Wall clock time and date at job start Thu Apr 9 2020 14:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.70468 * 2 1 4 4 C 1.53196 * 109.58848 * 239.64283 * 2 1 3 5 5 H 1.09002 * 109.49455 * 305.56085 * 4 2 1 6 6 C 1.50701 * 109.49745 * 65.62454 * 4 2 1 7 7 O 1.20827 * 119.99675 * 0.02562 * 6 4 2 8 8 O 1.34222 * 120.00173 * 179.97438 * 6 4 2 9 9 C 1.53044 * 109.31389 * 185.57983 * 4 2 1 10 10 C 1.53043 * 109.53755 * 61.36349 * 9 4 2 11 11 C 1.53193 * 109.31366 * 298.63642 * 10 9 4 12 12 N 1.46919 * 108.77629 * 54.63460 * 11 10 9 13 13 C 1.36932 * 120.63151 * 126.41179 * 12 11 10 14 14 H 1.08004 * 120.00488 * 209.03636 * 13 12 11 15 15 C 1.38822 * 119.99867 * 29.03618 * 13 12 11 16 16 N 1.31611 * 119.99618 * 15.05412 * 15 13 12 17 17 Si 1.86803 * 120.00107 * 195.05178 * 15 13 12 18 18 H 1.48506 * 109.46946 * 60.00034 * 17 15 13 19 19 H 1.48497 * 109.47119 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47005 * 300.00285 * 17 15 13 21 21 H 1.09006 * 109.47143 * 180.35553 * 1 2 3 22 22 H 1.08998 * 109.47222 * 300.35660 * 1 2 3 23 23 H 1.09004 * 109.47003 * 60.35642 * 1 2 3 24 24 H 0.96695 * 117.00588 * 180.02562 * 8 6 4 25 25 H 1.08994 * 109.46069 * 181.38734 * 9 4 2 26 26 H 1.09003 * 109.45798 * 301.34426 * 9 4 2 27 27 H 1.09005 * 109.49229 * 178.68655 * 10 9 4 28 28 H 1.08994 * 109.49817 * 58.58895 * 10 9 4 29 29 H 1.09003 * 109.58387 * 294.84774 * 11 10 9 30 30 H 1.08995 * 109.70327 * 174.49656 * 11 10 9 31 31 H 0.97008 * 119.99568 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 1.6025 -1.7252 -1.2915 6 6 1.6598 0.0483 -2.4779 7 8 1.0399 1.0800 -2.3724 8 8 2.0076 -0.4046 -3.6926 9 6 3.5675 -0.8481 -1.1701 10 6 3.9569 -1.6658 0.0636 11 6 3.4650 -0.9470 1.3238 12 7 2.0226 -0.6995 1.1945 13 6 1.1537 -1.1127 2.1689 14 1 0.1360 -1.3675 1.9124 15 6 1.5810 -1.2039 3.4866 16 7 2.7036 -0.6247 3.8559 17 14 0.5625 -2.1487 4.7355 18 1 0.4341 -3.5630 4.3012 19 1 1.2313 -2.0970 6.0603 20 1 -0.7871 -1.5376 4.8374 21 1 -0.3634 -1.0277 0.0064 22 1 -0.3633 0.5193 0.8867 23 1 -0.3633 0.5083 -0.8932 24 1 1.7395 0.1287 -4.4533 25 1 3.9378 -1.3449 -2.0668 26 1 4.0062 0.1473 -1.0993 27 1 5.0412 -1.7696 0.1038 28 1 3.4983 -2.6528 0.0054 29 1 3.9903 0.0020 1.4317 30 1 3.6520 -1.5696 2.1987 31 1 3.0024 -0.6888 4.7766 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307693928.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:52 Heat of formation + Delta-G solvation = -100.844690 kcal Electronic energy + Delta-G solvation = -15057.982895 eV Core-core repulsion = 12531.745258 eV Total energy + Delta-G solvation = -2526.237636 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.54297 -39.12650 -37.04797 -35.05463 -33.57279 -32.06469 -28.45943 -26.94614 -25.17803 -22.90215 -21.99583 -20.73356 -19.05173 -18.28739 -17.63282 -16.69726 -16.53509 -15.63561 -15.53552 -15.19366 -14.64675 -14.33579 -14.09151 -13.33227 -13.10313 -12.89011 -12.74116 -12.67820 -12.39792 -12.21088 -12.02504 -11.90161 -11.74186 -11.65258 -11.04622 -11.04241 -10.50901 -8.66530 -7.84362 -5.31257 1.25361 1.49073 1.50724 1.57328 2.14293 2.55871 3.30959 3.64183 3.82440 3.89907 4.12082 4.38805 4.54183 4.60792 4.64133 4.74915 4.92072 4.99002 5.05814 5.16212 5.28300 5.36231 5.39371 5.57867 5.66364 5.73171 5.79475 6.42473 7.08157 7.17699 7.86902 8.39154 9.22626 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045397 B = 0.009879 C = 0.008749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.635128 B = 2833.696197 C = 3199.471486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.182 3.818 3 H 0.010 0.990 4 C -0.089 4.089 5 H 0.113 0.887 6 C 0.497 3.503 7 O -0.543 6.543 8 O -0.506 6.506 9 C -0.093 4.093 10 C -0.129 4.129 11 C 0.168 3.832 12 N -0.602 5.602 13 C -0.256 4.256 14 H 0.075 0.925 15 C -0.052 4.052 16 N -0.937 5.937 17 Si 0.966 3.034 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.278 1.278 21 H 0.055 0.945 22 H 0.041 0.959 23 H 0.067 0.933 24 H 0.425 0.575 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.062 0.938 29 H -0.007 1.007 30 H 0.059 0.941 31 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 -2.574 -12.564 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.076 3.924 3 H 0.027 0.973 4 C -0.110 4.110 5 H 0.131 0.869 6 C 0.340 3.660 7 O -0.433 6.433 8 O -0.319 6.319 9 C -0.131 4.131 10 C -0.168 4.168 11 C 0.043 3.957 12 N -0.325 5.325 13 C -0.386 4.386 14 H 0.093 0.907 15 C -0.247 4.247 16 N -0.583 5.583 17 Si 0.794 3.206 18 H -0.201 1.201 19 H -0.222 1.222 20 H -0.204 1.204 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.287 0.713 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.011 0.989 30 H 0.078 0.922 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.446 -2.522 -12.042 12.311 hybrid contribution -0.544 0.307 0.649 0.901 sum -0.098 -2.215 -11.393 11.607 Atomic orbital electron populations 1.21829 0.94803 1.01345 1.01102 1.20260 0.94115 0.92354 0.85718 0.97278 1.21600 0.99745 1.00515 0.89177 0.86899 1.23429 0.74328 0.83104 0.85132 1.90666 1.39266 1.25791 1.87601 1.84508 1.74493 1.56115 1.16798 1.21372 0.91419 1.00736 0.99572 1.22034 1.00840 0.99060 0.94867 1.20739 0.82825 0.96034 0.96108 1.44396 1.03433 1.65640 1.19053 1.19489 0.95345 1.36883 0.86850 0.90710 1.25840 0.99124 1.01002 0.98760 1.70179 1.25091 1.46178 1.16874 0.85361 0.78148 0.79086 0.77966 1.20125 1.22232 1.20393 0.92570 0.93995 0.91405 0.71304 0.88682 0.92791 0.90220 0.91950 0.98901 0.92230 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.42 7.69 71.98 0.55 -4.87 16 2 C 0.18 7.85 2.60 44.97 0.12 7.97 16 3 H 0.01 0.46 7.96 -2.39 -0.02 0.44 16 4 C -0.09 -3.01 2.25 -11.46 -0.03 -3.04 16 5 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 6 C 0.50 14.89 7.35 71.24 0.52 15.42 16 7 O -0.54 -19.41 14.79 21.96 0.32 -19.09 16 8 O -0.51 -10.70 13.31 -51.34 -0.68 -11.38 16 9 C -0.09 -2.88 5.11 30.62 0.16 -2.73 16 10 C -0.13 -4.55 6.08 30.67 0.19 -4.36 16 11 C 0.17 8.03 5.29 86.36 0.46 8.49 16 12 N -0.60 -30.15 2.99 -675.23 -2.02 -32.16 16 13 C -0.26 -13.86 8.61 84.04 0.72 -13.13 16 14 H 0.08 3.91 6.20 -2.91 -0.02 3.89 16 15 C -0.05 -2.91 4.96 84.87 0.42 -2.49 16 16 N -0.94 -55.51 11.14 21.65 0.24 -55.27 16 17 Si 0.97 44.78 29.58 68.60 2.03 46.81 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H 0.06 2.17 7.40 -2.38 -0.02 2.16 16 22 H 0.04 1.84 7.66 -2.39 -0.02 1.82 16 23 H 0.07 2.55 6.03 -2.38 -0.01 2.53 16 24 H 0.43 4.89 9.10 -74.06 -0.67 4.21 16 25 H 0.09 2.33 8.09 -2.39 -0.02 2.31 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.06 3.20 6.06 -2.39 -0.01 3.19 16 31 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 Total: -1.00 -66.23 250.58 3.46 -62.77 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.46 Total: 7.05 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 3.11 Total: 1.27 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -1.78 Total: -87.43 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.36 Total: -30.47 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.23 3.46 -62.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307693928.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.077 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds