Wall clock time and date at job start Thu Apr 9 2020 14:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46416 * 2 1 4 4 C 1.53034 * 109.46098 * 240.02135 * 2 1 3 5 5 C 1.53124 * 109.27550 * 180.81518 * 4 2 1 6 6 H 1.09008 * 109.52191 * 177.61933 * 5 4 2 7 7 O 1.42899 * 109.52448 * 297.74796 * 5 4 2 8 8 C 1.34925 * 116.99871 * 209.99922 * 7 5 4 9 9 H 1.07997 * 119.99960 * 0.02562 * 8 7 5 10 10 C 1.38635 * 119.99769 * 180.02562 * 8 7 5 11 11 N 1.31588 * 120.00081 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00025 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46807 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47141 * 300.00110 * 12 10 8 15 15 H 1.48498 * 109.47018 * 60.00157 * 12 10 8 16 16 C 1.53119 * 109.15978 * 57.65705 * 5 4 2 17 17 C 1.53036 * 109.27856 * 302.34329 * 16 5 4 18 18 H 1.09006 * 109.45319 * 299.17289 * 17 16 5 19 19 C 1.52994 * 109.46468 * 179.19624 * 17 16 5 20 20 N 1.46842 * 109.45156 * 119.97369 * 2 1 3 21 21 C 1.46897 * 111.00283 * 305.84826 * 20 2 1 22 22 H 1.09001 * 109.46991 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46815 * 299.98082 * 1 2 3 24 24 H 1.09001 * 109.46899 * 59.97508 * 1 2 3 25 25 H 1.09003 * 109.50562 * 60.87678 * 4 2 1 26 26 H 1.08999 * 109.50374 * 300.75653 * 4 2 1 27 27 H 0.97001 * 119.99805 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.50279 * 62.28406 * 16 5 4 29 29 H 1.09000 * 109.50245 * 182.40616 * 16 5 4 30 30 H 1.09003 * 109.47041 * 299.94773 * 19 17 16 31 31 H 1.09003 * 109.47294 * 59.94285 * 19 17 16 32 32 H 1.09003 * 109.47193 * 179.97438 * 19 17 16 33 33 H 1.09001 * 109.47216 * 60.00188 * 21 20 2 34 34 H 1.09004 * 109.47579 * 179.97438 * 21 20 2 35 35 H 1.08998 * 109.47392 * 300.00621 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5710 -0.7364 -1.2353 6 1 3.9380 -1.2858 -2.1023 7 8 4.0625 0.6048 -1.2768 8 6 5.2562 0.8015 -1.8741 9 1 5.7943 -0.0354 -2.2940 10 6 5.7919 2.0780 -1.9488 11 7 5.1364 3.0976 -1.4367 12 14 7.4450 2.3503 -2.7751 13 1 7.7921 3.7933 -2.7241 14 1 8.4875 1.5646 -2.0674 15 1 7.3691 1.9097 -4.1912 16 6 4.0546 -1.4192 0.0470 17 6 3.4863 -0.6780 1.2593 18 1 3.8403 0.3530 1.2532 19 6 3.9506 -1.3689 2.5430 20 7 2.0190 -0.6918 1.1994 21 6 1.4371 -0.1105 2.4165 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5135 0.8902 24 1 -0.3633 0.5142 -0.8898 25 1 1.6897 -0.1982 -2.1399 26 1 1.6657 -1.7447 -1.2575 27 1 5.5115 3.9907 -1.4887 28 1 3.7121 -2.4539 0.0597 29 1 5.1437 -1.3952 0.0836 30 1 3.5963 -2.3997 2.5493 31 1 5.0397 -1.3588 2.5875 32 1 3.5463 -0.8408 3.4065 33 1 0.3515 -0.2009 2.3792 34 1 1.8156 -0.6417 3.2899 35 1 1.7118 0.9422 2.4837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261071028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:49 Heat of formation + Delta-G solvation = -60.073107 kcal Electronic energy + Delta-G solvation = -15364.931796 eV Core-core repulsion = 12976.295243 eV Total energy + Delta-G solvation = -2388.636553 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.64357 -37.83247 -34.49341 -34.29031 -32.75462 -29.34427 -27.32475 -27.04770 -26.50909 -22.30010 -21.99545 -20.61931 -19.37910 -17.20906 -16.77804 -16.58085 -15.93830 -15.85044 -15.48021 -14.59996 -14.38331 -13.91293 -13.67573 -13.38688 -13.11494 -12.94003 -12.90165 -12.67008 -12.58605 -12.36496 -12.33238 -12.13046 -12.06857 -11.60169 -11.36778 -11.01346 -10.78318 -10.08346 -9.22946 -8.15958 -5.82983 1.36466 1.43820 1.50570 2.32466 2.98542 3.16801 3.70771 3.95040 4.02641 4.10050 4.16912 4.38727 4.46448 4.56577 4.61500 4.69095 4.69580 4.77935 4.86061 4.88838 4.96016 5.03631 5.09964 5.16384 5.17425 5.24007 5.29633 5.31583 5.36705 5.52613 6.21205 6.22202 6.28657 7.27810 8.12080 9.08755 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036684 B = 0.009377 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.101407 B = 2985.330711 C = 3194.835471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.085 3.915 3 H 0.001 0.999 4 C -0.096 4.096 5 C 0.075 3.925 6 H 0.036 0.964 7 O -0.320 6.320 8 C -0.367 4.367 9 H 0.068 0.932 10 C -0.044 4.044 11 N -0.941 5.941 12 Si 0.999 3.001 13 H -0.281 1.281 14 H -0.265 1.265 15 H -0.265 1.265 16 C -0.118 4.118 17 C 0.088 3.912 18 H -0.001 1.001 19 C -0.135 4.135 20 N -0.523 5.523 21 C 0.016 3.984 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.257 0.743 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.152 -9.433 5.416 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.024 4.024 3 H 0.019 0.981 4 C -0.134 4.134 5 C 0.016 3.984 6 H 0.054 0.946 7 O -0.236 6.236 8 C -0.446 4.446 9 H 0.085 0.915 10 C -0.236 4.236 11 N -0.587 5.587 12 Si 0.821 3.179 13 H -0.206 1.206 14 H -0.190 1.190 15 H -0.189 1.189 16 C -0.156 4.156 17 C -0.021 4.021 18 H 0.017 0.983 19 C -0.192 4.192 20 N -0.248 5.248 21 C -0.132 4.132 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -6.399 -9.620 5.485 12.790 hybrid contribution 1.350 1.372 -0.567 2.007 sum -5.049 -8.247 4.919 10.849 Atomic orbital electron populations 1.21842 0.92063 1.03184 1.02088 1.21456 0.96407 0.94087 0.90441 0.98106 1.21652 0.93186 1.01587 0.96934 1.22221 0.94734 0.85364 0.96052 0.94611 1.85644 1.35820 1.24265 1.77840 1.21296 0.95902 0.93975 1.33426 0.91474 1.26116 1.03162 0.94389 0.99949 1.70198 1.40436 0.99371 1.48665 0.84919 0.76980 0.77355 0.78625 1.20626 1.19029 1.18949 1.21984 0.99270 0.99612 0.94721 1.21392 0.87678 0.96643 0.96381 0.98318 1.21844 1.00754 1.01412 0.95191 1.62163 1.06297 1.53937 1.02383 1.22594 1.01335 0.96337 0.92911 0.90276 0.91777 0.92178 0.92548 0.88362 0.93407 0.89308 0.93385 0.90356 0.92544 0.91666 0.89214 0.89432 0.97961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 8.77 71.98 0.63 -3.10 16 2 C 0.08 3.16 2.31 44.94 0.10 3.27 16 3 H 0.00 0.04 7.76 -2.39 -0.02 0.02 16 4 C -0.10 -3.64 5.10 30.65 0.16 -3.48 16 5 C 0.07 3.38 2.98 30.68 0.09 3.47 16 6 H 0.04 1.60 7.80 -2.38 -0.02 1.58 16 7 O -0.32 -18.81 8.28 -81.94 -0.68 -19.48 16 8 C -0.37 -22.07 9.78 67.91 0.66 -21.41 16 9 H 0.07 3.79 7.64 -2.91 -0.02 3.77 16 10 C -0.04 -2.64 5.49 84.82 0.47 -2.17 16 11 N -0.94 -61.42 13.68 21.61 0.30 -61.13 16 12 Si 1.00 46.30 29.55 68.60 2.03 48.33 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 16 C -0.12 -4.63 5.07 30.65 0.16 -4.47 16 17 C 0.09 3.36 2.31 44.93 0.10 3.46 16 18 H 0.00 -0.07 7.76 -2.38 -0.02 -0.08 16 19 C -0.13 -3.92 8.77 71.98 0.63 -3.29 16 20 N -0.52 -17.73 4.58 -871.93 -3.99 -21.73 16 21 C 0.02 0.45 8.64 127.69 1.10 1.55 16 22 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.06 1.61 6.32 -2.39 -0.02 1.60 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.71 6.23 -2.39 -0.01 1.69 16 33 H 0.09 2.11 6.21 -2.39 -0.01 2.10 16 34 H 0.09 2.11 5.96 -2.38 -0.01 2.09 16 35 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 Total: -1.00 -71.85 273.92 2.79 -69.06 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.04 Total: 11.12 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 4.11 Total: -26.16 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -3.70 Total: -82.85 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.68 Total: -19.48 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -71.85 2.79 -69.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.986 kcal (2) G-P(sol) polarization free energy of solvation -71.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds