Wall clock time and date at job start Thu Apr 9 2020 14:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47490 * 2 1 4 4 C 1.46895 * 111.00206 * 163.88107 * 3 2 1 5 5 C 1.50705 * 109.46731 * 293.95249 * 4 3 2 6 6 H 1.07994 * 120.00121 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99473 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00303 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47594 * 270.00535 * 9 7 5 11 11 H 1.48507 * 109.47010 * 30.00177 * 9 7 5 12 12 H 1.48499 * 109.47154 * 150.00187 * 9 7 5 13 13 C 1.46899 * 111.00147 * 287.83878 * 3 2 1 14 14 C 1.53002 * 109.47367 * 160.31692 * 13 3 2 15 15 C 1.52999 * 109.47016 * 185.00092 * 14 13 3 16 16 C 1.53000 * 109.46993 * 179.97438 * 15 14 13 17 17 H 1.08995 * 115.71834 * 29.42000 * 16 15 14 18 18 C 1.53001 * 117.77397 * 176.36018 * 16 15 14 19 19 O 1.42893 * 117.77551 * 242.47057 * 16 15 14 20 20 H 1.08996 * 109.47440 * 178.92610 * 1 2 3 21 21 H 1.08997 * 109.47052 * 298.93331 * 1 2 3 22 22 H 1.09005 * 109.46703 * 58.92488 * 1 2 3 23 23 H 1.09006 * 109.46742 * 239.99967 * 2 1 3 24 24 H 1.09001 * 109.46504 * 120.00136 * 2 1 3 25 25 H 1.09003 * 109.47409 * 173.95744 * 4 3 2 26 26 H 1.08997 * 109.46934 * 53.95148 * 4 3 2 27 27 H 0.96999 * 119.99810 * 359.97438 * 8 7 5 28 28 H 1.09003 * 109.46644 * 280.31414 * 13 3 2 29 29 H 1.09006 * 109.47465 * 40.30971 * 13 3 2 30 30 H 1.09001 * 109.47058 * 304.99792 * 14 13 3 31 31 H 1.08995 * 109.46885 * 65.00181 * 14 13 3 32 32 H 1.08997 * 109.47517 * 300.00227 * 15 14 13 33 33 H 1.09006 * 109.46855 * 59.99972 * 15 14 13 34 34 H 1.08995 * 117.77879 * 213.68646 * 18 16 15 35 35 H 1.09004 * 117.77019 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4374 1.4420 0.3807 5 6 3.5899 1.0078 1.8158 6 1 2.7208 0.7180 2.3876 7 6 4.8393 0.9796 2.3983 8 7 5.8978 1.3320 1.7019 9 14 5.0285 0.4407 4.1769 10 1 4.9130 1.6234 5.0675 11 1 3.9637 -0.5382 4.5135 12 1 6.3592 -0.1916 4.3636 13 6 1.7992 2.0213 -1.3055 14 6 1.8499 3.5422 -1.1466 15 6 1.4973 4.2063 -2.4791 16 6 1.5474 5.7271 -2.3200 17 1 2.2479 6.1018 -1.5737 18 6 1.3079 6.5826 -3.5657 19 8 0.3365 6.4581 -2.5227 20 1 -0.3634 -1.0274 -0.0193 21 1 -0.3633 0.4972 0.8994 22 1 -0.3633 0.5305 -0.8802 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 3.8027 2.4630 0.2693 26 1 4.0135 0.7776 -0.2631 27 1 5.7995 1.6115 0.7782 28 1 2.5758 1.7026 -2.0008 29 1 0.8230 1.7287 -1.6921 30 1 1.1338 3.8521 -0.3855 31 1 2.8534 3.8427 -0.8452 32 1 2.2134 3.8964 -3.2402 33 1 0.4938 3.9056 -2.7805 34 1 1.8486 7.5255 -3.6461 35 1 1.1128 6.0669 -4.5061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388746668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:32 Heat of formation + Delta-G solvation = -25.099353 kcal Electronic energy + Delta-G solvation = -14251.173360 eV Core-core repulsion = 11864.053383 eV Total energy + Delta-G solvation = -2387.119977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.29122 -37.35234 -33.66942 -32.74757 -29.97717 -27.84016 -25.99618 -24.64668 -22.56260 -22.01520 -20.97142 -19.78124 -16.86813 -16.53684 -15.69533 -15.17370 -14.83817 -14.36880 -13.85937 -13.73394 -13.57365 -12.93034 -12.23322 -12.06929 -11.76357 -11.45456 -11.23608 -11.15809 -10.99477 -10.72853 -10.61040 -10.48612 -10.24266 -10.09976 -9.99276 -9.83696 -8.62855 -8.35158 -7.30251 -6.35509 -4.03770 3.43432 3.45514 3.48594 3.64539 4.11181 4.51564 4.58735 4.80969 4.97579 5.04228 5.35081 5.40172 5.44303 5.49837 5.60999 5.74052 5.84044 5.88636 5.97044 6.04872 6.07085 6.13954 6.32771 6.51332 6.64661 6.70019 6.75386 7.05827 7.12708 7.85897 8.04600 8.35877 8.61786 8.89368 9.66746 11.03675 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029641 B = 0.006565 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.396429 B = 4264.182353 C = 4885.283320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 N -0.532 5.532 4 C 0.181 3.819 5 C -0.587 4.587 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 1.074 2.926 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.286 1.286 13 C 0.054 3.946 14 C -0.110 4.110 15 C -0.106 4.106 16 C -0.001 4.001 17 H 0.126 0.874 18 C -0.047 4.047 19 O -0.361 6.361 20 H 0.047 0.953 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.015 0.985 24 H 0.086 0.914 25 H 0.023 0.977 26 H -0.022 1.022 27 H 0.266 0.734 28 H 0.022 0.978 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 4.239 -8.968 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 N -0.256 5.256 4 C 0.056 3.944 5 C -0.626 4.626 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.553 5.553 9 Si 0.903 3.097 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.075 4.075 14 C -0.148 4.148 15 C -0.144 4.144 16 C -0.058 4.058 17 H 0.144 0.856 18 C -0.123 4.123 19 O -0.281 6.281 20 H 0.066 0.934 21 H 0.078 0.922 22 H 0.063 0.937 23 H 0.033 0.967 24 H 0.104 0.896 25 H 0.040 0.960 26 H -0.005 1.005 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.997 4.332 -7.277 10.985 hybrid contribution -0.752 -0.062 -1.873 2.019 sum -7.748 4.270 -9.150 12.728 Atomic orbital electron populations 1.21806 0.96539 1.00154 1.01647 1.21957 0.94167 0.90202 1.00822 1.62013 1.21983 1.16125 1.25475 1.19859 0.82343 0.95776 0.96446 1.22022 0.95572 1.48225 0.96747 0.92460 1.25841 0.92096 0.95119 1.05949 1.70769 1.31264 1.42205 1.11037 0.83465 0.75537 0.76458 0.74272 1.21441 1.21477 1.21132 1.22060 0.99529 0.94306 0.91618 1.21516 1.02635 0.94986 0.95638 1.21520 1.02672 0.90725 0.99503 1.23922 0.90023 0.92723 0.99090 0.85645 1.24352 0.96313 1.01940 0.89668 1.91689 1.27203 1.69062 1.40184 0.93361 0.92249 0.93659 0.96667 0.89581 0.95951 1.00458 0.92351 0.95935 0.92047 0.91074 0.91437 0.90363 0.91067 0.87431 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 10.00 37.16 0.37 -1.96 16 2 C 0.06 1.13 5.52 -3.82 -0.02 1.11 16 3 N -0.53 -11.60 4.38 -236.06 -1.03 -12.63 16 4 C 0.18 4.70 3.86 -4.98 -0.02 4.68 16 5 C -0.59 -16.71 8.28 -34.44 -0.29 -16.99 16 6 H 0.06 1.64 7.26 -52.49 -0.38 1.26 16 7 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 8 N -0.92 -27.91 13.65 55.43 0.76 -27.16 16 9 Si 1.07 25.47 29.90 -169.99 -5.08 20.39 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.05 0.95 4.83 -3.82 -0.02 0.94 16 14 C -0.11 -1.78 5.21 -26.73 -0.14 -1.91 16 15 C -0.11 -1.35 5.63 -26.73 -0.15 -1.50 16 16 C 0.00 -0.01 6.60 -26.73 -0.18 -0.18 16 17 H 0.13 1.47 8.08 -51.93 -0.42 1.05 16 18 C -0.05 -0.48 11.42 37.16 0.42 -0.05 16 19 O -0.36 -5.31 14.48 -35.23 -0.51 -5.82 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 22 H 0.04 0.68 6.52 -51.93 -0.34 0.34 16 23 H 0.02 0.29 8.05 -51.93 -0.42 -0.12 16 24 H 0.09 1.91 6.59 -51.93 -0.34 1.57 16 25 H 0.02 0.60 6.58 -51.93 -0.34 0.26 16 26 H -0.02 -0.61 7.99 -51.93 -0.41 -1.03 16 27 H 0.27 8.08 7.22 -40.82 -0.29 7.78 16 28 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 29 H 0.06 0.99 6.24 -51.93 -0.32 0.66 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.18 6.95 -51.93 -0.36 0.82 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 287.00 15.07 4.33 4.33 Total: -1.00 -31.61 287.00 -7.46 -39.07 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.81 Total: -2.59 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -0.11 Total: -15.59 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.28 Total: -39.79 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.51 Total: -5.82 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.61 -7.46 -39.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388746668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.972 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds