Wall clock time and date at job start Thu Apr 9 2020 14:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47490 * 2 1 4 4 C 1.46895 * 111.00206 * 163.88107 * 3 2 1 5 5 C 1.50705 * 109.46731 * 293.95249 * 4 3 2 6 6 H 1.07994 * 120.00121 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99473 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00303 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47594 * 270.00535 * 9 7 5 11 11 H 1.48507 * 109.47010 * 30.00177 * 9 7 5 12 12 H 1.48499 * 109.47154 * 150.00187 * 9 7 5 13 13 C 1.46899 * 111.00147 * 287.83878 * 3 2 1 14 14 C 1.53002 * 109.47367 * 160.31692 * 13 3 2 15 15 C 1.52999 * 109.47016 * 185.00092 * 14 13 3 16 16 C 1.53000 * 109.46993 * 179.97438 * 15 14 13 17 17 H 1.08995 * 115.71834 * 29.42000 * 16 15 14 18 18 C 1.53001 * 117.77397 * 176.36018 * 16 15 14 19 19 O 1.42893 * 117.77551 * 242.47057 * 16 15 14 20 20 H 1.08996 * 109.47440 * 178.92610 * 1 2 3 21 21 H 1.08997 * 109.47052 * 298.93331 * 1 2 3 22 22 H 1.09005 * 109.46703 * 58.92488 * 1 2 3 23 23 H 1.09006 * 109.46742 * 239.99967 * 2 1 3 24 24 H 1.09001 * 109.46504 * 120.00136 * 2 1 3 25 25 H 1.09003 * 109.47409 * 173.95744 * 4 3 2 26 26 H 1.08997 * 109.46934 * 53.95148 * 4 3 2 27 27 H 0.96999 * 119.99810 * 359.97438 * 8 7 5 28 28 H 1.09003 * 109.46644 * 280.31414 * 13 3 2 29 29 H 1.09006 * 109.47465 * 40.30971 * 13 3 2 30 30 H 1.09001 * 109.47058 * 304.99792 * 14 13 3 31 31 H 1.08995 * 109.46885 * 65.00181 * 14 13 3 32 32 H 1.08997 * 109.47517 * 300.00227 * 15 14 13 33 33 H 1.09006 * 109.46855 * 59.99972 * 15 14 13 34 34 H 1.08995 * 117.77879 * 213.68646 * 18 16 15 35 35 H 1.09004 * 117.77019 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4374 1.4420 0.3807 5 6 3.5899 1.0078 1.8158 6 1 2.7208 0.7180 2.3876 7 6 4.8393 0.9796 2.3983 8 7 5.8978 1.3320 1.7019 9 14 5.0285 0.4407 4.1769 10 1 4.9130 1.6234 5.0675 11 1 3.9637 -0.5382 4.5135 12 1 6.3592 -0.1916 4.3636 13 6 1.7992 2.0213 -1.3055 14 6 1.8499 3.5422 -1.1466 15 6 1.4973 4.2063 -2.4791 16 6 1.5474 5.7271 -2.3200 17 1 2.2479 6.1018 -1.5737 18 6 1.3079 6.5826 -3.5657 19 8 0.3365 6.4581 -2.5227 20 1 -0.3634 -1.0274 -0.0193 21 1 -0.3633 0.4972 0.8994 22 1 -0.3633 0.5305 -0.8802 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 3.8027 2.4630 0.2693 26 1 4.0135 0.7776 -0.2631 27 1 5.7995 1.6115 0.7782 28 1 2.5758 1.7026 -2.0008 29 1 0.8230 1.7287 -1.6921 30 1 1.1338 3.8521 -0.3855 31 1 2.8534 3.8427 -0.8452 32 1 2.2134 3.8964 -3.2402 33 1 0.4938 3.9056 -2.7805 34 1 1.8486 7.5255 -3.6461 35 1 1.1128 6.0669 -4.5061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388746668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:32 Heat of formation + Delta-G solvation = -47.131704 kcal Electronic energy + Delta-G solvation = -14252.128755 eV Core-core repulsion = 11864.053383 eV Total energy + Delta-G solvation = -2388.075372 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24726 -39.02482 -35.33459 -34.53266 -31.52457 -29.37495 -27.44489 -25.97972 -24.55722 -23.27529 -22.06508 -21.42655 -18.98452 -17.49403 -16.89382 -16.61359 -16.16996 -15.81556 -15.61572 -15.30771 -15.06905 -14.54868 -13.72413 -13.56231 -13.35466 -12.90801 -12.77001 -12.63901 -12.46260 -12.37097 -12.06744 -11.95988 -11.90019 -11.43467 -11.35459 -11.03125 -10.72745 -10.55312 -9.09602 -8.67113 -6.37178 1.53213 1.62140 1.80276 2.53751 2.56497 3.10271 3.16261 3.27934 3.77192 3.94412 4.00325 4.15758 4.17141 4.31641 4.48001 4.55128 4.60738 4.62169 4.68004 4.78044 4.83061 4.88869 4.91741 5.01268 5.03661 5.19041 5.27411 5.35362 5.37116 5.83234 6.02509 6.42974 6.44747 6.68515 7.42597 8.71713 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029641 B = 0.006565 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.396429 B = 4264.182353 C = 4885.283320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.053 3.947 3 N -0.543 5.543 4 C 0.194 3.806 5 C -0.598 4.598 6 H 0.052 0.948 7 C -0.037 4.037 8 N -0.938 5.938 9 Si 1.122 2.878 10 H -0.274 1.274 11 H -0.271 1.271 12 H -0.282 1.282 13 C 0.053 3.947 14 C -0.103 4.103 15 C -0.093 4.093 16 C -0.017 4.017 17 H 0.124 0.876 18 C -0.027 4.027 19 O -0.401 6.401 20 H 0.074 0.926 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.020 0.980 24 H 0.057 0.943 25 H 0.006 0.994 26 H -0.047 1.047 27 H 0.254 0.746 28 H 0.021 0.979 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 4.262 -9.593 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 N -0.267 5.267 4 C 0.067 3.933 5 C -0.637 4.637 6 H 0.070 0.930 7 C -0.234 4.234 8 N -0.576 5.576 9 Si 0.943 3.057 10 H -0.199 1.199 11 H -0.195 1.195 12 H -0.208 1.208 13 C -0.075 4.075 14 C -0.141 4.141 15 C -0.131 4.131 16 C -0.073 4.073 17 H 0.142 0.858 18 C -0.102 4.102 19 O -0.323 6.323 20 H 0.093 0.907 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.024 0.976 26 H -0.030 1.030 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.172 4.361 -7.930 12.194 hybrid contribution -0.421 -0.055 -1.759 1.809 sum -8.593 4.306 -9.689 13.648 Atomic orbital electron populations 1.21708 0.93113 1.02091 1.01996 1.22013 0.96889 0.88928 0.99631 1.61999 1.18931 1.17604 1.28195 1.19549 0.84751 0.93900 0.95059 1.22328 0.95515 1.47877 0.97941 0.93003 1.27373 0.91885 0.94435 1.09726 1.70898 1.32047 1.43955 1.10711 0.82865 0.76129 0.77006 0.69671 1.19928 1.19546 1.20758 1.22186 1.00721 0.94939 0.89644 1.21421 1.00961 0.94204 0.97498 1.21394 1.03380 0.90784 0.97551 1.23909 0.89532 0.92584 1.01301 0.85833 1.24838 0.93725 1.02341 0.89263 1.91658 1.28609 1.69690 1.42319 0.90732 0.93045 0.92015 0.96185 0.92489 0.97585 1.02971 0.93709 0.96027 0.89480 0.92630 0.93568 0.88477 0.90485 0.85169 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 10.00 71.98 0.72 -3.26 16 2 C 0.05 2.11 5.52 86.31 0.48 2.58 16 3 N -0.54 -23.84 4.38 -900.77 -3.95 -27.79 16 4 C 0.19 10.39 3.86 85.56 0.33 10.72 16 5 C -0.60 -34.77 8.28 25.60 0.21 -34.56 16 6 H 0.05 3.01 7.26 -2.91 -0.02 2.99 16 7 C -0.04 -2.16 5.46 84.66 0.46 -1.70 16 8 N -0.94 -58.36 13.65 21.45 0.29 -58.07 16 9 Si 1.12 51.05 29.90 68.60 2.05 53.10 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.05 1.85 4.83 86.30 0.42 2.27 16 14 C -0.10 -3.31 5.21 30.59 0.16 -3.15 16 15 C -0.09 -2.22 5.63 30.59 0.17 -2.04 16 16 C -0.02 -0.39 6.60 30.59 0.20 -0.19 16 17 H 0.12 2.88 8.08 -2.39 -0.02 2.86 16 18 C -0.03 -0.47 11.42 71.98 0.82 0.35 16 19 O -0.40 -11.28 14.48 -148.98 -2.16 -13.44 16 20 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 22 H 0.06 1.66 6.52 -2.38 -0.02 1.64 16 23 H 0.02 0.76 8.05 -2.38 -0.02 0.74 16 24 H 0.06 2.56 6.59 -2.39 -0.02 2.54 16 25 H 0.01 0.35 6.58 -2.39 -0.02 0.33 16 26 H -0.05 -2.71 7.99 -2.39 -0.02 -2.73 16 27 H 0.25 15.96 7.22 -92.71 -0.67 15.29 16 28 H 0.02 0.76 8.00 -2.39 -0.02 0.74 16 29 H 0.09 2.60 6.24 -2.38 -0.01 2.59 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.66 6.95 -2.39 -0.02 1.65 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.77 8.13 -2.38 -0.02 1.75 16 34 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -69.21 287.00 1.35 -67.86 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.14 Total: 7.30 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 3.97 Total: -28.97 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -3.65 Total: -85.86 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -2.16 Total: -13.44 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal Total: -69.21 1.35 -67.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388746668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.728 kcal (2) G-P(sol) polarization free energy of solvation -69.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds