Wall clock time and date at job start Thu Apr 9 2020 14:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.41900 * 2 1 4 4 O 1.44424 * 110.37633 * 122.30497 * 2 1 3 5 5 C 1.44425 * 105.27570 * 159.34298 * 4 2 1 6 6 C 1.54480 * 104.80330 * 319.49163 * 5 4 2 7 7 C 1.54482 * 110.37057 * 237.69007 * 2 1 3 8 8 C 1.52998 * 110.62772 * 98.48633 * 7 2 1 9 9 C 1.50697 * 110.51119 * 335.83238 * 7 2 1 10 10 O 1.21291 * 119.99745 * 118.93177 * 9 7 2 11 11 N 1.34771 * 120.00020 * 298.93027 * 9 7 2 12 12 C 1.37096 * 120.00250 * 179.72615 * 11 9 7 13 13 H 1.07995 * 119.99897 * 359.97438 * 12 11 9 14 14 C 1.38946 * 120.00332 * 180.02562 * 12 11 9 15 15 N 1.31415 * 120.00172 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00222 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46835 * 89.99913 * 16 14 12 18 18 H 1.48498 * 109.47125 * 210.00163 * 16 14 12 19 19 H 1.48502 * 109.46824 * 330.00218 * 16 14 12 20 20 H 1.09002 * 109.46940 * 188.74655 * 1 2 3 21 21 H 1.09002 * 109.47220 * 308.73871 * 1 2 3 22 22 H 1.08996 * 109.47650 * 68.74528 * 1 2 3 23 23 H 1.09001 * 110.37308 * 200.66247 * 5 4 2 24 24 H 1.08994 * 110.46430 * 78.36975 * 5 4 2 25 25 H 1.09008 * 110.51136 * 265.33425 * 6 5 4 26 26 H 1.08996 * 110.51265 * 142.62731 * 6 5 4 27 27 H 1.08998 * 109.47655 * 298.01483 * 8 7 2 28 28 H 1.08999 * 109.47261 * 58.01721 * 8 7 2 29 29 H 1.08998 * 109.47006 * 178.01109 * 8 7 2 30 30 H 0.97007 * 120.00274 * 0.02562 * 11 9 7 31 31 H 0.96998 * 120.00182 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7235 1.1443 5 6 3.3874 -1.0870 0.7995 6 6 3.3177 -1.5056 -0.6859 7 6 2.0677 -0.7741 -1.2240 8 6 2.4534 0.1921 -2.3458 9 6 1.0443 -1.7666 -1.7123 10 8 0.5976 -1.6738 -2.8362 11 7 0.6254 -2.7574 -0.9004 12 6 -0.3097 -3.6570 -1.3426 13 1 -0.7111 -3.5715 -2.3416 14 6 -0.7420 -4.6782 -0.5053 15 7 -0.2540 -4.7819 0.7104 16 14 -2.0168 -5.9036 -1.1078 17 1 -1.3323 -7.0552 -1.7483 18 1 -2.8235 -6.3844 0.0425 19 1 -2.9078 -5.2450 -2.0965 20 1 -0.3633 -1.0157 0.1563 21 1 -0.3634 0.6431 0.8016 22 1 -0.3634 0.3725 -0.9577 23 1 3.7242 -1.9221 1.4136 24 1 4.0539 -0.2335 0.9223 25 1 3.1955 -2.5853 -0.7731 26 1 4.2108 -1.1773 -1.2175 27 1 1.5701 0.7410 -2.6724 28 1 3.2024 0.8941 -1.9793 29 1 2.8626 -0.3704 -3.1850 30 1 0.9824 -2.8314 -0.0014 31 1 -0.5560 -5.4946 1.2951 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307564099.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:21 Heat of formation + Delta-G solvation = -114.186949 kcal Electronic energy + Delta-G solvation = -15218.146443 eV Core-core repulsion = 12691.330243 eV Total energy + Delta-G solvation = -2526.816200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62502 -39.05776 -36.06973 -34.45632 -33.19273 -32.49007 -29.01215 -27.39253 -25.31754 -23.24122 -22.97112 -20.30646 -19.58425 -17.79515 -17.14468 -16.62628 -16.51056 -15.89950 -15.75025 -15.40733 -14.61984 -13.91296 -13.75805 -13.62906 -13.34311 -13.12146 -12.94210 -12.92563 -12.46779 -12.41224 -12.20783 -12.13435 -11.81341 -11.55117 -11.41893 -10.69452 -10.22287 -9.98173 -8.46497 -5.96024 1.35305 1.38743 1.52137 1.99483 2.28012 2.93742 3.13539 3.19305 3.67338 3.78709 3.91163 4.15042 4.25513 4.40203 4.49440 4.53641 4.66377 4.77344 4.91103 4.93403 4.97488 5.06004 5.13863 5.28171 5.35882 5.39761 5.94599 5.99217 6.58525 7.10456 7.57477 8.11158 8.70394 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038209 B = 0.010730 C = 0.009781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.641137 B = 2608.997926 C = 2862.130196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 H 0.110 0.890 4 O -0.392 6.392 5 C 0.046 3.954 6 C -0.145 4.145 7 C -0.107 4.107 8 C -0.110 4.110 9 C 0.454 3.546 10 O -0.637 6.637 11 N -0.561 5.561 12 C -0.339 4.339 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.917 5.917 16 Si 0.993 3.007 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.272 1.272 20 H 0.043 0.957 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.051 0.949 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.397 0.603 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 8.090 1.717 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.128 0.872 4 O -0.311 6.311 5 C -0.030 4.030 6 C -0.183 4.183 7 C -0.111 4.111 8 C -0.167 4.167 9 C 0.242 3.758 10 O -0.526 6.526 11 N -0.197 5.197 12 C -0.468 4.468 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.557 5.557 16 Si 0.816 3.184 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.197 1.197 20 H 0.062 0.938 21 H 0.098 0.902 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.070 0.930 26 H 0.132 0.868 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.232 0.768 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.918 7.943 1.351 10.620 hybrid contribution -0.590 -0.986 -0.065 1.151 sum 6.327 6.957 1.286 9.492 Atomic orbital electron populations 1.21961 0.94566 1.02698 1.02305 1.23076 0.94645 0.95986 0.82867 0.87217 1.89165 1.28685 1.75018 1.38279 1.23597 0.84115 1.01417 0.93899 1.23142 0.97482 1.00089 0.97575 1.22215 0.94783 0.95720 0.98354 1.21520 1.01724 0.97534 0.95962 1.20458 0.85920 0.83917 0.85518 1.90460 1.62823 1.77057 1.22252 1.42006 1.37243 1.25162 1.15274 1.19711 1.18902 1.07755 1.00461 0.90355 1.26080 1.00294 0.99653 0.95198 1.69718 1.44377 1.34098 1.07518 0.84939 0.77725 0.77807 0.77922 1.19506 1.19474 1.19697 0.93768 0.90207 0.91812 0.88560 0.88538 0.92967 0.86759 0.93055 0.88352 0.93029 0.76776 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.90 8.54 71.98 0.61 -5.29 16 2 C 0.09 3.02 3.32 31.10 0.10 3.12 16 3 H 0.11 2.75 7.87 -2.39 -0.02 2.74 16 4 O -0.39 -13.65 10.92 -148.98 -1.63 -15.28 16 5 C 0.05 1.23 7.63 72.49 0.55 1.78 16 6 C -0.14 -4.40 6.06 31.61 0.19 -4.21 16 7 C -0.11 -3.84 0.83 -51.91 -0.04 -3.88 16 8 C -0.11 -3.28 7.60 71.98 0.55 -2.74 16 9 C 0.45 22.52 4.83 87.66 0.42 22.94 16 10 O -0.64 -36.37 15.67 -3.06 -0.05 -36.42 16 11 N -0.56 -30.32 3.47 -307.00 -1.06 -31.38 16 12 C -0.34 -19.95 9.68 84.04 0.81 -19.13 16 13 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 14 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 15 N -0.92 -51.51 13.05 21.66 0.28 -51.23 16 16 Si 0.99 44.11 29.55 68.60 2.03 46.14 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 20 H 0.04 2.03 6.25 -2.39 -0.01 2.02 16 21 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 22 H 0.06 2.40 8.01 -2.39 -0.02 2.38 16 23 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.90 7.43 -2.38 -0.02 1.88 16 26 H 0.11 2.62 7.73 -2.39 -0.02 2.60 16 27 H 0.05 1.63 8.11 -2.39 -0.02 1.61 16 28 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.40 21.31 7.05 -92.70 -0.65 20.65 16 31 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -69.50 256.59 3.71 -65.78 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.47 Total: 29.99 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 3.67 Total: -7.61 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -0.78 Total: -82.61 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -1.67 Total: -51.69 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.50 3.71 -65.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307564099.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.402 kcal (2) G-P(sol) polarization free energy of solvation -69.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds