Wall clock time and date at job start Thu Apr 9 2020 14:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 108.74466 * 2 1 4 4 C 1.50752 * 108.85547 * 241.54527 * 2 1 3 5 5 C 1.54431 * 109.03532 * 146.18408 * 4 2 1 6 6 N 1.39781 * 111.70219 * 77.43388 * 5 4 2 7 7 C 1.46899 * 110.99968 * 170.82545 * 6 5 4 8 8 C 1.47646 * 114.75720 * 297.60238 * 6 5 4 9 9 C 1.50806 * 107.97677 * 82.93161 * 8 6 5 10 10 H 1.09008 * 109.05347 * 25.47433 * 9 8 6 11 11 O 1.42895 * 109.05558 * 144.37278 * 9 8 6 12 12 C 1.34923 * 117.00309 * 272.12050 * 11 9 8 13 13 H 1.07996 * 119.99766 * 359.97438 * 12 11 9 14 14 C 1.38637 * 120.00113 * 179.97438 * 12 11 9 15 15 N 1.31580 * 119.99974 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47264 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47249 * 119.99927 * 16 14 12 19 19 H 1.48504 * 109.46751 * 239.99505 * 16 14 12 20 20 C 1.53817 * 111.61921 * 264.92744 * 9 8 6 21 21 H 1.09003 * 109.47520 * 178.45250 * 1 2 3 22 22 H 1.08998 * 109.47612 * 298.45372 * 1 2 3 23 23 H 1.09002 * 109.47077 * 58.45035 * 1 2 3 24 24 H 1.09007 * 109.54504 * 26.31869 * 4 2 1 25 25 H 1.08998 * 109.61868 * 266.09837 * 4 2 1 26 26 H 1.09002 * 109.02459 * 197.98331 * 5 4 2 27 27 H 1.08999 * 109.02214 * 316.88287 * 5 4 2 28 28 H 1.09010 * 109.47059 * 56.04367 * 7 6 5 29 29 H 1.09007 * 109.46958 * 176.03974 * 7 6 5 30 30 H 1.08995 * 109.47451 * 296.04412 * 7 6 5 31 31 H 1.08994 * 109.78980 * 323.30423 * 8 6 5 32 32 H 1.09002 * 109.80852 * 202.56279 * 8 6 5 33 33 H 0.97000 * 119.99837 * 180.02562 * 15 14 12 34 34 H 1.09000 * 108.98057 * 280.31138 * 20 9 8 35 35 H 1.09004 * 108.91425 * 161.55104 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8802 1.0321 0.0000 4 6 2.0172 -0.6797 -1.2543 5 6 3.3277 -0.0058 -1.7158 6 7 4.4201 -0.4202 -0.9485 7 6 5.6826 0.0548 -1.5303 8 6 4.3361 -0.0742 0.4844 9 6 3.5003 -1.1263 1.1690 10 1 3.5565 -2.0529 0.5976 11 8 4.0215 -1.3562 2.4795 12 6 4.9970 -2.2809 2.5973 13 1 5.3488 -2.8089 1.7234 14 6 5.5478 -2.5531 3.8401 15 7 5.1195 -1.9094 4.9048 16 14 6.8978 -3.8338 4.0032 17 1 7.1971 -4.4104 2.6679 18 1 8.1210 -3.1964 4.5531 19 1 6.4480 -4.9133 4.9185 20 6 2.0282 -0.6952 1.2827 21 1 -0.3634 -1.0273 -0.0278 22 1 -0.3634 0.4896 0.9035 23 1 -0.3633 0.5377 -0.8758 24 1 1.2636 -0.5855 -2.0363 25 1 2.2015 -1.7346 -1.0509 26 1 3.5098 -0.2607 -2.7599 27 1 3.2214 1.0754 -1.6277 28 1 5.6488 1.1393 -1.6356 29 1 6.5103 -0.2212 -0.8768 30 1 5.8255 -0.4010 -2.5100 31 1 3.8668 0.9026 0.6012 32 1 5.3354 -0.0569 0.9195 33 1 5.5051 -2.0996 5.7743 34 1 1.9239 -0.0076 2.1220 35 1 1.4151 -1.5771 1.4690 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068986.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:48 Heat of formation + Delta-G solvation = -59.779781 kcal Electronic energy + Delta-G solvation = -15127.032763 eV Core-core repulsion = 12738.408930 eV Total energy + Delta-G solvation = -2388.623834 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70060 -37.93841 -36.28784 -34.02297 -31.79214 -29.99147 -27.59413 -26.62822 -25.58465 -23.53303 -21.79108 -20.15868 -19.68038 -17.56404 -16.68252 -16.46983 -16.15792 -15.91180 -15.36105 -14.74354 -14.40081 -14.15639 -14.00022 -13.43051 -13.41533 -13.12676 -12.91087 -12.66849 -12.53256 -12.44089 -12.13426 -11.91719 -11.63254 -11.42717 -11.27877 -11.19710 -10.93407 -10.14255 -9.12414 -8.14497 -5.82185 1.39130 1.44372 1.55498 2.33694 2.97344 3.19175 3.62344 3.86705 3.94208 4.07479 4.17232 4.28796 4.45489 4.51687 4.55809 4.66352 4.69941 4.71477 4.77573 4.92390 4.98348 4.99297 5.05378 5.13316 5.22231 5.25111 5.31331 5.43407 5.45045 5.58718 6.12597 6.26491 6.56292 7.29384 8.12156 9.10699 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033780 B = 0.009112 C = 0.007678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.691972 B = 3071.977175 C = 3645.889619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.061 0.939 4 C -0.112 4.112 5 C 0.073 3.927 6 N -0.571 5.571 7 C 0.033 3.967 8 C 0.064 3.936 9 C 0.097 3.903 10 H 0.037 0.963 11 O -0.334 6.334 12 C -0.360 4.360 13 H 0.066 0.934 14 C -0.045 4.045 15 N -0.942 5.942 16 Si 1.001 2.999 17 H -0.259 1.259 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.102 4.102 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.021 0.979 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.259 0.741 34 H 0.046 0.954 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 3.783 -14.529 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.056 4.056 6 N -0.296 5.296 7 C -0.114 4.114 8 C -0.064 4.064 9 C 0.038 3.962 10 H 0.055 0.945 11 O -0.249 6.249 12 C -0.439 4.439 13 H 0.084 0.916 14 C -0.238 4.238 15 N -0.587 5.587 16 Si 0.823 3.177 17 H -0.183 1.183 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.140 4.140 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.095 0.905 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.706 3.427 -14.248 15.392 hybrid contribution 0.770 0.235 0.554 0.977 sum -3.937 3.662 -13.695 14.712 Atomic orbital electron populations 1.21879 0.93264 1.02244 1.02332 1.20927 0.97030 0.98934 0.93224 0.92009 1.21617 0.96507 0.99845 0.97008 1.21079 0.90368 0.96585 0.97586 1.58752 1.04279 1.64699 1.01883 1.22376 0.90391 0.98150 1.00498 1.22205 0.99747 0.97110 0.87311 1.21832 0.92892 0.96649 0.84808 0.94485 1.85605 1.53836 1.59081 1.26384 1.21298 1.13210 1.15132 0.94252 0.91591 1.26157 1.01893 1.01496 0.94225 1.70203 1.44993 1.44486 0.99041 0.84758 0.77074 0.77172 0.78669 1.18325 1.20117 1.20178 1.21944 0.93710 1.00033 0.98290 0.92457 0.93100 0.90452 0.88392 0.92517 0.89280 0.96124 0.94944 0.92753 0.89585 0.94253 0.92871 0.93260 0.93548 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.80 71.98 0.63 -2.50 16 2 C -0.08 -2.34 2.20 -11.13 -0.02 -2.36 16 3 H 0.06 1.76 6.58 -2.39 -0.02 1.74 16 4 C -0.11 -2.85 5.16 30.35 0.16 -2.70 16 5 C 0.07 1.89 4.92 88.07 0.43 2.32 16 6 N -0.57 -18.72 4.19 -939.53 -3.93 -22.66 16 7 C 0.03 0.90 9.50 127.69 1.21 2.11 16 8 C 0.06 2.59 5.04 85.45 0.43 3.02 16 9 C 0.10 4.49 2.22 30.16 0.07 4.56 16 10 H 0.04 1.79 6.92 -2.38 -0.02 1.77 16 11 O -0.33 -20.12 9.31 -81.92 -0.76 -20.88 16 12 C -0.36 -21.99 9.58 67.92 0.65 -21.34 16 13 H 0.07 3.87 7.65 -2.91 -0.02 3.84 16 14 C -0.05 -2.76 5.49 84.83 0.47 -2.29 16 15 N -0.94 -61.49 13.67 21.61 0.30 -61.19 16 16 Si 1.00 46.65 29.55 68.60 2.03 48.68 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 C -0.10 -3.96 4.92 31.27 0.15 -3.80 16 21 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 24 H 0.10 1.86 7.68 -2.38 -0.02 1.84 16 25 H 0.06 1.69 7.12 -2.39 -0.02 1.67 16 26 H 0.09 1.90 7.98 -2.39 -0.02 1.88 16 27 H 0.02 0.52 7.54 -2.39 -0.02 0.51 16 28 H 0.03 0.79 8.13 -2.38 -0.02 0.77 16 29 H 0.05 1.63 7.72 -2.38 -0.02 1.61 16 30 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 31 H 0.04 1.53 6.66 -2.39 -0.02 1.51 16 32 H 0.05 2.46 7.25 -2.39 -0.02 2.44 16 33 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 2.09 7.99 -2.38 -0.02 2.07 16 Total: -1.00 -71.78 274.02 2.84 -68.94 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.04 Total: 10.08 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 4.18 Total: -22.96 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -3.64 Total: -83.85 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.76 Total: -20.88 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -71.78 2.84 -68.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068986.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.163 kcal (2) G-P(sol) polarization free energy of solvation -71.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds