Wall clock time and date at job start Thu Apr 9 2020 14:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.44927 * 2 1 4 4 C 1.53037 * 109.46177 * 119.97074 * 2 1 3 5 5 C 1.53116 * 109.27838 * 179.19726 * 4 2 1 6 6 H 1.09001 * 109.57745 * 62.27830 * 5 4 2 7 7 O 1.42897 * 109.52575 * 182.43954 * 5 4 2 8 8 C 1.42897 * 114.00323 * 209.67984 * 7 5 4 9 9 C 1.50697 * 109.47553 * 179.97438 * 8 7 5 10 10 H 1.08004 * 119.99691 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00473 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99804 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00427 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46967 * 90.00202 * 13 11 9 15 15 H 1.48493 * 109.47531 * 210.00252 * 13 11 9 16 16 H 1.48503 * 109.46911 * 330.00375 * 13 11 9 17 17 C 1.53121 * 109.16211 * 302.34662 * 5 4 2 18 18 C 1.53038 * 109.27700 * 57.65214 * 17 5 4 19 19 N 1.46840 * 109.46224 * 240.02534 * 2 1 3 20 20 C 1.46901 * 111.00289 * 54.14448 * 19 2 1 21 21 H 1.09004 * 109.46888 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47319 * 299.97585 * 1 2 3 23 23 H 1.08997 * 109.47488 * 59.97440 * 1 2 3 24 24 H 1.08999 * 109.50482 * 59.25887 * 4 2 1 25 25 H 1.08996 * 109.53737 * 299.15687 * 4 2 1 26 26 H 1.08995 * 109.47362 * 300.00465 * 8 7 5 27 27 H 1.09009 * 109.47039 * 59.99997 * 8 7 5 28 28 H 0.97003 * 119.99848 * 179.97438 * 12 11 9 29 29 H 1.08999 * 109.50305 * 297.71520 * 17 5 4 30 30 H 1.08997 * 109.50558 * 177.59649 * 17 5 4 31 31 H 1.09001 * 109.46159 * 180.80834 * 18 17 5 32 32 H 1.09004 * 109.45652 * 60.83383 * 18 17 5 33 33 H 1.09002 * 109.47401 * 180.25465 * 20 19 2 34 34 H 1.09001 * 109.46874 * 60.25478 * 20 19 2 35 35 H 1.09004 * 109.46970 * 300.25611 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5709 -0.7359 1.2357 6 1 3.9466 0.2868 1.2677 7 8 4.0521 -1.4572 2.3715 8 6 5.3242 -1.0123 2.8465 9 6 5.7317 -1.8374 4.0398 10 1 5.0840 -2.6235 4.3993 11 6 6.9316 -1.5898 4.6721 12 7 7.7204 -0.6330 4.2340 13 14 7.4370 -2.6131 6.1509 14 1 8.2070 -3.7976 5.6933 15 1 8.2819 -1.7927 7.0553 16 1 6.2237 -3.0628 6.8796 17 6 4.0548 -1.4187 -0.0466 18 6 3.4865 -0.6776 -1.2590 19 7 2.0193 -0.6917 -1.1993 20 6 1.4373 -0.1106 -2.4165 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 -0.3634 0.5142 -0.8897 24 1 1.6660 -1.7446 1.2577 25 1 1.6895 -0.1987 2.1403 26 1 6.0666 -1.1243 2.0563 27 1 5.2574 0.0365 3.1362 28 1 8.5645 -0.4585 4.6790 29 1 3.7125 -2.4535 -0.0594 30 1 5.1439 -1.3946 -0.0830 31 1 3.8175 -1.1699 -2.1735 32 1 3.8403 0.3534 -1.2530 33 1 1.8129 -0.6444 -3.2895 34 1 1.7157 0.9409 -2.4861 35 1 0.3514 -0.1971 -2.3771 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261057568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:38 Heat of formation + Delta-G solvation = -78.490713 kcal Electronic energy + Delta-G solvation = -14646.807290 eV Core-core repulsion = 12257.372089 eV Total energy + Delta-G solvation = -2389.435200 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53568 -38.22310 -35.05122 -33.41828 -33.33036 -29.54336 -28.03133 -26.86186 -24.59880 -23.86315 -22.17412 -20.77672 -18.67351 -17.46432 -16.87445 -16.53381 -16.30708 -15.94774 -15.71834 -14.97968 -14.58671 -14.23654 -13.83156 -13.56888 -13.09997 -12.97384 -12.87136 -12.78990 -12.75756 -12.53680 -12.18847 -12.06327 -11.84804 -11.78270 -11.33599 -11.24306 -10.83708 -10.16050 -9.29903 -8.34261 -6.47379 1.38955 1.42139 1.54290 2.33260 2.90773 2.99291 3.07129 3.80519 3.82353 4.02914 4.08892 4.26973 4.31465 4.48677 4.51206 4.59764 4.67515 4.75994 4.78677 4.88944 4.93054 4.95597 5.03582 5.08330 5.10680 5.23680 5.26579 5.38991 5.54035 5.94025 6.09296 6.17527 6.51923 6.80363 7.25024 8.78149 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.064814 B = 0.005965 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.898845 B = 4693.265420 C = 4911.582695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.037 0.963 4 C -0.100 4.100 5 C 0.076 3.924 6 H 0.036 0.964 7 O -0.404 6.404 8 C 0.212 3.788 9 C -0.551 4.551 10 H 0.061 0.939 11 C 0.007 3.993 12 N -0.931 5.931 13 Si 0.985 3.015 14 H -0.267 1.267 15 H -0.273 1.273 16 H -0.264 1.264 17 C -0.132 4.132 18 C 0.068 3.932 19 N -0.550 5.550 20 C 0.022 3.978 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.069 0.931 26 H -0.015 1.015 27 H -0.018 1.018 28 H 0.271 0.729 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 2.040 -11.279 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 H 0.055 0.945 4 C -0.138 4.138 5 C 0.018 3.982 6 H 0.054 0.946 7 O -0.324 6.324 8 C 0.137 3.863 9 C -0.589 4.589 10 H 0.080 0.920 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.807 3.193 14 H -0.192 1.192 15 H -0.198 1.198 16 H -0.188 1.188 17 C -0.171 4.171 18 C -0.060 4.060 19 N -0.276 5.276 20 C -0.126 4.126 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.003 0.997 27 H -0.001 1.001 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.134 1.502 -11.144 16.543 hybrid contribution 1.208 0.798 0.578 1.559 sum -10.926 2.300 -10.566 15.372 Atomic orbital electron populations 1.21865 0.91846 1.03004 1.02943 1.21584 0.97098 0.94534 0.88983 0.94505 1.21646 0.92181 1.02065 0.97911 1.22251 0.95653 0.93884 0.86387 0.94605 1.87843 1.37493 1.60363 1.46698 1.19819 0.80041 0.93281 0.93114 1.21403 1.04998 1.18711 1.13753 0.92028 1.25987 0.95444 0.96649 1.01080 1.70076 1.12123 1.32137 1.42673 0.85156 0.78446 0.78178 0.77474 1.19190 1.19765 1.18829 1.22003 0.99680 1.00895 0.94474 1.21972 0.87544 0.98478 0.98025 1.61960 1.06806 1.55669 1.03117 1.22502 1.01373 0.97316 0.91372 0.91768 0.91322 0.90598 0.91086 0.91239 0.99683 1.00058 0.91979 0.91263 0.92881 0.88745 0.95048 0.90472 0.95467 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.76 71.98 0.63 -2.03 16 2 C 0.09 2.21 2.44 44.94 0.11 2.31 16 3 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 4 C -0.10 -3.27 5.03 30.65 0.15 -3.12 16 5 C 0.08 3.08 2.68 30.67 0.08 3.17 16 6 H 0.04 1.50 7.79 -2.39 -0.02 1.48 16 7 O -0.40 -20.91 9.98 -148.98 -1.49 -22.40 16 8 C 0.21 12.43 5.50 71.24 0.39 12.83 16 9 C -0.55 -33.82 9.43 25.60 0.24 -33.58 16 10 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 11 C 0.01 0.41 5.46 84.65 0.46 0.87 16 12 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 13 Si 0.99 45.04 29.54 68.60 2.03 47.06 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 16 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 17 C -0.13 -4.70 5.71 30.65 0.18 -4.52 16 18 C 0.07 1.84 5.46 86.33 0.47 2.32 16 19 N -0.55 -13.69 4.75 -897.15 -4.26 -17.95 16 20 C 0.02 0.39 9.06 127.69 1.16 1.54 16 21 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 1.16 6.32 -2.39 -0.02 1.14 16 24 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 26 H -0.01 -0.89 7.94 -2.39 -0.02 -0.91 16 27 H -0.02 -1.12 8.09 -2.38 -0.02 -1.14 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.05 2.02 7.94 -2.39 -0.02 2.00 16 31 H 0.09 2.19 8.09 -2.39 -0.02 2.17 16 32 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.08 1.21 8.10 -2.39 -0.02 1.19 16 34 H 0.03 0.46 8.14 -2.39 -0.02 0.45 16 35 H 0.09 1.29 6.20 -2.38 -0.01 1.28 16 Total: -1.00 -67.48 280.12 1.47 -66.01 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.03 Total: 4.13 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 3.88 Total: -20.22 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -3.97 Total: -74.59 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -1.49 Total: -22.40 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -67.48 1.47 -66.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.482 kcal (2) G-P(sol) polarization free energy of solvation -67.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds