Wall clock time and date at job start Thu Apr 9 2020 14:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.70468 * 2 1 4 4 C 1.53196 * 109.58848 * 239.64283 * 2 1 3 5 5 H 1.09002 * 109.49455 * 305.56085 * 4 2 1 6 6 C 1.50701 * 109.49745 * 65.62454 * 4 2 1 7 7 O 1.20827 * 119.99675 * 0.02562 * 6 4 2 8 8 O 1.34222 * 120.00173 * 179.97438 * 6 4 2 9 9 C 1.53044 * 109.31389 * 185.57983 * 4 2 1 10 10 C 1.53043 * 109.53755 * 61.36349 * 9 4 2 11 11 C 1.53193 * 109.31366 * 298.63642 * 10 9 4 12 12 N 1.46919 * 108.77629 * 54.63460 * 11 10 9 13 13 C 1.36932 * 120.63151 * 126.41179 * 12 11 10 14 14 H 1.08004 * 120.00488 * 209.03636 * 13 12 11 15 15 C 1.38822 * 119.99867 * 29.03618 * 13 12 11 16 16 N 1.31611 * 119.99618 * 15.05412 * 15 13 12 17 17 Si 1.86803 * 120.00107 * 195.05178 * 15 13 12 18 18 H 1.48506 * 109.46946 * 60.00034 * 17 15 13 19 19 H 1.48497 * 109.47119 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47005 * 300.00285 * 17 15 13 21 21 H 1.09006 * 109.47143 * 180.35553 * 1 2 3 22 22 H 1.08998 * 109.47222 * 300.35660 * 1 2 3 23 23 H 1.09004 * 109.47003 * 60.35642 * 1 2 3 24 24 H 0.96695 * 117.00588 * 180.02562 * 8 6 4 25 25 H 1.08994 * 109.46069 * 181.38734 * 9 4 2 26 26 H 1.09003 * 109.45798 * 301.34426 * 9 4 2 27 27 H 1.09005 * 109.49229 * 178.68655 * 10 9 4 28 28 H 1.08994 * 109.49817 * 58.58895 * 10 9 4 29 29 H 1.09003 * 109.58387 * 294.84774 * 11 10 9 30 30 H 1.08995 * 109.70327 * 174.49656 * 11 10 9 31 31 H 0.97008 * 119.99568 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 1.6025 -1.7252 -1.2915 6 6 1.6598 0.0483 -2.4779 7 8 1.0399 1.0800 -2.3724 8 8 2.0076 -0.4046 -3.6926 9 6 3.5675 -0.8481 -1.1701 10 6 3.9569 -1.6658 0.0636 11 6 3.4650 -0.9470 1.3238 12 7 2.0226 -0.6995 1.1945 13 6 1.1537 -1.1127 2.1689 14 1 0.1360 -1.3675 1.9124 15 6 1.5810 -1.2039 3.4866 16 7 2.7036 -0.6247 3.8559 17 14 0.5625 -2.1487 4.7355 18 1 0.4341 -3.5630 4.3012 19 1 1.2313 -2.0970 6.0603 20 1 -0.7871 -1.5376 4.8374 21 1 -0.3634 -1.0277 0.0064 22 1 -0.3633 0.5193 0.8867 23 1 -0.3633 0.5083 -0.8932 24 1 1.7395 0.1287 -4.4533 25 1 3.9378 -1.3449 -2.0668 26 1 4.0062 0.1473 -1.0993 27 1 5.0412 -1.7696 0.1038 28 1 3.4983 -2.6528 0.0054 29 1 3.9903 0.0020 1.4317 30 1 3.6520 -1.5696 2.1987 31 1 3.0024 -0.6888 4.7766 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307693928.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:52 Heat of formation + Delta-G solvation = -80.432603 kcal Electronic energy + Delta-G solvation = -15057.097760 eV Core-core repulsion = 12531.745258 eV Total energy + Delta-G solvation = -2525.352502 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.20572 -37.52641 -35.82180 -33.23164 -31.88856 -30.20872 -26.77716 -25.06941 -23.59176 -21.30061 -20.43394 -19.10163 -17.76494 -16.62340 -15.93880 -15.29778 -14.78412 -13.97239 -13.74505 -13.49058 -13.25940 -12.70195 -12.47043 -11.70822 -11.51034 -11.37520 -11.06976 -10.85240 -10.72198 -10.51600 -10.31629 -10.23948 -10.02747 -9.94967 -9.48525 -9.32593 -8.46368 -6.66768 -5.77804 -3.21928 2.54156 3.35324 3.39810 3.44920 3.46852 4.50827 5.21419 5.26953 5.44604 5.50951 5.52455 5.89871 5.93676 6.11981 6.22613 6.37447 6.45218 6.50702 6.62638 6.66713 6.74761 6.87277 7.07101 7.13968 7.38224 7.67572 7.82875 8.20261 8.46126 9.21897 9.84448 10.41017 11.31107 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045397 B = 0.009879 C = 0.008749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.635128 B = 2833.696197 C = 3199.471486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.188 3.812 3 H 0.036 0.964 4 C -0.094 4.094 5 H 0.104 0.896 6 C 0.483 3.517 7 O -0.514 6.514 8 O -0.522 6.522 9 C -0.100 4.100 10 C -0.142 4.142 11 C 0.166 3.834 12 N -0.585 5.585 13 C -0.252 4.252 14 H 0.071 0.929 15 C 0.003 3.997 16 N -0.904 5.904 17 Si 0.903 3.097 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.283 1.283 21 H 0.049 0.951 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.400 0.600 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.019 0.981 30 H 0.091 0.909 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -1.455 -10.602 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.080 3.920 3 H 0.053 0.947 4 C -0.115 4.115 5 H 0.122 0.878 6 C 0.326 3.674 7 O -0.402 6.402 8 O -0.333 6.333 9 C -0.138 4.138 10 C -0.181 4.181 11 C 0.040 3.960 12 N -0.308 5.308 13 C -0.381 4.381 14 H 0.089 0.911 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.733 3.267 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.209 1.209 21 H 0.068 0.932 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.257 0.743 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.109 0.891 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.677 -1.395 -10.018 10.137 hybrid contribution -0.621 -0.093 0.128 0.641 sum 0.056 -1.488 -9.890 10.002 Atomic orbital electron populations 1.21934 0.95482 1.01175 1.01524 1.20209 0.93470 0.93374 0.84938 0.94662 1.21892 0.98970 1.00649 0.89972 0.87829 1.24004 0.74939 0.84048 0.84428 1.90659 1.37829 1.24649 1.87021 1.84607 1.75310 1.56169 1.17238 1.21396 0.92331 1.00912 0.99127 1.22218 0.99459 0.99535 0.96879 1.20872 0.83232 0.97359 0.94496 1.44140 1.03143 1.65141 1.18335 1.19157 0.94848 1.37927 0.86206 0.91118 1.25086 0.97857 0.99704 0.96924 1.70012 1.23375 1.44441 1.16965 0.86359 0.79643 0.80101 0.80583 1.21034 1.21659 1.20877 0.93192 0.91809 0.92785 0.74282 0.92281 0.92286 0.92644 0.92352 0.96253 0.89088 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 7.69 37.16 0.29 -2.67 16 2 C 0.19 4.07 2.60 -67.60 -0.18 3.89 16 3 H 0.04 0.84 7.96 -51.93 -0.41 0.42 16 4 C -0.09 -1.68 2.25 -91.65 -0.21 -1.89 16 5 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 6 C 0.48 7.96 7.35 36.01 0.26 8.23 16 7 O -0.51 -9.69 14.79 -18.75 -0.28 -9.97 16 8 O -0.52 -6.68 13.31 -39.24 -0.52 -7.20 16 9 C -0.10 -1.69 5.11 -26.69 -0.14 -1.82 16 10 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 11 C 0.17 3.90 5.29 -3.71 -0.02 3.88 16 12 N -0.58 -14.50 2.99 -164.77 -0.49 -15.00 16 13 C -0.25 -6.77 8.61 -15.06 -0.13 -6.90 16 14 H 0.07 1.85 6.20 -52.48 -0.33 1.53 16 15 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 16 N -0.90 -25.97 11.14 55.49 0.62 -25.36 16 17 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H 0.05 0.99 7.40 -51.93 -0.38 0.61 16 22 H 0.06 1.39 7.66 -51.93 -0.40 0.99 16 23 H 0.05 1.04 6.03 -51.93 -0.31 0.73 16 24 H 0.40 3.22 9.10 45.56 0.41 3.63 16 25 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 250.58 15.07 3.78 3.78 Total: -1.00 -30.40 250.58 -5.69 -36.09 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -3.40 Total: 1.21 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.37 Total: -0.08 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.13 Total: -40.35 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.80 Total: -17.17 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.40 -5.69 -36.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307693928.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.339 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds