Wall clock time and date at job start Thu Apr 9 2020 14:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00446 * 2 1 4 4 C 1.52995 * 110.43534 * 64.66351 * 3 2 1 5 5 N 1.46498 * 109.47315 * 62.65247 * 4 3 2 6 6 C 1.46500 * 119.99952 * 94.30912 * 5 4 3 7 7 C 1.36935 * 119.99815 * 274.31081 * 5 4 3 8 8 H 1.07991 * 120.00343 * 1.97764 * 7 5 4 9 9 C 1.38811 * 119.99552 * 181.98099 * 7 5 4 10 10 N 1.31620 * 120.00297 * 10.60206 * 9 7 5 11 11 Si 1.86803 * 119.99843 * 190.60597 * 9 7 5 12 12 H 1.48499 * 109.47241 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47369 * 119.99751 * 11 9 7 14 14 H 1.48504 * 109.47002 * 239.99601 * 11 9 7 15 15 C 1.54894 * 110.48283 * 302.12080 * 3 2 1 16 16 C 1.55230 * 102.59125 * 279.18796 * 15 3 2 17 17 C 1.54270 * 104.23085 * 322.08804 * 16 15 3 18 18 C 1.53869 * 106.60010 * 23.60687 * 17 16 15 19 19 H 1.08996 * 109.47464 * 186.81392 * 1 2 3 20 20 H 1.09004 * 109.47190 * 306.81770 * 1 2 3 21 21 H 1.09002 * 109.46853 * 66.81190 * 1 2 3 22 22 H 1.08999 * 109.47329 * 182.65411 * 4 3 2 23 23 H 1.09000 * 109.47428 * 302.65162 * 4 3 2 24 24 H 1.09000 * 109.47401 * 354.76121 * 6 5 4 25 25 H 1.09003 * 109.47322 * 114.76199 * 6 5 4 26 26 H 1.09001 * 109.47162 * 234.76684 * 6 5 4 27 27 H 0.97007 * 119.99459 * 179.97438 * 10 9 7 28 28 H 1.09006 * 110.75472 * 37.58262 * 15 3 2 29 29 H 1.09001 * 110.75277 * 160.94522 * 15 3 2 30 30 H 1.08997 * 110.47306 * 203.39285 * 16 15 3 31 31 H 1.09005 * 110.46669 * 80.77345 * 16 15 3 32 32 H 1.09006 * 110.02900 * 264.32571 * 17 16 15 33 33 H 1.09001 * 110.03444 * 142.89735 * 17 16 15 34 34 H 1.09004 * 110.03132 * 240.71792 * 18 17 16 35 35 H 1.09003 * 110.03274 * 119.28941 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6671 2.0430 1.2958 5 7 2.2420 1.3228 2.4346 6 6 3.5552 1.7079 2.9575 7 6 1.5520 0.2895 3.0102 8 1 0.5986 -0.0152 2.6048 9 6 2.0780 -0.3660 4.1149 10 7 3.1271 0.1295 4.7365 11 14 1.2970 -1.9517 4.7194 12 1 0.1391 -2.2941 3.8550 13 1 2.2971 -3.0481 4.6653 14 1 0.8336 -1.7730 6.1190 15 6 1.5260 2.1144 -1.2289 16 6 2.4440 1.5872 -2.3642 17 6 3.8153 1.3945 -1.6845 18 6 3.5396 1.2154 -0.1813 19 1 -0.3634 -1.0203 0.1219 20 1 -0.3634 0.6159 0.8227 21 1 -0.3633 0.4047 -0.9447 22 1 2.0778 3.0520 1.2592 23 1 0.5842 2.0954 1.4082 24 1 3.9880 2.4794 2.3206 25 1 3.4439 2.0937 3.9709 26 1 4.2109 0.8373 2.9701 27 1 3.4943 -0.3286 5.5087 28 1 0.4791 1.9002 -1.4442 29 1 1.6787 3.1823 -1.0729 30 1 2.5160 2.3202 -3.1677 31 1 2.0706 0.6369 -2.7460 32 1 4.4396 2.2732 -1.8475 33 1 4.3078 0.5071 -2.0821 34 1 4.0300 2.0071 0.3852 35 1 3.8983 0.2411 0.1506 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388951829.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:10:50 Heat of formation + Delta-G solvation = -38.876750 kcal Electronic energy + Delta-G solvation = -15602.597749 eV Core-core repulsion = 13214.880339 eV Total energy + Delta-G solvation = -2387.717410 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -40.52354 -36.97385 -36.30840 -33.21576 -30.00588 -29.75025 -28.01726 -27.34964 -25.96985 -22.83078 -21.23782 -20.54690 -18.69281 -17.49237 -16.77012 -16.53174 -15.95223 -15.42254 -15.30545 -15.10834 -14.67745 -13.85245 -13.72458 -13.21409 -13.03747 -12.74413 -12.68111 -12.39910 -12.23218 -12.05670 -11.90130 -11.87042 -11.73573 -11.63525 -11.24376 -11.15777 -10.62199 -10.23357 -8.77099 -7.67398 -5.06887 1.43778 1.46396 1.55027 2.54844 3.09716 3.40557 3.66072 3.80685 3.94212 4.10812 4.41227 4.46640 4.54839 4.58342 4.63681 4.72733 4.78979 4.89423 4.93625 4.98737 5.01973 5.11519 5.15666 5.21004 5.31671 5.47314 5.57541 5.60661 5.66907 5.88992 6.35811 6.68043 7.25399 7.98097 8.35374 9.31927 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038676 B = 0.010823 C = 0.009569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.787248 B = 2586.465086 C = 2925.349065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.090 3.910 4 C 0.129 3.871 5 N -0.616 5.616 6 C 0.190 3.810 7 C -0.214 4.214 8 H 0.077 0.923 9 C -0.075 4.075 10 N -0.952 5.952 11 Si 0.960 3.040 12 H -0.268 1.268 13 H -0.299 1.299 14 H -0.295 1.295 15 C -0.146 4.146 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.099 4.099 19 H 0.076 0.924 20 H 0.033 0.967 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.044 0.956 24 H 0.024 0.976 25 H 0.014 0.986 26 H 0.004 0.996 27 H 0.239 0.761 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 4.675 -13.707 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.048 3.952 4 C 0.003 3.997 5 N -0.339 5.339 6 C 0.045 3.955 7 C -0.345 4.345 8 H 0.095 0.905 9 C -0.266 4.266 10 N -0.604 5.604 11 Si 0.790 3.210 12 H -0.193 1.193 13 H -0.227 1.227 14 H -0.223 1.223 15 C -0.184 4.184 16 C -0.148 4.148 17 C -0.156 4.156 18 C -0.137 4.137 19 H 0.095 0.905 20 H 0.051 0.949 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.062 0.938 24 H 0.042 0.958 25 H 0.033 0.967 26 H 0.023 0.977 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.669 4.454 -13.571 14.530 hybrid contribution -0.294 -0.978 0.997 1.427 sum -2.963 3.476 -12.574 13.377 Atomic orbital electron populations 1.22735 0.81757 1.02134 0.99911 1.87943 1.19718 1.28107 1.94820 1.23159 0.93594 0.83663 0.94752 1.21519 0.97127 0.94298 0.86797 1.44116 1.18480 1.37528 1.33789 1.20666 0.85136 0.94960 0.94706 1.19584 1.01678 1.06459 1.06755 0.90528 1.25493 0.99587 1.02389 0.99159 1.70401 1.27505 1.39966 1.22480 0.85258 0.77582 0.80678 0.77439 1.19276 1.22688 1.22295 1.23152 1.00228 1.00342 0.94682 1.22301 0.94186 1.01014 0.97323 1.22137 0.98128 1.01835 0.93470 1.21971 0.93895 1.00728 0.97124 0.90542 0.94875 0.92331 0.91683 0.93755 0.95750 0.96737 0.97713 0.95106 0.90492 0.89371 0.89537 0.92370 0.90308 0.92245 0.91424 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.66 113.37 1.10 2.11 16 2 O -0.39 -15.55 9.61 -148.98 -1.43 -16.98 16 3 C 0.09 3.19 0.61 -9.72 -0.01 3.18 16 4 C 0.13 5.16 4.44 86.38 0.38 5.55 16 5 N -0.62 -31.43 2.71 -726.96 -1.97 -33.40 16 6 C 0.19 9.82 8.08 127.77 1.03 10.85 16 7 C -0.21 -12.03 9.10 84.03 0.76 -11.27 16 8 H 0.08 4.17 6.30 -2.92 -0.02 4.15 16 9 C -0.07 -4.38 5.38 84.86 0.46 -3.93 16 10 N -0.95 -58.63 9.60 21.65 0.21 -58.42 16 11 Si 0.96 47.81 29.57 68.60 2.03 49.83 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 14 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 15 C -0.15 -3.76 5.83 32.01 0.19 -3.58 16 16 C -0.11 -2.58 6.82 31.79 0.22 -2.36 16 17 C -0.12 -3.10 6.80 31.32 0.21 -2.89 16 18 C -0.10 -3.51 5.34 31.32 0.17 -3.34 16 19 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 20 H 0.03 1.15 5.47 -2.38 -0.01 1.14 16 21 H 0.06 1.53 6.41 -2.39 -0.02 1.52 16 22 H 0.06 2.34 7.85 -2.39 -0.02 2.32 16 23 H 0.04 1.76 6.41 -2.39 -0.02 1.74 16 24 H 0.02 1.06 6.53 -2.39 -0.02 1.04 16 25 H 0.01 0.82 6.97 -2.39 -0.02 0.80 16 26 H 0.00 0.25 7.17 -2.39 -0.02 0.23 16 27 H 0.24 14.44 8.31 -92.70 -0.77 13.67 16 28 H 0.08 1.84 5.99 -2.38 -0.01 1.82 16 29 H 0.09 1.99 8.04 -2.39 -0.02 1.97 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 2.39 6.17 -2.38 -0.01 2.38 16 35 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 Total: -1.00 -66.43 265.28 4.40 -62.03 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.06 Total: 2.61 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.51 Total: -5.68 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -1.76 Total: -91.82 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -1.43 Total: -16.98 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.83 kcal Total: -66.43 4.40 -62.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388951829.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.154 kcal (2) G-P(sol) polarization free energy of solvation -66.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds