Wall clock time and date at job start Thu Apr 9 2020 14:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 108.74466 * 2 1 4 4 C 1.50752 * 108.85547 * 241.54527 * 2 1 3 5 5 C 1.54431 * 109.03532 * 146.18408 * 4 2 1 6 6 N 1.39781 * 111.70219 * 77.43388 * 5 4 2 7 7 C 1.46899 * 110.99968 * 170.82545 * 6 5 4 8 8 C 1.47646 * 114.75720 * 297.60238 * 6 5 4 9 9 C 1.50806 * 107.97677 * 82.93161 * 8 6 5 10 10 H 1.09008 * 109.05347 * 25.47433 * 9 8 6 11 11 O 1.42895 * 109.05558 * 144.37278 * 9 8 6 12 12 C 1.34923 * 117.00309 * 272.12050 * 11 9 8 13 13 H 1.07996 * 119.99766 * 359.97438 * 12 11 9 14 14 C 1.38637 * 120.00113 * 179.97438 * 12 11 9 15 15 N 1.31580 * 119.99974 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47264 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47249 * 119.99927 * 16 14 12 19 19 H 1.48504 * 109.46751 * 239.99505 * 16 14 12 20 20 C 1.53817 * 111.61921 * 264.92744 * 9 8 6 21 21 H 1.09003 * 109.47520 * 178.45250 * 1 2 3 22 22 H 1.08998 * 109.47612 * 298.45372 * 1 2 3 23 23 H 1.09002 * 109.47077 * 58.45035 * 1 2 3 24 24 H 1.09007 * 109.54504 * 26.31869 * 4 2 1 25 25 H 1.08998 * 109.61868 * 266.09837 * 4 2 1 26 26 H 1.09002 * 109.02459 * 197.98331 * 5 4 2 27 27 H 1.08999 * 109.02214 * 316.88287 * 5 4 2 28 28 H 1.09010 * 109.47059 * 56.04367 * 7 6 5 29 29 H 1.09007 * 109.46958 * 176.03974 * 7 6 5 30 30 H 1.08995 * 109.47451 * 296.04412 * 7 6 5 31 31 H 1.08994 * 109.78980 * 323.30423 * 8 6 5 32 32 H 1.09002 * 109.80852 * 202.56279 * 8 6 5 33 33 H 0.97000 * 119.99837 * 180.02562 * 15 14 12 34 34 H 1.09000 * 108.98057 * 280.31138 * 20 9 8 35 35 H 1.09004 * 108.91425 * 161.55104 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8802 1.0321 0.0000 4 6 2.0172 -0.6797 -1.2543 5 6 3.3277 -0.0058 -1.7158 6 7 4.4201 -0.4202 -0.9485 7 6 5.6826 0.0548 -1.5303 8 6 4.3361 -0.0742 0.4844 9 6 3.5003 -1.1263 1.1690 10 1 3.5565 -2.0529 0.5976 11 8 4.0215 -1.3562 2.4795 12 6 4.9970 -2.2809 2.5973 13 1 5.3488 -2.8089 1.7234 14 6 5.5478 -2.5531 3.8401 15 7 5.1195 -1.9094 4.9048 16 14 6.8978 -3.8338 4.0032 17 1 7.1971 -4.4104 2.6679 18 1 8.1210 -3.1964 4.5531 19 1 6.4480 -4.9133 4.9185 20 6 2.0282 -0.6952 1.2827 21 1 -0.3634 -1.0273 -0.0278 22 1 -0.3634 0.4896 0.9035 23 1 -0.3633 0.5377 -0.8758 24 1 1.2636 -0.5855 -2.0363 25 1 2.2015 -1.7346 -1.0509 26 1 3.5098 -0.2607 -2.7599 27 1 3.2214 1.0754 -1.6277 28 1 5.6488 1.1393 -1.6356 29 1 6.5103 -0.2212 -0.8768 30 1 5.8255 -0.4010 -2.5100 31 1 3.8668 0.9026 0.6012 32 1 5.3354 -0.0569 0.9195 33 1 5.5051 -2.0996 5.7743 34 1 1.9239 -0.0076 2.1220 35 1 1.4151 -1.5771 1.4690 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261068986.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:48 Heat of formation + Delta-G solvation = -37.616469 kcal Electronic energy + Delta-G solvation = -15126.071690 eV Core-core repulsion = 12738.408930 eV Total energy + Delta-G solvation = -2387.662760 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.26760 -36.00074 -34.99881 -31.88875 -30.08007 -28.80646 -26.15915 -24.46243 -24.32028 -22.07474 -20.44959 -18.67780 -17.50278 -15.76721 -15.31614 -14.82913 -14.60126 -14.49203 -13.66054 -13.15689 -13.00186 -12.68858 -12.48346 -12.15127 -11.84517 -11.56307 -11.42027 -11.17658 -10.97006 -10.78237 -10.47670 -10.41316 -10.18214 -10.09376 -9.66226 -9.39508 -8.96122 -7.99242 -7.73505 -5.87147 -3.49202 3.35184 3.39106 3.43534 4.25755 4.43559 4.97046 5.07982 5.19369 5.37487 5.44773 5.59025 5.60687 5.72870 5.79415 5.83304 5.87914 5.94804 6.07732 6.10727 6.13504 6.23602 6.28771 6.33627 6.46231 6.48961 6.65042 6.89290 7.06862 7.09829 7.51091 7.60610 7.82765 8.52766 9.57360 10.27806 11.34221 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033780 B = 0.009112 C = 0.007678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.691972 B = 3071.977175 C = 3645.889619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.061 0.939 4 C -0.115 4.115 5 C 0.079 3.921 6 N -0.559 5.559 7 C 0.034 3.966 8 C 0.049 3.951 9 C 0.101 3.899 10 H 0.051 0.949 11 O -0.292 6.292 12 C -0.350 4.350 13 H 0.064 0.936 14 C 0.019 3.981 15 N -0.892 5.892 16 Si 0.921 3.079 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.106 4.106 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.013 0.987 28 H 0.018 0.982 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.255 0.745 34 H 0.065 0.935 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 3.915 -12.352 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.079 0.921 4 C -0.153 4.153 5 C -0.051 4.051 6 N -0.284 5.284 7 C -0.114 4.114 8 C -0.077 4.077 9 C 0.041 3.959 10 H 0.069 0.931 11 O -0.206 6.206 12 C -0.429 4.429 13 H 0.082 0.918 14 C -0.178 4.178 15 N -0.536 5.536 16 Si 0.749 3.251 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.144 4.144 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.031 0.969 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.594 3.549 -12.029 13.357 hybrid contribution 0.794 0.153 -0.054 0.811 sum -3.799 3.702 -12.084 13.197 Atomic orbital electron populations 1.21911 0.95580 1.01590 1.01102 1.20973 0.95164 0.99635 0.95087 0.92085 1.21594 0.95615 1.01355 0.96693 1.20918 0.91251 0.96132 0.96804 1.58773 1.02242 1.63977 1.03437 1.22320 0.92116 0.97072 0.99910 1.22585 1.02200 0.97838 0.85114 1.21528 0.90762 0.96366 0.87223 0.93115 1.85677 1.53616 1.58930 1.22403 1.20942 1.13020 1.15078 0.93869 0.91797 1.24935 0.99080 0.98972 0.94854 1.70034 1.42969 1.42259 0.98323 0.85945 0.80778 0.80376 0.78041 1.19908 1.21055 1.21025 1.21933 0.95927 1.00343 0.96191 0.92718 0.92850 0.93201 0.91819 0.90577 0.91921 0.96915 0.96318 0.91231 0.92139 0.94795 0.89834 0.93468 0.91650 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.80 37.16 0.33 -1.47 16 2 C -0.09 -1.34 2.20 -91.13 -0.20 -1.54 16 3 H 0.06 0.93 6.58 -51.93 -0.34 0.58 16 4 C -0.11 -1.61 5.16 -27.11 -0.14 -1.75 16 5 C 0.08 1.14 4.92 -6.74 -0.03 1.10 16 6 N -0.56 -9.51 4.19 -248.31 -1.04 -10.55 16 7 C 0.03 0.49 9.50 60.06 0.57 1.06 16 8 C 0.05 0.98 5.04 -4.51 -0.02 0.96 16 9 C 0.10 2.26 2.22 -27.41 -0.06 2.20 16 10 H 0.05 1.18 6.92 -51.92 -0.36 0.83 16 11 O -0.29 -8.42 9.31 -16.49 -0.15 -8.57 16 12 C -0.35 -10.36 9.58 30.88 0.30 -10.07 16 13 H 0.06 1.83 7.65 -52.49 -0.40 1.42 16 14 C 0.02 0.57 5.49 -17.51 -0.10 0.47 16 15 N -0.89 -28.33 13.67 55.48 0.76 -27.57 16 16 Si 0.92 22.49 29.55 -169.99 -5.02 17.47 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.11 -2.02 4.92 -25.69 -0.13 -2.14 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 24 H 0.06 0.74 7.68 -51.92 -0.40 0.35 16 25 H 0.08 1.19 7.12 -51.93 -0.37 0.82 16 26 H 0.06 0.80 7.98 -51.93 -0.41 0.38 16 27 H 0.01 0.18 7.54 -51.93 -0.39 -0.21 16 28 H 0.02 0.25 8.13 -51.92 -0.42 -0.17 16 29 H 0.07 1.05 7.72 -51.93 -0.40 0.65 16 30 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 31 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 32 H 0.08 1.85 7.25 -51.93 -0.38 1.48 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.13 7.99 -51.93 -0.41 0.71 16 LS Contribution 274.02 15.07 4.13 4.13 Total: -1.00 -32.29 274.02 -6.70 -38.99 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.88 Total: -2.71 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 0.51 Total: -11.19 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.28 Total: -38.12 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.15 Total: -8.57 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.29 -6.70 -38.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068986.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.369 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds