Wall clock time and date at job start Thu Apr 9 2020 14:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.69980 * 2 1 4 4 C 1.53195 * 109.58904 * 239.64734 * 2 1 3 5 5 H 1.09001 * 109.49714 * 174.89759 * 4 2 1 6 6 C 1.50696 * 109.52503 * 54.81161 * 4 2 1 7 7 O 1.20826 * 120.00098 * 17.95408 * 6 4 2 8 8 O 1.34231 * 119.99542 * 197.95844 * 6 4 2 9 9 C 1.53044 * 109.30859 * 294.84299 * 4 2 1 10 10 C 1.53044 * 109.53952 * 298.63550 * 9 4 2 11 11 C 1.53189 * 109.31108 * 61.36343 * 10 9 4 12 12 N 1.46923 * 109.58842 * 120.34972 * 2 1 3 13 13 C 1.36933 * 120.63514 * 246.16003 * 12 2 1 14 14 H 1.08000 * 119.99671 * 331.82494 * 13 12 2 15 15 C 1.38813 * 120.00253 * 151.83008 * 13 12 2 16 16 N 1.31614 * 120.00342 * 158.66056 * 15 13 12 17 17 Si 1.86800 * 119.99547 * 338.65242 * 15 13 12 18 18 H 1.48501 * 109.47157 * 94.49337 * 17 15 13 19 19 H 1.48506 * 109.47007 * 214.49058 * 17 15 13 20 20 H 1.48499 * 109.47512 * 334.48883 * 17 15 13 21 21 H 1.09003 * 109.46438 * 176.43115 * 1 2 3 22 22 H 1.09000 * 109.46965 * 296.42628 * 1 2 3 23 23 H 1.08992 * 109.47027 * 56.43150 * 1 2 3 24 24 H 0.96705 * 116.99739 * 180.02562 * 8 6 4 25 25 H 1.08996 * 109.45992 * 178.61495 * 9 4 2 26 26 H 1.08999 * 109.44592 * 58.64794 * 9 4 2 27 27 H 1.09000 * 109.49544 * 301.41778 * 10 9 4 28 28 H 1.08992 * 109.49711 * 181.31412 * 10 9 4 29 29 H 1.09006 * 109.58612 * 65.15130 * 11 10 9 30 30 H 1.09000 * 109.58978 * 185.57672 * 11 10 9 31 31 H 0.96995 * 120.00383 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2455 5 1 3.1298 -0.6503 -1.2913 6 6 1.4414 -0.1061 -2.4783 7 8 0.9531 0.9976 -2.4203 8 8 1.4473 -0.7772 -3.6407 9 6 1.6416 -2.2041 -1.1701 10 6 2.2802 -2.8463 0.0636 11 6 1.7694 -2.1409 1.3237 12 7 2.0226 -0.6994 1.1945 13 6 2.7052 -0.0209 2.1686 14 1 3.2771 0.8591 1.9138 15 6 2.6622 -0.4642 3.4833 16 7 3.6055 -0.1079 4.3292 17 14 1.2654 -1.5665 4.0520 18 1 1.6826 -2.9879 3.9479 19 1 0.9295 -1.2513 5.4638 20 1 0.0735 -1.3365 3.1965 21 1 -0.3632 -1.0257 -0.0640 22 1 -0.3633 0.4574 0.9203 23 1 -0.3633 0.5682 -0.8562 24 1 1.0498 -0.3364 -4.4042 25 1 1.9845 -2.7202 -2.0668 26 1 0.5567 -2.2813 -1.0991 27 1 3.3641 -2.7472 0.0053 28 1 2.0125 -3.9021 0.1038 29 1 0.6988 -2.3155 1.4317 30 1 2.2946 -2.5273 2.1972 31 1 3.5756 -0.4180 5.2477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307693926.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:48 Heat of formation + Delta-G solvation = -97.596063 kcal Electronic energy + Delta-G solvation = -15179.736356 eV Core-core repulsion = 12653.639590 eV Total energy + Delta-G solvation = -2526.096765 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.64093 -39.39768 -37.06328 -35.13580 -33.10848 -32.82174 -29.22285 -26.39530 -25.47613 -23.39808 -22.54856 -20.03134 -18.92299 -18.70042 -17.58031 -17.20134 -16.73572 -15.89226 -15.57073 -14.94006 -14.76526 -14.53910 -14.15118 -14.09125 -13.32574 -13.12606 -12.82165 -12.74123 -12.58450 -12.17694 -12.11783 -11.75457 -11.70184 -11.54704 -11.14224 -11.13504 -10.66456 -8.96261 -8.17094 -5.49672 1.25157 1.30402 1.42744 1.52048 2.13441 2.42079 3.08301 3.32270 3.66224 3.92573 4.03366 4.28745 4.34599 4.45283 4.58603 4.70939 4.75099 4.83812 4.99077 5.04097 5.10110 5.19057 5.23791 5.33006 5.54722 5.67910 5.87708 6.12877 6.90896 7.08400 7.61368 8.01060 9.02778 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046198 B = 0.010600 C = 0.010005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.944379 B = 2640.938724 C = 2797.987540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.182 3.818 3 H 0.053 0.947 4 C -0.091 4.091 5 H 0.109 0.891 6 C 0.499 3.501 7 O -0.544 6.544 8 O -0.504 6.504 9 C -0.095 4.095 10 C -0.127 4.127 11 C 0.113 3.887 12 N -0.609 5.609 13 C -0.250 4.250 14 H 0.048 0.952 15 C -0.031 4.031 16 N -0.956 5.956 17 Si 0.945 3.055 18 H -0.270 1.270 19 H -0.313 1.313 20 H -0.260 1.260 21 H 0.061 0.939 22 H 0.037 0.963 23 H 0.069 0.931 24 H 0.426 0.574 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.040 -6.792 -14.760 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.076 3.924 3 H 0.071 0.929 4 C -0.111 4.111 5 H 0.127 0.873 6 C 0.343 3.657 7 O -0.435 6.435 8 O -0.317 6.317 9 C -0.132 4.132 10 C -0.166 4.166 11 C -0.011 4.011 12 N -0.332 5.332 13 C -0.379 4.379 14 H 0.066 0.934 15 C -0.226 4.226 16 N -0.601 5.601 17 Si 0.773 3.227 18 H -0.197 1.197 19 H -0.242 1.242 20 H -0.184 1.184 21 H 0.080 0.920 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.287 0.713 25 H 0.116 0.884 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.938 -6.696 -14.264 16.839 hybrid contribution -0.519 0.391 0.508 0.825 sum -6.458 -6.305 -13.757 16.453 Atomic orbital electron populations 1.22322 0.96754 1.01743 1.01382 1.20311 0.93114 0.94403 0.84602 0.92885 1.21525 1.01984 0.98496 0.89114 0.87294 1.23308 0.74730 0.82872 0.84824 1.90680 1.44465 1.22294 1.86025 1.84503 1.75745 1.51162 1.20286 1.21448 1.01266 0.91320 0.99205 1.21955 1.00743 0.99909 0.94023 1.21491 0.97918 0.83509 0.98169 1.44465 1.64896 1.03859 1.19985 1.18799 1.21242 1.10513 0.87386 0.93388 1.25890 0.99808 1.01057 0.95828 1.69966 1.33897 1.50482 1.05788 0.85917 0.81930 0.78938 0.75912 1.19651 1.24189 1.18411 0.91998 0.94398 0.91190 0.71253 0.88397 0.90975 0.92073 0.88934 0.94710 0.93189 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.93 8.58 71.98 0.62 -5.31 16 2 C 0.18 7.25 2.47 44.98 0.11 7.36 16 3 H 0.05 2.36 7.88 -2.38 -0.02 2.34 16 4 C -0.09 -2.79 2.58 -11.46 -0.03 -2.82 16 5 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 6 C 0.50 13.69 7.16 71.23 0.51 14.20 16 7 O -0.54 -18.21 15.02 21.96 0.33 -17.88 16 8 O -0.50 -9.45 12.77 -51.43 -0.66 -10.10 16 9 C -0.10 -2.45 4.74 30.62 0.15 -2.31 16 10 C -0.13 -3.83 6.08 30.67 0.19 -3.64 16 11 C 0.11 4.58 3.81 86.36 0.33 4.91 16 12 N -0.61 -28.31 2.46 -675.21 -1.66 -29.97 16 13 C -0.25 -14.28 10.02 84.03 0.84 -13.44 16 14 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 15 C -0.03 -1.81 5.21 84.86 0.44 -1.37 16 16 N -0.96 -60.33 13.97 21.65 0.30 -60.03 16 17 Si 0.94 46.36 24.39 68.60 1.67 48.03 16 18 H -0.27 -12.34 6.70 99.48 0.67 -11.67 16 19 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 20 H -0.26 -12.22 6.63 99.48 0.66 -11.56 16 21 H 0.06 2.02 5.74 -2.39 -0.01 2.00 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 2.40 5.91 -2.39 -0.01 2.38 16 24 H 0.43 4.05 9.10 -74.05 -0.67 3.38 16 25 H 0.10 2.01 7.82 -2.39 -0.02 1.99 16 26 H 0.07 1.78 6.42 -2.39 -0.02 1.77 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.04 1.36 6.52 -2.38 -0.02 1.34 16 30 H 0.05 2.25 4.69 -2.39 -0.01 2.24 16 31 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -69.79 242.73 3.52 -66.26 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.38 Total: 6.10 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 3.15 Total: -2.41 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -1.36 Total: -90.00 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.33 Total: -27.99 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.67 Total: 48.03 kcal Total: -69.79 3.52 -66.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307693926.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.334 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds