Wall clock time and date at job start Thu Apr 9 2020 14:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47222 * 2 1 4 4 C 1.50701 * 109.47244 * 239.99846 * 2 1 3 5 5 H 1.08004 * 119.99688 * 245.34714 * 4 2 1 6 6 C 1.37873 * 119.99877 * 65.35142 * 4 2 1 7 7 N 1.31513 * 119.99945 * 5.14432 * 6 4 2 8 8 Si 1.86804 * 119.99910 * 185.14461 * 6 4 2 9 9 H 1.48500 * 109.47164 * 84.99518 * 8 6 4 10 10 H 1.48496 * 109.47169 * 204.99936 * 8 6 4 11 11 H 1.48498 * 109.47038 * 324.99819 * 8 6 4 12 12 N 1.46902 * 109.46935 * 119.99778 * 2 1 3 13 13 C 1.46901 * 111.00079 * 275.00049 * 12 2 1 14 14 C 1.50701 * 109.47270 * 180.02562 * 13 12 2 15 15 C 1.31408 * 119.03623 * 114.99821 * 14 13 12 16 16 O 1.35889 * 121.91885 * 180.40277 * 15 14 13 17 17 C 1.43292 * 116.68650 * 343.07770 * 16 15 14 18 18 C 1.53597 * 107.93152 * 44.87667 * 17 16 15 19 19 O 1.35888 * 119.03891 * 294.73230 * 14 13 12 20 20 H 1.09000 * 109.46824 * 54.98019 * 1 2 3 21 21 H 1.09005 * 109.46601 * 174.97529 * 1 2 3 22 22 H 1.08998 * 109.47354 * 294.97493 * 1 2 3 23 23 H 0.97002 * 119.99743 * 180.02562 * 7 6 4 24 24 H 1.00898 * 111.00097 * 38.95345 * 12 2 1 25 25 H 1.08994 * 109.47278 * 300.00315 * 13 12 2 26 26 H 1.09000 * 109.47083 * 60.00033 * 13 12 2 27 27 H 1.07994 * 119.04011 * 0.39119 * 15 14 13 28 28 H 1.08993 * 109.77162 * 164.48811 * 17 16 15 29 29 H 1.09003 * 109.76850 * 285.27621 * 17 16 15 30 30 H 1.08996 * 109.76764 * 62.10433 * 18 17 16 31 31 H 1.08999 * 109.76672 * 182.88339 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5802 -1.6362 -1.1336 6 6 1.7927 -0.1786 -2.4797 7 7 1.2154 0.9975 -2.5939 8 14 2.2879 -1.1286 -4.0100 9 1 1.2113 -2.0868 -4.3678 10 1 2.5009 -0.1812 -5.1334 11 1 3.5452 -1.8730 -3.7451 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5884 -0.5214 3.5558 15 6 3.7448 -0.1789 4.0777 16 8 4.2603 -0.8152 5.1621 17 6 3.3510 -1.6077 5.9358 18 6 2.4986 -2.4351 4.9622 19 8 1.8330 -1.5232 4.0777 20 1 -0.3633 0.5897 -0.8416 21 1 -0.3633 -1.0238 -0.0900 22 1 -0.3634 0.4339 0.9315 23 1 1.0464 1.3715 -3.4728 24 1 1.4495 -1.4979 1.4101 25 1 2.7587 1.0462 2.1183 26 1 1.0870 0.6164 2.5525 27 1 4.3017 0.6317 3.6316 28 1 3.9098 -2.2731 6.5937 29 1 2.7073 -0.9574 6.5282 30 1 3.1390 -3.1072 4.3911 31 1 1.7599 -3.0125 5.5182 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308164752.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:57 Heat of formation + Delta-G solvation = -81.420766 kcal Electronic energy + Delta-G solvation = -14246.284006 eV Core-core repulsion = 11720.888654 eV Total energy + Delta-G solvation = -2525.395352 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.69466 -38.17627 -37.46284 -34.83254 -33.08214 -30.66015 -29.24265 -27.22799 -26.22149 -24.36024 -22.15361 -20.40329 -19.03938 -18.66192 -17.83287 -16.81064 -16.73275 -15.78724 -15.58867 -15.35081 -14.98512 -14.74503 -14.52024 -13.89467 -13.58476 -13.35666 -12.86820 -12.80440 -12.70141 -12.42337 -12.22741 -11.91328 -11.68092 -11.29131 -11.03328 -10.48235 -9.13031 -8.85651 -8.10651 -6.19554 1.20476 1.44471 1.44636 1.55356 2.38629 2.45589 2.52891 3.19340 3.58882 3.74514 4.02197 4.05754 4.29021 4.39046 4.47242 4.64771 4.68510 4.71607 4.76462 4.86042 5.05020 5.27347 5.37860 5.64495 5.74836 6.01325 6.21497 6.63050 6.71561 6.76771 6.92963 7.49180 8.97068 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054411 B = 0.006311 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.482145 B = 4435.571036 C = 4542.757871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.213 3.787 3 H 0.012 0.988 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.682 5.682 13 C 0.123 3.877 14 C -0.026 4.026 15 C -0.053 4.053 16 O -0.331 6.331 17 C 0.014 3.986 18 C 0.013 3.987 19 O -0.332 6.332 20 H 0.048 0.952 21 H 0.034 0.966 22 H 0.030 0.970 23 H 0.262 0.738 24 H 0.332 0.668 25 H 0.089 0.911 26 H 0.032 0.968 27 H 0.181 0.819 28 H 0.145 0.855 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 -4.619 15.221 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.105 3.895 3 H 0.030 0.970 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.312 5.312 13 C -0.006 4.006 14 C -0.072 4.072 15 C -0.117 4.117 16 O -0.245 6.245 17 C -0.061 4.061 18 C -0.062 4.062 19 O -0.247 6.247 20 H 0.067 0.933 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.198 0.802 28 H 0.163 0.837 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.789 -4.435 14.959 15.850 hybrid contribution -0.911 -0.181 -0.754 1.196 sum 1.878 -4.616 14.205 15.054 Atomic orbital electron populations 1.22190 1.00034 0.99631 0.99113 1.19004 0.89930 0.93301 0.87294 0.96977 1.21395 1.34652 1.08288 0.91187 0.92890 1.25707 0.95499 0.95690 1.01881 1.70050 1.44541 1.17459 1.24344 0.85541 0.78692 0.78403 0.78796 1.19987 1.20898 1.19623 1.60766 1.57979 1.09438 1.03051 1.20612 0.99466 0.94238 0.86326 1.20824 0.95320 0.93825 0.97238 1.22406 0.96716 1.01294 0.91261 1.86234 1.37727 1.62323 1.38254 1.23844 0.93899 0.95154 0.93164 1.23881 0.99004 0.91164 0.92150 1.86218 1.37736 1.39101 1.61667 0.93297 0.94665 0.95104 0.92934 0.85133 0.89282 0.94961 0.80234 0.83689 0.90299 0.91248 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.28 8.96 71.98 0.64 -6.64 16 2 C 0.21 10.99 2.45 44.17 0.11 11.10 16 3 H 0.01 0.69 7.78 -2.39 -0.02 0.68 16 4 C -0.52 -29.29 8.77 25.60 0.22 -29.07 16 5 H 0.05 3.03 7.82 -2.91 -0.02 3.01 16 6 C 0.01 0.60 5.29 84.65 0.45 1.04 16 7 N -0.92 -54.02 11.98 21.45 0.26 -53.76 16 8 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 N -0.68 -30.24 6.22 -499.46 -3.11 -33.34 16 13 C 0.12 4.57 5.86 85.56 0.50 5.07 16 14 C -0.03 -0.87 6.20 25.25 0.16 -0.71 16 15 C -0.05 -1.58 10.62 67.39 0.72 -0.86 16 16 O -0.33 -8.91 10.52 -78.27 -0.82 -9.73 16 17 C 0.01 0.27 7.32 72.18 0.53 0.80 16 18 C 0.01 0.28 7.33 72.18 0.53 0.81 16 19 O -0.33 -10.33 10.42 -78.25 -0.82 -11.14 16 20 H 0.05 2.59 6.84 -2.39 -0.02 2.58 16 21 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 22 H 0.03 1.32 7.35 -2.39 -0.02 1.30 16 23 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 24 H 0.33 14.38 8.43 -89.70 -0.76 13.62 16 25 H 0.09 3.21 7.61 -2.39 -0.02 3.20 16 26 H 0.03 1.20 7.36 -2.39 -0.02 1.19 16 27 H 0.18 4.79 7.74 -2.91 -0.02 4.76 16 28 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -64.81 262.74 1.76 -63.06 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.36 Total: 16.85 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.86 Total: -18.46 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -2.85 Total: -87.10 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -1.64 Total: -20.87 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.81 1.76 -63.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308164752.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.365 kcal (2) G-P(sol) polarization free energy of solvation -64.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds