Wall clock time and date at job start Thu Apr 9 2020 14:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.99369 * 2 1 4 4 O 1.43746 * 109.88314 * 238.91229 * 2 1 3 5 5 C 1.44374 * 106.97451 * 214.06669 * 4 2 1 6 6 C 1.54994 * 103.49540 * 40.05894 * 5 4 2 7 7 C 1.54111 * 109.87651 * 121.08011 * 2 1 3 8 8 C 1.52999 * 110.59980 * 240.18961 * 7 2 1 9 9 C 1.50695 * 110.48556 * 2.77936 * 7 2 1 10 10 O 1.21296 * 120.00040 * 107.86412 * 9 7 2 11 11 N 1.34776 * 120.00287 * 287.86465 * 9 7 2 12 12 C 1.37097 * 120.00107 * 180.02562 * 11 9 7 13 13 H 1.07998 * 120.00043 * 0.02562 * 12 11 9 14 14 C 1.38952 * 119.99784 * 180.02562 * 12 11 9 15 15 N 1.31410 * 120.00113 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00038 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47232 * 59.99652 * 16 14 12 18 18 H 1.48504 * 109.46916 * 300.00172 * 16 14 12 19 19 H 1.48496 * 109.47603 * 179.97438 * 16 14 12 20 20 H 1.08994 * 109.47481 * 304.63658 * 1 2 3 21 21 H 1.09007 * 109.47150 * 64.63793 * 1 2 3 22 22 H 1.09003 * 109.47492 * 184.63194 * 1 2 3 23 23 H 1.09005 * 110.61809 * 281.55771 * 5 4 2 24 24 H 1.09001 * 110.62065 * 158.56170 * 5 4 2 25 25 H 1.09004 * 110.91046 * 204.77809 * 6 5 4 26 26 H 1.08995 * 110.90743 * 81.17574 * 6 5 4 27 27 H 1.09001 * 109.47065 * 181.92031 * 8 7 2 28 28 H 1.09005 * 109.46990 * 301.92097 * 8 7 2 29 29 H 1.09000 * 109.47486 * 61.91938 * 8 7 2 30 30 H 0.96999 * 119.99999 * 0.02562 * 11 9 7 31 31 H 0.97000 * 120.00247 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0189 -0.6980 -1.1576 5 6 3.2379 -1.3642 -0.7645 6 6 2.9195 -1.8914 0.6578 7 6 2.0539 -0.7482 1.2412 8 6 2.9065 0.1797 2.1090 9 6 0.9073 -1.3103 2.0413 10 8 0.6999 -2.5054 2.0467 11 7 0.1120 -0.4852 2.7507 12 6 -0.9309 -0.9967 3.4789 13 1 -1.1149 -2.0609 3.4844 14 6 -1.7510 -0.1459 4.2099 15 7 -1.5267 1.1489 4.2035 16 14 -3.1716 -0.8429 5.2027 17 1 -2.6478 -1.7943 6.2156 18 1 -4.1086 -1.5525 4.2951 19 1 -3.8872 0.2637 5.8872 20 1 -0.3634 0.5840 0.8455 21 1 -0.3634 0.4402 -0.9287 22 1 -0.3634 -1.0243 0.0830 23 1 4.0685 -0.6589 -0.7354 24 1 3.4585 -2.1909 -1.4398 25 1 3.8331 -2.0224 1.2377 26 1 2.3539 -2.8220 0.6101 27 1 3.2950 -0.3762 2.9623 28 1 3.7372 0.5672 1.5191 29 1 2.2948 1.0092 2.4638 30 1 0.2776 0.4705 2.7460 31 1 -0.7888 1.5108 3.6883 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307564095.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:17 Heat of formation + Delta-G solvation = -89.451339 kcal Electronic energy + Delta-G solvation = -15140.791896 eV Core-core repulsion = 12615.048312 eV Total energy + Delta-G solvation = -2525.743583 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.24812 -37.58628 -34.40901 -33.27415 -31.50215 -30.54052 -27.99876 -24.89383 -24.20560 -21.87454 -21.65872 -18.76955 -17.94165 -16.31215 -15.85938 -15.45607 -14.75914 -14.55729 -13.89463 -13.75827 -13.20666 -12.79862 -12.43624 -12.18993 -11.83243 -11.62825 -11.37650 -11.18218 -10.99411 -10.80126 -10.46953 -10.24351 -10.21213 -9.87525 -9.55996 -9.46089 -8.40100 -8.04048 -6.77150 -3.90207 3.29010 3.34069 3.54098 3.76437 4.10521 4.23629 4.66388 4.73163 5.07053 5.17932 5.31290 5.35543 5.45144 5.62328 5.67547 5.75335 5.79611 5.89252 6.11032 6.17305 6.23573 6.34786 6.40808 6.54608 6.74538 7.14537 7.77642 8.05848 8.56850 8.76427 9.44913 9.84072 10.65748 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051115 B = 0.009075 C = 0.008902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.652267 B = 3084.510220 C = 3144.770987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.090 3.910 3 H 0.069 0.931 4 O -0.374 6.374 5 C 0.048 3.952 6 C -0.135 4.135 7 C -0.109 4.109 8 C -0.135 4.135 9 C 0.465 3.535 10 O -0.585 6.585 11 N -0.569 5.569 12 C -0.383 4.383 13 H 0.099 0.901 14 C -0.008 4.008 15 N -0.899 5.899 16 Si 1.090 2.910 17 H -0.284 1.284 18 H -0.284 1.284 19 H -0.279 1.279 20 H 0.078 0.922 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.376 0.624 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.646 0.455 -5.612 9.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.087 0.913 4 O -0.294 6.294 5 C -0.029 4.029 6 C -0.173 4.173 7 C -0.113 4.113 8 C -0.193 4.193 9 C 0.252 3.748 10 O -0.470 6.470 11 N -0.207 5.207 12 C -0.512 4.512 13 H 0.116 0.884 14 C -0.211 4.211 15 N -0.538 5.538 16 Si 0.916 3.084 17 H -0.211 1.211 18 H -0.210 1.210 19 H -0.204 1.204 20 H 0.097 0.903 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.210 0.790 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.106 0.070 -4.769 7.748 hybrid contribution 1.580 0.186 -0.804 1.783 sum 7.686 0.256 -5.573 9.498 Atomic orbital electron populations 1.22151 0.93059 1.03965 1.02275 1.22737 0.95685 0.94654 0.83708 0.91303 1.88852 1.39622 1.67799 1.33099 1.23516 0.87587 0.96011 0.95793 1.23108 0.99513 0.99619 0.95066 1.22130 0.96269 0.96715 0.96150 1.21845 0.99151 0.98853 0.99426 1.19200 0.84846 0.86972 0.83819 1.90502 1.73762 1.15399 1.67341 1.42040 1.27485 1.08229 1.42915 1.20547 1.07274 0.96703 1.26657 0.88352 1.26487 1.02092 0.94323 0.98160 1.70912 1.30602 1.11915 1.40375 0.83147 0.74374 0.75076 0.75803 1.21053 1.20987 1.20390 0.90313 0.92449 0.91146 0.92652 0.89239 0.90523 0.88415 0.91801 0.92186 0.92059 0.78981 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 8.35 37.16 0.31 -2.71 16 2 C 0.09 1.58 3.73 -26.15 -0.10 1.48 16 3 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 4 O -0.37 -6.57 11.19 -35.23 -0.39 -6.96 16 5 C 0.05 0.68 7.72 38.21 0.29 0.97 16 6 C -0.14 -2.24 6.13 -24.72 -0.15 -2.39 16 7 C -0.11 -1.99 0.86 -154.13 -0.13 -2.12 16 8 C -0.14 -2.08 8.06 37.16 0.30 -1.78 16 9 C 0.47 11.04 4.53 -10.99 -0.05 10.99 16 10 O -0.59 -16.11 15.00 5.54 0.08 -16.03 16 11 N -0.57 -14.10 3.74 -10.96 -0.04 -14.14 16 12 C -0.38 -10.62 9.68 -14.93 -0.14 -10.76 16 13 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 14 C -0.01 -0.22 5.50 -17.47 -0.10 -0.31 16 15 N -0.90 -24.83 13.68 55.50 0.76 -24.07 16 16 Si 1.09 24.15 29.92 -169.99 -5.09 19.06 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H 0.08 1.58 6.16 -51.93 -0.32 1.26 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 22 H 0.07 1.56 7.11 -51.93 -0.37 1.19 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.08 1.09 7.86 -51.93 -0.41 0.69 16 26 H 0.10 1.88 6.81 -51.93 -0.35 1.53 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.94 7.21 -51.93 -0.37 0.56 16 30 H 0.38 8.69 4.97 -40.82 -0.20 8.49 16 31 H 0.26 6.92 6.78 -40.82 -0.28 6.64 16 LS Contribution 251.87 15.07 3.80 3.80 Total: -1.00 -31.50 251.87 -4.64 -36.14 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -3.99 Total: 8.83 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 0.23 Total: -6.63 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.72 Total: -38.21 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.31 Total: -22.99 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.09 Total: 19.06 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.50 -4.64 -36.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307564095.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.308 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds