Wall clock time and date at job start Thu Apr 9 2020 14:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.45319 * 2 1 4 4 C 1.53033 * 109.46423 * 240.02389 * 2 1 3 5 5 C 1.53119 * 109.28068 * 180.80400 * 4 2 1 6 6 H 1.08998 * 109.52707 * 177.56021 * 5 4 2 7 7 O 1.42903 * 109.57463 * 297.71955 * 5 4 2 8 8 C 1.53115 * 109.16086 * 57.65372 * 5 4 2 9 9 H 1.09000 * 109.50493 * 62.29011 * 8 5 4 10 10 C 1.52998 * 109.50456 * 182.40728 * 8 5 4 11 11 C 1.50707 * 109.47110 * 184.80421 * 10 8 5 12 12 H 1.08001 * 119.99843 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00015 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99991 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99913 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47327 * 90.00101 * 15 13 11 17 17 H 1.48499 * 109.47028 * 209.99954 * 15 13 11 18 18 H 1.48499 * 109.47026 * 329.99964 * 15 13 11 19 19 C 1.53045 * 109.27971 * 302.34662 * 8 5 4 20 20 N 1.46843 * 109.46370 * 119.96977 * 2 1 3 21 21 C 1.46906 * 111.00014 * 305.85593 * 20 2 1 22 22 H 1.09002 * 109.47454 * 300.02826 * 1 2 3 23 23 H 1.09005 * 109.47207 * 60.03162 * 1 2 3 24 24 H 1.09004 * 109.47154 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.50512 * 60.86231 * 4 2 1 26 26 H 1.09001 * 109.53969 * 300.76752 * 4 2 1 27 27 H 0.96698 * 113.99671 * 299.71274 * 7 5 4 28 28 H 1.09003 * 109.46919 * 304.80149 * 10 8 5 29 29 H 1.08995 * 109.47630 * 64.80423 * 10 8 5 30 30 H 0.97001 * 119.99951 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.46198 * 299.16264 * 19 8 5 32 32 H 1.08997 * 109.46241 * 179.19004 * 19 8 5 33 33 H 1.08992 * 109.47459 * 291.83356 * 21 20 2 34 34 H 1.09004 * 109.47040 * 51.83507 * 21 20 2 35 35 H 1.09000 * 109.47033 * 171.83459 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7361 -1.2355 6 1 3.9380 -1.2863 -2.1019 7 8 4.0634 0.6048 -1.2777 8 6 4.0548 -1.4187 0.0468 9 1 3.7126 -2.4535 0.0596 10 6 5.5835 -1.3848 0.0980 11 6 6.0633 -2.1588 1.2988 12 1 5.3492 -2.6282 1.9592 13 6 7.4138 -2.2684 1.5538 14 7 7.8324 -2.9434 2.6020 15 14 8.6489 -1.4570 0.4112 16 1 8.9250 -0.0757 0.8813 17 1 9.9104 -2.2405 0.4092 18 1 8.0933 -1.4097 -0.9651 19 6 3.4865 -0.6775 1.2592 20 7 2.0193 -0.6916 1.1994 21 6 1.4373 -0.1104 2.4166 22 1 -0.3634 0.5143 0.8897 23 1 -0.3634 0.5134 -0.8903 24 1 -0.3634 -1.0277 0.0005 25 1 1.6895 -0.1982 -2.1400 26 1 1.6659 -1.7447 -1.2583 27 1 3.7949 1.0978 -2.0651 28 1 5.9875 -1.8344 -0.8091 29 1 5.9218 -0.3514 0.1730 30 1 8.7825 -3.0208 2.7812 31 1 3.8403 0.3534 1.2532 32 1 3.8174 -1.1697 2.1737 33 1 1.8277 0.8970 2.5608 34 1 0.3526 -0.0688 2.3166 35 1 1.6996 -0.7281 3.2755 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260780789.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:06 Heat of formation + Delta-G solvation = -82.501307 kcal Electronic energy + Delta-G solvation = -15204.966604 eV Core-core repulsion = 12815.357491 eV Total energy + Delta-G solvation = -2389.609113 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70219 -37.24517 -35.76453 -33.86687 -32.99091 -30.34598 -27.71030 -27.00348 -24.39441 -23.30229 -21.37975 -20.55292 -18.90725 -17.79145 -16.72198 -16.46031 -16.16289 -15.67752 -15.39789 -14.78348 -14.54455 -14.32447 -14.03895 -13.58452 -13.32679 -12.87276 -12.65356 -12.60964 -12.54589 -12.27487 -12.12933 -11.82208 -11.70497 -11.56646 -11.36185 -10.82180 -10.72838 -10.51712 -9.19153 -8.27647 -6.29809 1.34348 1.34989 1.48152 2.36444 2.99415 3.09667 3.51374 3.86231 3.93387 4.03866 4.19151 4.40235 4.47355 4.54065 4.58742 4.65128 4.76777 4.87106 4.94680 4.97686 5.00411 5.04154 5.12780 5.21120 5.27253 5.37872 5.46317 5.65014 5.70560 6.18008 6.30926 6.32292 6.76753 7.04554 7.33941 8.88987 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041806 B = 0.009085 C = 0.007970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.598091 B = 3081.331709 C = 3512.508922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.033 0.967 4 C -0.134 4.134 5 C 0.106 3.894 6 H 0.061 0.939 7 O -0.577 6.577 8 C -0.061 4.061 9 H 0.068 0.932 10 C 0.005 3.995 11 C -0.522 4.522 12 H 0.035 0.965 13 C 0.004 3.996 14 N -0.951 5.951 15 Si 0.948 3.052 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.250 1.250 19 C 0.088 3.912 20 N -0.550 5.550 21 C 0.021 3.979 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.387 0.613 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.265 0.735 31 H 0.017 0.983 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.095 0.905 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 8.052 -9.539 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 H 0.051 0.949 4 C -0.171 4.171 5 C 0.048 3.952 6 H 0.079 0.921 7 O -0.384 6.384 8 C -0.080 4.080 9 H 0.086 0.914 10 C -0.033 4.033 11 C -0.560 4.560 12 H 0.054 0.946 13 C -0.192 4.192 14 N -0.593 5.593 15 Si 0.772 3.228 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.174 1.174 19 C -0.040 4.040 20 N -0.275 5.275 21 C -0.127 4.127 22 H 0.080 0.920 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.236 0.764 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.114 0.886 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.960 7.336 -8.911 18.114 hybrid contribution 1.116 0.919 -0.176 1.456 sum -12.844 8.255 -9.088 17.768 Atomic orbital electron populations 1.21905 0.92436 1.02713 1.02699 1.21632 0.96337 0.95082 0.89818 0.94862 1.22297 0.94569 1.02382 0.97898 1.21909 0.93308 0.83130 0.96899 0.92120 1.86586 1.77618 1.25689 1.48539 1.21006 0.95404 0.98169 0.93460 0.91408 1.19392 0.93364 0.95511 0.95062 1.21488 0.92271 1.32141 1.10074 0.94634 1.25957 1.00796 0.95679 0.96789 1.70067 1.15603 1.43868 1.29711 0.85690 0.78025 0.78501 0.80596 1.19777 1.20717 1.17352 1.21703 0.86532 0.97440 0.98293 1.62023 1.06686 1.55409 1.03353 1.22476 1.01202 0.96927 0.92101 0.91957 0.90335 0.91982 0.88374 0.90408 0.76414 0.96574 0.96966 0.92622 0.96474 0.93441 0.96347 0.88613 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.79 71.98 0.63 -2.04 16 2 C 0.08 2.08 2.31 44.94 0.10 2.18 16 3 H 0.03 0.94 7.76 -2.39 -0.02 0.93 16 4 C -0.13 -3.24 5.08 30.64 0.16 -3.09 16 5 C 0.11 3.33 3.26 30.67 0.10 3.43 16 6 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 7 O -0.58 -17.82 11.52 -148.98 -1.72 -19.54 16 8 C -0.06 -2.56 2.14 -10.74 -0.02 -2.58 16 9 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 10 C 0.00 0.23 3.28 29.85 0.10 0.33 16 11 C -0.52 -31.22 8.97 25.60 0.23 -30.99 16 12 H 0.04 2.33 7.30 -2.91 -0.02 2.31 16 13 C 0.00 0.25 5.47 84.65 0.46 0.71 16 14 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 15 Si 0.95 46.58 27.47 68.60 1.88 48.46 16 16 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.25 -11.53 6.54 99.48 0.65 -10.88 16 19 C 0.09 3.66 4.41 86.33 0.38 4.04 16 20 N -0.55 -18.12 4.75 -897.17 -4.26 -22.38 16 21 C 0.02 0.59 9.30 127.69 1.19 1.78 16 22 H 0.06 1.11 6.15 -2.39 -0.01 1.10 16 23 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.39 7.53 9.09 -74.06 -0.67 6.86 16 28 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 29 H 0.01 0.62 7.21 -2.39 -0.02 0.60 16 30 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.02 0.75 7.76 -2.39 -0.02 0.73 16 32 H 0.05 2.28 6.96 -2.39 -0.02 2.26 16 33 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.10 2.12 5.75 -2.38 -0.01 2.11 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -70.93 270.06 -0.13 -71.07 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.33 Total: 9.74 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 3.33 Total: -26.23 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -3.96 Total: -83.49 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.72 Total: -19.54 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.88 Total: 48.46 kcal Total: -70.93 -0.13 -71.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260780789.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.434 kcal (2) G-P(sol) polarization free energy of solvation -70.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds