6 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 7 O -0.57 -14.92 13.32 -148.98 -1.99 -16.90 16 8 C 0.09 3.41 5.94 86.36 0.51 3.93 16 9 N -0.64 -29.95 2.97 -824.00 -2.45 -32.40 16 10 C 0.54 31.78 7.62 86.36 0.66 32.44 16 11 O -0.63 -43.03 14.46 -4.31 -0.06 -43.09 16 12 C -0.57 -32.04 8.86 24.83 0.22 -31.82 16 13 H 0.10 4.68 5.69 -2.91 -0.02 4.67 16 14 C 0.03 1.54 5.50 85.30 0.47 2.01 16 15 N -0.82 -50.54 11.84 21.83 0.26 -50.28 16 16 Si 1.00 40.34 29.56 68.60 2.03 42.37 16 17 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 18 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 19 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 20 C 0.12 4.77 5.73 86.36 0.49 5.27 16 21 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.39 7.22 9.08 -74.06 -0.67 6.54 16 27 H 0.09 3.25 5.37 -2.39 -0.01 3.23 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 30 H 0.05 2.41 6.99 -2.39 -0.02 2.40 16 31 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -75.67 256.33 1.49 -74.18 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.46 Total: 19.27 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 3.24 Total: 6.86 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -2.19 Total: -82.67 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -2.05 Total: -60.00 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -75.67 1.49 -74.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306885202.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.029 kcal (2) G-P(sol) polarization free energy of solvation -75.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds