Wall clock time and date at job start Thu Apr 9 2020 14:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.87222 * 2 1 4 4 O 1.43749 * 109.87535 * 121.15927 * 2 1 3 5 5 C 1.44392 * 106.97028 * 145.93631 * 4 2 1 6 6 C 1.54991 * 103.49012 * 319.93666 * 5 4 2 7 7 C 1.54096 * 109.87660 * 238.98959 * 2 1 3 8 8 C 1.53000 * 110.48839 * 357.22336 * 7 2 1 9 9 C 1.50703 * 110.60025 * 119.81875 * 7 2 1 10 10 O 1.21291 * 119.99944 * 356.28128 * 9 7 2 11 11 N 1.34773 * 119.99985 * 176.29213 * 9 7 2 12 12 C 1.37102 * 120.00046 * 179.97438 * 11 9 7 13 13 H 1.08005 * 119.99860 * 359.97438 * 12 11 9 14 14 C 1.38943 * 120.00102 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00464 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99757 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47310 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47143 * 120.00466 * 16 14 12 19 19 H 1.48504 * 109.47057 * 239.99934 * 16 14 12 20 20 H 1.09000 * 109.47357 * 181.01092 * 1 2 3 21 21 H 1.09002 * 109.47272 * 301.00542 * 1 2 3 22 22 H 1.08995 * 109.47447 * 61.01056 * 1 2 3 23 23 H 1.09000 * 110.61094 * 201.43672 * 5 4 2 24 24 H 1.08998 * 110.61686 * 78.44159 * 5 4 2 25 25 H 1.08996 * 110.90945 * 278.82529 * 6 5 4 26 26 H 1.09004 * 110.90588 * 155.21794 * 6 5 4 27 27 H 1.08992 * 109.47415 * 303.77556 * 8 7 2 28 28 H 1.08996 * 109.47049 * 63.78279 * 8 7 2 29 29 H 1.09009 * 109.47011 * 183.78040 * 8 7 2 30 30 H 0.96996 * 120.00381 * 359.97438 * 11 9 7 31 31 H 0.96993 * 120.00601 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0187 -0.6995 1.1568 5 6 3.2379 -1.3652 0.7629 6 6 2.9194 -1.8907 -0.6600 7 6 2.0539 -0.7466 -1.2420 8 6 0.8897 -1.3163 -2.0551 9 6 2.8939 0.1683 -2.0956 10 8 3.0151 1.3370 -1.7943 11 7 3.5101 -0.3119 -3.1937 12 6 4.2738 0.5206 -3.9705 13 1 4.3813 1.5613 -3.7026 14 6 4.9095 0.0254 -5.1024 15 7 4.7784 -1.2408 -5.4288 16 14 5.9495 1.1599 -6.1611 17 1 5.9359 2.5274 -5.5825 18 1 7.3454 0.6550 -6.2044 19 1 5.3944 1.1988 -7.5380 20 1 -0.3634 -1.0275 0.0181 21 1 -0.3634 0.5294 0.8808 22 1 -0.3634 0.4980 -0.8988 23 1 3.4583 -2.1928 1.4373 24 1 4.0685 -0.6600 0.7347 25 1 2.3539 -2.8213 -0.6135 26 1 3.8331 -2.0208 -1.2401 27 1 0.2824 -1.9596 -1.4184 28 1 0.2774 -0.4986 -2.4351 29 1 1.2801 -1.8968 -2.8911 30 1 3.4133 -1.2465 -3.4346 31 1 5.2219 -1.5864 -6.2191 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307564093.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:15 Heat of formation + Delta-G solvation = -114.612378 kcal Electronic energy + Delta-G solvation = -14931.692238 eV Core-core repulsion = 12404.857590 eV Total energy + Delta-G solvation = -2526.834648 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.61812 -39.17345 -36.07255 -34.92671 -33.32505 -32.29048 -28.63445 -27.27607 -26.11315 -23.46613 -22.41562 -20.26747 -19.72915 -18.04903 -17.09819 -16.79711 -16.25503 -16.11652 -15.60844 -15.26621 -14.91305 -14.66186 -13.72974 -13.61773 -13.45837 -13.12348 -12.91624 -12.58107 -12.49207 -12.25406 -12.15958 -12.10471 -11.81434 -11.61835 -11.55965 -10.66674 -10.25372 -10.07135 -8.51509 -6.00980 1.33228 1.39739 1.53661 1.95630 2.26058 2.85524 3.08942 3.13352 3.54003 3.80146 3.91035 4.17711 4.28636 4.33151 4.46734 4.63681 4.64729 4.75235 4.85549 4.88505 5.00200 5.09506 5.10714 5.22009 5.37037 5.40225 5.87210 5.98460 6.52407 7.06050 7.48601 8.03026 8.65700 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049604 B = 0.008434 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.336182 B = 3319.106130 C = 3355.069544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.053 0.947 4 O -0.383 6.383 5 C 0.046 3.954 6 C -0.139 4.139 7 C -0.101 4.101 8 C -0.129 4.129 9 C 0.448 3.552 10 O -0.636 6.636 11 N -0.560 5.560 12 C -0.339 4.339 13 H 0.077 0.923 14 C -0.008 4.008 15 N -0.915 5.915 16 Si 0.992 3.008 17 H -0.275 1.275 18 H -0.269 1.269 19 H -0.269 1.269 20 H 0.085 0.915 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.127 0.873 24 H 0.038 0.962 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.397 0.603 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 -5.060 6.377 9.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.024 3.976 3 H 0.071 0.929 4 O -0.303 6.303 5 C -0.030 4.030 6 C -0.177 4.177 7 C -0.104 4.104 8 C -0.186 4.186 9 C 0.235 3.765 10 O -0.524 6.524 11 N -0.195 5.195 12 C -0.468 4.468 13 H 0.095 0.905 14 C -0.209 4.209 15 N -0.555 5.555 16 Si 0.816 3.184 17 H -0.199 1.199 18 H -0.194 1.194 19 H -0.194 1.194 20 H 0.103 0.897 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.145 0.855 24 H 0.057 0.943 25 H 0.133 0.867 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.232 0.768 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.655 -4.412 6.597 9.745 hybrid contribution 0.902 0.344 -1.026 1.409 sum -4.753 -4.069 5.571 8.377 Atomic orbital electron populations 1.21971 0.91302 1.03873 1.02596 1.22696 0.96703 0.95267 0.82930 0.92883 1.88779 1.40023 1.67892 1.33614 1.23622 0.86962 0.96636 0.95811 1.23295 1.00041 0.98181 0.96195 1.21956 0.96922 0.95529 0.96017 1.21920 0.95925 1.01138 0.99588 1.20510 0.84017 0.88604 0.83331 1.90460 1.67957 1.20191 1.73792 1.41859 1.43061 1.12264 1.22298 1.19721 1.26521 0.94255 1.06297 0.90474 1.26034 0.98706 0.97970 0.98185 1.69663 1.44255 1.14069 1.27561 0.84885 0.77916 0.77830 0.77795 1.19947 1.19431 1.19380 0.89664 0.91576 0.90979 0.85486 0.94332 0.86656 0.91100 0.88144 0.92308 0.92343 0.76813 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 8.40 71.98 0.60 -3.19 16 2 C 0.08 2.91 3.67 30.96 0.11 3.02 16 3 H 0.05 2.31 6.46 -2.39 -0.02 2.29 16 4 O -0.38 -12.90 11.19 -148.98 -1.67 -14.57 16 5 C 0.05 1.38 7.72 72.66 0.56 1.95 16 6 C -0.14 -4.26 6.22 31.90 0.20 -4.06 16 7 C -0.10 -3.63 0.81 -51.94 -0.04 -3.67 16 8 C -0.13 -3.77 7.18 71.98 0.52 -3.25 16 9 C 0.45 21.89 6.42 87.66 0.56 22.46 16 10 O -0.64 -36.45 14.85 -3.06 -0.05 -36.50 16 11 N -0.56 -28.91 4.93 -306.99 -1.51 -30.43 16 12 C -0.34 -19.30 9.68 84.04 0.81 -18.49 16 13 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 14 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 15 N -0.92 -48.70 13.05 21.66 0.28 -48.41 16 16 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H 0.08 1.90 6.61 -2.39 -0.02 1.88 16 21 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.07 1.92 6.93 -2.39 -0.02 1.90 16 23 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.12 2.73 7.87 -2.39 -0.02 2.71 16 26 H 0.07 2.40 7.55 -2.38 -0.02 2.38 16 27 H 0.10 2.22 6.60 -2.39 -0.02 2.20 16 28 H 0.06 1.76 6.95 -2.39 -0.02 1.75 16 29 H 0.06 1.75 7.75 -2.38 -0.02 1.74 16 30 H 0.40 19.47 7.38 -92.71 -0.68 18.78 16 31 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -66.59 254.49 3.33 -63.25 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.45 Total: 27.19 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 3.80 Total: -5.23 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.23 Total: -78.84 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -1.71 Total: -51.06 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -66.59 3.33 -63.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307564093.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.360 kcal (2) G-P(sol) polarization free energy of solvation -66.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds