Wall clock time and date at job start Thu Apr 9 2020 14:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00347 * 2 1 4 4 H 1.09002 * 109.47242 * 24.27109 * 3 2 1 5 5 C 1.53004 * 109.46854 * 264.27519 * 3 2 1 6 6 N 1.46895 * 109.47101 * 64.99796 * 5 3 2 7 7 C 1.46904 * 110.99947 * 180.02562 * 6 5 3 8 8 H 1.08992 * 109.46783 * 325.00089 * 7 6 5 9 9 C 1.53002 * 109.47315 * 85.00043 * 7 6 5 10 10 C 1.50699 * 109.47062 * 204.99785 * 7 6 5 11 11 H 1.07999 * 119.99973 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99938 * 179.97438 * 10 7 6 13 13 N 1.31521 * 120.00135 * 180.02562 * 12 10 7 14 14 Si 1.86800 * 120.00157 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47371 * 89.99639 * 14 12 10 16 16 H 1.48503 * 109.47238 * 209.99820 * 14 12 10 17 17 H 1.48505 * 109.46970 * 329.99870 * 14 12 10 18 18 C 1.52994 * 109.47363 * 144.27563 * 3 2 1 19 19 C 1.52999 * 117.50007 * 6.90182 * 18 3 2 20 20 C 1.53004 * 117.49689 * 298.24222 * 18 3 2 21 21 H 1.09001 * 109.47304 * 305.43328 * 1 2 3 22 22 H 1.09002 * 109.46697 * 65.42722 * 1 2 3 23 23 H 1.08997 * 109.47310 * 185.42495 * 1 2 3 24 24 H 1.09005 * 109.46925 * 304.99689 * 5 3 2 25 25 H 1.08994 * 109.47143 * 185.00133 * 5 3 2 26 26 H 1.00900 * 111.00468 * 56.04828 * 6 5 3 27 27 H 1.08993 * 109.46931 * 180.02562 * 9 7 6 28 28 H 1.09005 * 109.46916 * 59.99992 * 9 7 6 29 29 H 1.09001 * 109.46837 * 300.00216 * 9 7 6 30 30 H 0.96996 * 120.00321 * 180.02562 * 13 12 10 31 31 H 1.08996 * 115.55417 * 152.57493 * 18 3 2 32 32 H 1.08999 * 117.49966 * 359.97438 * 19 18 3 33 33 H 1.08996 * 117.50037 * 145.02378 * 19 18 3 34 34 H 1.08997 * 117.49705 * 214.98097 * 20 18 3 35 35 H 1.08998 * 117.49880 * 359.97438 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3023 2.0185 0.4224 5 6 2.3492 1.7128 -1.4354 6 7 1.1101 1.8391 -2.2140 7 6 1.3972 2.2293 -3.6009 8 1 2.2544 2.9023 -3.6188 9 6 1.7117 0.9807 -4.4274 10 6 0.1969 2.9289 -4.1847 11 1 -0.6904 3.0699 -3.5853 12 6 0.2318 3.3898 -5.4836 13 7 -0.8156 4.0008 -5.9930 14 14 1.7667 3.1465 -6.5201 15 1 1.6753 1.8532 -7.2442 16 1 1.8828 4.2557 -7.5007 17 1 2.9624 3.1373 -5.6394 18 6 3.2875 1.2950 0.8422 19 6 3.7807 -0.0572 1.3610 20 6 3.1520 0.9504 2.3267 21 1 -0.3634 0.5958 0.8373 22 1 -0.3633 0.4274 -0.9346 23 1 -0.3634 -1.0230 0.0972 24 1 2.9868 0.9531 -1.8877 25 1 2.8727 2.6688 -1.4278 26 1 0.4744 2.4908 -1.7790 27 1 1.9252 1.2704 -5.4562 28 1 0.8545 0.3077 -4.4094 29 1 2.5799 0.4747 -4.0051 30 1 -0.7911 4.3247 -6.9070 31 1 4.0406 2.0321 0.5634 32 1 3.1950 -0.9394 1.1026 33 1 4.8581 -0.2096 1.4238 34 1 3.8161 1.4604 3.0245 35 1 2.1529 0.7315 2.7034 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393918815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:11:08 Heat of formation + Delta-G solvation = -17.518889 kcal Electronic energy + Delta-G solvation = -14701.067341 eV Core-core repulsion = 12314.276077 eV Total energy + Delta-G solvation = -2386.791264 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -38.83920 -36.06713 -35.57261 -32.52300 -30.45547 -27.79800 -25.75316 -25.03202 -22.56372 -22.14419 -20.34357 -19.67738 -16.88583 -16.36706 -15.93148 -15.28490 -14.89566 -14.33630 -13.77896 -13.44803 -13.13207 -12.90498 -12.37815 -12.13447 -11.85370 -11.45898 -11.22459 -11.08181 -11.05259 -10.77615 -10.65119 -10.25499 -10.09663 -9.91644 -9.52422 -9.15389 -8.94957 -8.60441 -7.46355 -6.11037 -4.10874 3.27089 3.36248 3.38745 3.76010 4.18685 4.38045 4.62884 4.98128 5.05066 5.20030 5.27606 5.43849 5.53286 5.64141 5.69969 5.80174 5.86629 5.97047 6.08942 6.14780 6.29135 6.30991 6.37811 6.46809 6.57638 6.75209 6.84316 7.39975 7.53546 7.60304 7.92609 8.32426 8.60344 8.92898 9.51509 11.01901 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048805 B = 0.007079 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.569410 B = 3954.313793 C = 4168.031124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.124 3.876 4 H 0.060 0.940 5 C 0.041 3.959 6 N -0.675 5.675 7 C 0.183 3.817 8 H 0.000 1.000 9 C -0.135 4.135 10 C -0.520 4.520 11 H 0.078 0.922 12 C 0.071 3.929 13 N -0.899 5.899 14 Si 0.892 3.108 15 H -0.278 1.278 16 H -0.298 1.298 17 H -0.269 1.269 18 C -0.158 4.158 19 C -0.163 4.163 20 C -0.179 4.179 21 H 0.028 0.972 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.028 0.972 26 H 0.334 0.666 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 -5.707 12.919 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.066 3.934 4 H 0.078 0.922 5 C -0.089 4.089 6 N -0.306 5.306 7 C 0.074 3.926 8 H 0.017 0.983 9 C -0.193 4.193 10 C -0.558 4.558 11 H 0.096 0.904 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.723 3.277 15 H -0.205 1.205 16 H -0.226 1.226 17 H -0.194 1.194 18 C -0.177 4.177 19 C -0.200 4.200 20 C -0.216 4.216 21 H 0.046 0.954 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.152 0.848 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.069 -6.454 12.601 15.824 hybrid contribution 0.821 1.095 -0.644 1.512 sum 7.890 -5.359 11.957 15.295 Atomic orbital electron populations 1.22846 0.80948 1.01546 1.01221 1.87792 1.19840 1.26865 1.94987 1.21526 0.92671 0.85169 0.94081 0.92216 1.22452 0.94061 0.99241 0.93116 1.60509 1.11965 1.54755 1.03408 1.19520 0.96280 0.91731 0.85089 0.98277 1.22042 0.99583 0.99635 0.98055 1.21102 0.99949 1.36130 0.98613 0.90426 1.24932 0.96022 0.94503 0.97637 1.69892 1.29293 1.39021 1.15491 0.86789 0.84153 0.76703 0.80103 1.20489 1.22563 1.19417 1.22464 0.99435 1.00546 0.95264 1.22837 1.00087 0.94203 1.02871 1.22907 1.02348 1.04246 0.92104 0.95364 0.91237 0.90835 0.90886 0.95429 0.84791 0.94632 0.92386 0.95513 0.92579 0.87112 0.87570 0.89465 0.89210 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.70 101.05 1.08 1.52 16 2 O -0.38 -5.89 8.67 -35.23 -0.31 -6.20 16 3 C 0.12 1.83 2.74 -26.73 -0.07 1.76 16 4 H 0.06 0.86 7.64 -51.93 -0.40 0.46 16 5 C 0.04 0.72 5.12 -3.82 -0.02 0.70 16 6 N -0.68 -13.77 4.79 -107.95 -0.52 -14.28 16 7 C 0.18 4.38 2.19 -68.86 -0.15 4.23 16 8 H 0.00 -0.01 6.86 -51.93 -0.36 -0.36 16 9 C -0.14 -3.12 8.89 37.16 0.33 -2.78 16 10 C -0.52 -14.56 9.17 -34.44 -0.32 -14.88 16 11 H 0.08 2.33 7.86 -52.49 -0.41 1.91 16 12 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 13 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 14 Si 0.89 22.30 24.37 -169.99 -4.14 18.16 16 15 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 16 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 17 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 18 C -0.16 -2.00 5.71 -90.62 -0.52 -2.52 16 19 C -0.16 -1.92 9.87 -26.69 -0.26 -2.18 16 20 C -0.18 -1.96 10.21 -26.69 -0.27 -2.23 16 21 H 0.03 0.35 7.97 -51.93 -0.41 -0.06 16 22 H 0.07 1.12 6.82 -51.93 -0.35 0.77 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 1.33 7.44 -51.93 -0.39 0.95 16 25 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16 26 H 0.33 6.74 8.22 -39.29 -0.32 6.41 16 27 H 0.04 0.84 3.27 -51.93 -0.17 0.67 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.03 0.55 7.45 -51.93 -0.39 0.16 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.11 1.31 8.10 -51.93 -0.42 0.89 16 32 H 0.11 1.38 7.05 -51.93 -0.37 1.01 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 278.13 15.07 4.19 4.19 Total: -1.00 -29.81 278.13 -6.00 -35.81 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.70 Total: 3.42 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.30 Total: -14.42 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.26 Total: -40.96 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.31 Total: -6.20 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.16 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.81 -6.00 -35.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393918815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.286 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds