Wall clock time and date at job start Thu Apr 9 2020 14:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.45319 * 2 1 4 4 C 1.53033 * 109.46423 * 240.02389 * 2 1 3 5 5 C 1.53119 * 109.28068 * 180.80400 * 4 2 1 6 6 H 1.08998 * 109.52707 * 177.56021 * 5 4 2 7 7 O 1.42903 * 109.57463 * 297.71955 * 5 4 2 8 8 C 1.53115 * 109.16086 * 57.65372 * 5 4 2 9 9 H 1.09000 * 109.50493 * 62.29011 * 8 5 4 10 10 C 1.52998 * 109.50456 * 182.40728 * 8 5 4 11 11 C 1.50707 * 109.47110 * 184.80421 * 10 8 5 12 12 H 1.08001 * 119.99843 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00015 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99991 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99913 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47327 * 90.00101 * 15 13 11 17 17 H 1.48499 * 109.47028 * 209.99954 * 15 13 11 18 18 H 1.48499 * 109.47026 * 329.99964 * 15 13 11 19 19 C 1.53045 * 109.27971 * 302.34662 * 8 5 4 20 20 N 1.46843 * 109.46370 * 119.96977 * 2 1 3 21 21 C 1.46906 * 111.00014 * 305.85593 * 20 2 1 22 22 H 1.09002 * 109.47454 * 300.02826 * 1 2 3 23 23 H 1.09005 * 109.47207 * 60.03162 * 1 2 3 24 24 H 1.09004 * 109.47154 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.50512 * 60.86231 * 4 2 1 26 26 H 1.09001 * 109.53969 * 300.76752 * 4 2 1 27 27 H 0.96698 * 113.99671 * 299.71274 * 7 5 4 28 28 H 1.09003 * 109.46919 * 304.80149 * 10 8 5 29 29 H 1.08995 * 109.47630 * 64.80423 * 10 8 5 30 30 H 0.97001 * 119.99951 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.46198 * 299.16264 * 19 8 5 32 32 H 1.08997 * 109.46241 * 179.19004 * 19 8 5 33 33 H 1.08992 * 109.47459 * 291.83356 * 21 20 2 34 34 H 1.09004 * 109.47040 * 51.83507 * 21 20 2 35 35 H 1.09000 * 109.47033 * 171.83459 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7361 -1.2355 6 1 3.9380 -1.2863 -2.1019 7 8 4.0634 0.6048 -1.2777 8 6 4.0548 -1.4187 0.0468 9 1 3.7126 -2.4535 0.0596 10 6 5.5835 -1.3848 0.0980 11 6 6.0633 -2.1588 1.2988 12 1 5.3492 -2.6282 1.9592 13 6 7.4138 -2.2684 1.5538 14 7 7.8324 -2.9434 2.6020 15 14 8.6489 -1.4570 0.4112 16 1 8.9250 -0.0757 0.8813 17 1 9.9104 -2.2405 0.4092 18 1 8.0933 -1.4097 -0.9651 19 6 3.4865 -0.6775 1.2592 20 7 2.0193 -0.6916 1.1994 21 6 1.4373 -0.1104 2.4166 22 1 -0.3634 0.5143 0.8897 23 1 -0.3634 0.5134 -0.8903 24 1 -0.3634 -1.0277 0.0005 25 1 1.6895 -0.1982 -2.1400 26 1 1.6659 -1.7447 -1.2583 27 1 3.7949 1.0978 -2.0651 28 1 5.9875 -1.8344 -0.8091 29 1 5.9218 -0.3514 0.1730 30 1 8.7825 -3.0208 2.7812 31 1 3.8403 0.3534 1.2532 32 1 3.8174 -1.1697 2.1737 33 1 1.8277 0.8970 2.5608 34 1 0.3526 -0.0688 2.3166 35 1 1.6996 -0.7281 3.2755 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260780789.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:06 Heat of formation + Delta-G solvation = -57.684994 kcal Electronic energy + Delta-G solvation = -15203.890487 eV Core-core repulsion = 12815.357491 eV Total energy + Delta-G solvation = -2388.532997 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36352 -35.96970 -33.90586 -31.93078 -31.72970 -28.74340 -26.35956 -25.45539 -22.85556 -21.71755 -19.95451 -19.05951 -16.74534 -16.48713 -15.40501 -14.96397 -14.45531 -14.33194 -13.89067 -13.28570 -13.08205 -12.61809 -12.47174 -12.00641 -11.71487 -11.65084 -11.45891 -11.30510 -10.96539 -10.77763 -10.74204 -10.23543 -9.84109 -9.82085 -9.48774 -9.15032 -8.94045 -8.45620 -7.84361 -5.97060 -3.93756 3.37345 3.43817 3.49771 4.29152 4.52858 4.71383 5.03343 5.07701 5.26002 5.38118 5.52628 5.57091 5.67142 5.70274 5.79965 5.87979 5.94444 6.03214 6.09404 6.22262 6.29181 6.36101 6.41608 6.68641 6.87819 6.98568 7.33159 7.52793 7.59399 7.64948 7.86791 8.05707 8.61631 9.08546 9.66458 11.16238 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041806 B = 0.009085 C = 0.007970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.598091 B = 3081.331709 C = 3512.508922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.085 3.915 3 H 0.041 0.959 4 C -0.141 4.141 5 C 0.101 3.899 6 H 0.050 0.950 7 O -0.557 6.557 8 C -0.059 4.059 9 H 0.080 0.920 10 C -0.004 4.004 11 C -0.516 4.516 12 H 0.074 0.926 13 C 0.066 3.934 14 N -0.906 5.906 15 Si 0.879 3.121 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.266 1.266 19 C 0.074 3.926 20 N -0.542 5.542 21 C 0.022 3.978 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.362 0.638 28 H 0.014 0.986 29 H 0.020 0.980 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.086 0.914 33 H 0.020 0.980 34 H 0.065 0.935 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.891 6.670 -7.143 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 H 0.059 0.941 4 C -0.179 4.179 5 C 0.042 3.958 6 H 0.068 0.932 7 O -0.361 6.361 8 C -0.077 4.077 9 H 0.098 0.902 10 C -0.042 4.042 11 C -0.554 4.554 12 H 0.092 0.908 13 C -0.135 4.135 14 N -0.545 5.545 15 Si 0.707 3.293 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.191 1.191 19 C -0.053 4.053 20 N -0.267 5.267 21 C -0.126 4.126 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.207 0.793 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.616 5.942 -6.492 15.382 hybrid contribution 0.768 1.361 -0.996 1.853 sum -11.848 7.303 -7.488 15.804 Atomic orbital electron populations 1.21958 0.95230 1.02242 1.01109 1.21451 0.94195 0.95847 0.90896 0.94090 1.22326 0.97174 1.01794 0.96649 1.22098 0.91200 0.83093 0.99405 0.93187 1.86652 1.77104 1.25725 1.46595 1.21110 0.98140 0.97959 0.90525 0.90161 1.19520 0.90274 0.97147 0.97242 1.21199 0.92650 1.32295 1.09221 0.90816 1.25011 0.98492 0.94951 0.95040 1.69920 1.14916 1.42074 1.27602 0.86786 0.80717 0.79537 0.82288 1.20431 1.21605 1.19068 1.22064 0.83819 0.99247 1.00175 1.62037 1.09216 1.54132 1.01322 1.22402 0.99567 0.97460 0.93185 0.92579 0.92797 0.91960 0.92184 0.90447 0.79281 0.96770 0.96165 0.92894 0.94786 0.89555 0.96187 0.91604 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.79 37.16 0.33 -1.37 16 2 C 0.08 1.22 2.31 -67.73 -0.16 1.07 16 3 H 0.04 0.64 7.76 -51.93 -0.40 0.23 16 4 C -0.14 -1.96 5.08 -26.65 -0.14 -2.09 16 5 C 0.10 1.69 3.26 -26.61 -0.09 1.60 16 6 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 7 O -0.56 -9.30 11.52 -35.23 -0.41 -9.71 16 8 C -0.06 -1.21 2.14 -90.54 -0.19 -1.40 16 9 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 10 C 0.00 -0.10 3.28 -27.88 -0.09 -0.19 16 11 C -0.52 -14.86 8.97 -34.44 -0.31 -15.17 16 12 H 0.07 2.27 7.30 -52.49 -0.38 1.88 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.91 -28.36 13.96 55.43 0.77 -27.58 16 15 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 16 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 19 C 0.07 1.49 4.41 -3.83 -0.02 1.47 16 20 N -0.54 -9.10 4.75 -234.93 -1.12 -10.21 16 21 C 0.02 0.32 9.30 60.07 0.56 0.88 16 22 H 0.06 0.61 6.15 -51.93 -0.32 0.29 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.36 4.18 9.09 45.56 0.41 4.60 16 28 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 29 H 0.02 0.52 7.21 -51.93 -0.37 0.14 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 31 H 0.03 0.73 7.76 -51.93 -0.40 0.32 16 32 H 0.09 1.93 6.96 -51.93 -0.36 1.57 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.81 5.75 -51.93 -0.30 0.51 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 270.06 15.07 4.07 4.07 Total: -1.00 -31.88 270.06 -6.60 -38.48 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.05 Total: 0.48 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -0.20 Total: -13.35 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.34 Total: -37.80 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.41 Total: -9.71 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.88 -6.60 -38.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260780789.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.202 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds